72 results on '"Minna, M."'
Search Results
2. Production of norovirus-, rotavirus-, and enterovirus-like particles in insect cells is simplified by plasmid-based expression
- Author
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Lampinen, Vili, Gröhn, Stina, Lehmler, Nina, Jartti, Minne, Hytönen, Vesa P., Schubert, Maren, and Hankaniemi, Minna M.
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- 2024
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3. A novel rat CVB1-VP1 monoclonal antibody 3A6 detects a broad range of enteroviruses
- Author
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Marie Zeissler, Amir-Babak Sioofy-Khojine, Tino Kantoluoto, Marc S. Horwitz, Minna M. Hankaniemi, Niila V. V. Saarinen, Anni Honkimaa, Jutta E. Laiho, Varpu Marjomäki, Sarah J. Richardson, Malin Flodström-Tullberg, Olli H. Laitinen, Vesa P. Hytönen, Virginia M. Stone, Heikki Hyöty, Lääketieteen ja biotieteiden tiedekunta - Faculty of Medicine and Life Sciences, and University of Tampere
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Models, Molecular ,0301 basic medicine ,Biolääketieteet - Biomedicine ,Protein Conformation ,medicine.drug_class ,Immunoelectron microscopy ,lcsh:Medicine ,Enzyme-Linked Immunosorbent Assay ,Coxsackievirus ,medicine.disease_cause ,Monoclonal antibody ,enteroviruses ,Article ,Epitope ,Epitopes ,Mice ,03 medical and health sciences ,Protein Domains ,Enterovirus Infections ,medicine ,antibodies ,Animals ,Humans ,lcsh:Science ,Multidisciplinary ,030102 biochemistry & molecular biology ,biology ,Poliovirus ,lcsh:R ,vasta-aineet ,Antibodies, Monoclonal ,biology.organism_classification ,Antibodies, Neutralizing ,Immunohistochemistry ,Virology ,Enterovirus B, Human ,Rats ,3. Good health ,enterovirukset ,030104 developmental biology ,Kasvibiologia, mikrobiologia, virologia - Plant biology, microbiology, virology ,biology.protein ,lcsh:Q ,Capsid Proteins ,Antibody ,Clone (B-cell biology) ,Protein Binding - Abstract
Enteroviruses (EVs) are common RNA viruses that cause diseases ranging from rash to paralytic poliomyelitis. For example, EV-A and EV-C viruses cause hand-foot and mouth disease and EV-B viruses cause encephalitis and myocarditis, which can result in severe morbidity and mortality. While new vaccines and treatments for EVs are under development, methods for studying and diagnosing EV infections are still limited and therefore new diagnostic tools are required. Our aim was to produce and characterize new antibodies that work in multiple applications and detect EVs in tissues and in vitro. Rats were immunized with Coxsackievirus B1 capsid protein VP1 and hybridomas were produced. Hybridoma clones were selected based on their reactivity in different immunoassays. The most promising clone, 3A6, was characterized and it performed well in multiple techniques including ELISA, immunoelectron microscopy, immunocyto- and histochemistry and in Western blotting, detecting EVs in infected cells and tissues. It recognized several EV-Bs and also the EV-C representative Poliovirus 3, making it a broad-spectrum EV specific antibody. The 3A6 rat monoclonal antibody can help to overcome some of the challenges faced with commonly used EV antibodies: it enables simultaneous use of mouse-derived antibodies in double staining and it is useful in murine models.
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- 2018
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4. A novel rat CVB1-VP1 monoclonal antibody 3A6 detects a broad range of enteroviruses
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Saarinen, Niila V. V., primary, Laiho, Jutta E., additional, Richardson, Sarah J., additional, Zeissler, Marie, additional, Stone, Virginia M., additional, Marjomäki, Varpu, additional, Kantoluoto, Tino, additional, Horwitz, Marc S., additional, Sioofy-Khojine, Amirbabak, additional, Honkimaa, Anni, additional, Hankaniemi, Minna M., additional, Flodström-Tullberg, Malin, additional, Hyöty, Heikki, additional, Hytönen, Vesa P., additional, and Laitinen, Olli H., additional
- Published
- 2018
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5. Content validity of the questionnaire considering opinions of the Finnish physicians on euthanasia and assisted suicide.
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Tolvanen E, Piili RP, Louhiala P, Hökkä M, Vänskä J, and Lehto JT
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- Humans, Surveys and Questionnaires, Finland, Male, Female, Adult, Middle Aged, Reproducibility of Results, Suicide, Assisted psychology, Physicians psychology, Attitude of Health Personnel, Euthanasia psychology
- Abstract
Despite numerous surveys conducted across the world considering assisted death, content validity evaluations of the survey questionnaires are seldom published. Likewise, there is no previous research about the content validity of the survey "Finnish physicians´ attitudes and opinions on euthanasia and physician-assisted suicide" conducted by the Finnish Medical Association. The aim of this study was to assess the content validity of the survey questionnaire. To study this, a purposive sample of physicians was recruited. Firstly, the participants were interviewed to bring up their interpretations and assessments considering the relevance, comprehensibility, and measurement scale suitability of the questions. Secondly, the participants assessed the revised study questionnaire. Altogether 16 physicians participated in the study. Although the relevance and comprehensibility of the questions were assessed to be high-level, parallel interpretations of the contents were discovered. We suggest content validity research to be essential when developing a questionnaire on assisted death. Our results could be helpful when planning future surveys about this challenging topic., Competing Interests: Declarations. Competing interests: The authors declare no competing interests. Ethical approval and informed consent: This study was evaluated and approved by the Regional Ethics Committee of Human Sciences, Tampere, Finland (36/2023). The participants obtained written and oral information about the study and gave their informed consent to participate. This study was conducted according to national laws, regulations, and the Declaration of Helsinki., (© 2024. The Author(s).)
