1. Comparative metagenomics of hydrocarbon and methane seeps of the Gulf of Mexico
- Author
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Gwenaelle Philibert, Benjamin King, Bart P. Lomans, Eric Alsop, Leslie Baksmaty, Nicolas Tsesmetzis, Nikos C. Kyrpides, David Lavallée, Ian M. Head, Adrien Vigneron, Perrine Cruaud, Newcastle University [Newcastle], SHELL, Joint Genome Inst, United States Department of Energy, Centre de Biologie pour la Gestion des Populations (UMR CBGP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Newcastle Univ, Sch Civil Engn & Geosci, Newcastle Upon Tyne, Tyne & Wear, England, Partenaires INRAE, and Vigneron, Adrien
- Subjects
0301 basic medicine ,Deltaproteobacteria ,[SDV]Life Sciences [q-bio] ,Geochemistry ,lcsh:Medicine ,Article ,Methane ,03 medical and health sciences ,chemistry.chemical_compound ,Seawater ,14. Life underwater ,lcsh:Science ,Marine snow ,métagénomique ,Gulf of Mexico ,Multidisciplinary ,biology ,Ecology ,lcsh:R ,Planctomycetes ,Sediment ,biology.organism_classification ,Archaea ,Cold seep ,Hydrocarbons ,Other Physical Sciences ,Petroleum seep ,030104 developmental biology ,Microbial population biology ,chemistry ,13. Climate action ,Anaerobic oxidation of methane ,Environmental science ,lcsh:Q ,Metagenomics ,Biochemistry and Cell Biology ,Gammaproteobacteria - Abstract
Oil and gas percolate profusely through the sediments of the Gulf of Mexico, leading to numerous seeps at the seafloor, where complex microbial, and sometimes animal communities flourish. Sediments from three areas (two cold seeps with contrasting hydrocarbon composition and a site outside any area of active seepage) of the Gulf of Mexico were investigated and compared. Consistent with the existence of a seep microbiome, a distinct microbial community was observed in seep areas compared to sediment from outside areas of active seepage. The microbial community from sediments without any influence from hydrocarbon seepage was characterized by Planctomycetes and the metabolic potential was consistent with detrital marine snow degradation. By contrast, in seep samples with methane as the principal hydrocarbon, methane oxidation by abundant members of ANME-1 was likely the predominant process. Seep samples characterized by fluids containing both methane and complex hydrocarbons, were characterized by abundant Chloroflexi (Anaerolinaceae) and deltaproteobacterial lineages and exhibited potential for complex hydrocarbon degradation. These different metabolic capacities suggested that microorganisms in cold seeps can potentially rely on other processes beyond methane oxidation and that the hydrocarbon composition of the seep fluids may be a critical factor structuring the seafloor microbial community composition and function.
- Published
- 2017