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- 2024
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6. Author Correction: Cross-shore transport and eddies promote large scale response to urban eutrophication.
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Kessouri F, Sutula MA, Bianchi D, Ho M, Damien P, McWilliams JC, Frieder CA, Renault L, Frenzel H, McLaughlin K, and Deutsch C
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- 2024
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7. Clustering of RNA co-expression network identifies novel long non-coding RNA biomarkers in squamous cell carcinoma.
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Nissinen L, Haalisto J, Riihilä P, Piipponen M, and Kähäri VM
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- Humans, Cell Line, Tumor, Gene Regulatory Networks, Prognosis, Skin Neoplasms genetics, Skin Neoplasms pathology, Skin Neoplasms metabolism, Cell Movement genetics, Gene Expression Profiling, RNA, Long Noncoding genetics, RNA, Long Noncoding metabolism, Biomarkers, Tumor genetics, Biomarkers, Tumor metabolism, Carcinoma, Squamous Cell genetics, Carcinoma, Squamous Cell pathology, Carcinoma, Squamous Cell metabolism, Gene Expression Regulation, Neoplastic
- Abstract
Long non-coding RNAs (lncRNAs) have emerged as important players in cancer progression. Cutaneous squamous cell carcinoma (cSCC) is the most common metastatic skin cancer with increasing incidence worldwide. The prognosis of the metastatic cSCC is poor, and currently there are no established biomarkers to predict metastasis risk or specific therapeutic targets for advanced or metastatic cSCC. To elucidate the role of lncRNAs in cSCC, RNA sequencing of patient derived cSCC cell lines and normal human epidermal keratinocytes was performed. The correlation analysis of differentially expressed lncRNAs and protein-coding genes revealed six distinct gene clusters with one of the upregulated clusters featuring genes associated with cell motility. Upregulation of the expression of lncRNAs linked to cSCC cell motility in cSCC and head and neck SCC (HNSCC) cells was confirmed using qRT-PCR. Elevated expression of HOTTIP and LINC00543 was also noted in SCC tumors in vivo and was associated with poorer prognosis in HNSCC and lung SCC cohorts within TCGA data, respectively. Altogether, these findings uncover a novel set of lncRNAs implicated in cSCC cell locomotion. These lncRNAs may serve as potential novel biomarkers and as putative therapeutic targets for locally advanced and metastatic cSCC., (© 2024. The Author(s).)
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- 2024
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8. Machine learning predicts upper secondary education dropout as early as the end of primary school.
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Psyridou M, Prezja F, Torppa M, Lerkkanen MK, Poikkeus AM, and Vasalampi K
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- Humans, Child, Adolescent, Female, Male, Longitudinal Studies, Students psychology, Machine Learning, Student Dropouts statistics & numerical data, Schools
- Abstract
Education plays a pivotal role in alleviating poverty, driving economic growth, and empowering individuals, thereby significantly influencing societal and personal development. However, the persistent issue of school dropout poses a significant challenge, with its effects extending beyond the individual. While previous research has employed machine learning for dropout classification, these studies often suffer from a short-term focus, relying on data collected only a few years into the study period. This study expanded the modeling horizon by utilizing a 13-year longitudinal dataset, encompassing data from kindergarten to Grade 9. Our methodology incorporated a comprehensive range of parameters, including students' academic and cognitive skills, motivation, behavior, well-being, and officially recorded dropout data. The machine learning models developed in this study demonstrated notable classification ability, achieving a mean area under the curve (AUC) of 0.61 with data up to Grade 6 and an improved AUC of 0.65 with data up to Grade 9. Further data collection and independent correlational and causal analyses are crucial. In future iterations, such models may have the potential to proactively support educators' processes and existing protocols for identifying at-risk students, thereby potentially aiding in the reinvention of student retention and success strategies and ultimately contributing to improved educational outcomes., (© 2024. The Author(s).)
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- 2024
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9. Cholesterol accumulation impairs HIF-1α-dependent immunometabolic reprogramming of LPS-stimulated macrophages by upregulating the NRF2 pathway.
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Ting KKY, Yu P, Dow R, Ibrahim H, Karim S, Polenz CK, Winer DA, Woo M, Jongstra-Bilen J, and Cybulsky MI
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- Animals, Mice, RAW 264.7 Cells, Oxidative Stress drug effects, Kelch-Like ECH-Associated Protein 1 metabolism, Kelch-Like ECH-Associated Protein 1 genetics, Up-Regulation drug effects, Toll-Like Receptor 4 metabolism, NF-E2-Related Factor 2 metabolism, NF-E2-Related Factor 2 genetics, Hypoxia-Inducible Factor 1, alpha Subunit metabolism, Hypoxia-Inducible Factor 1, alpha Subunit genetics, Lipopolysaccharides, Macrophages metabolism, Macrophages drug effects, Macrophages immunology, Cholesterol metabolism, Signal Transduction drug effects
- Abstract
Lipid accumulation in macrophages (Mφs) is a hallmark of atherosclerosis. Yet, how lipid loading modulates Mφ inflammatory responses remains unclear. We endeavored to gain mechanistic insights into how pre-loading with free cholesterol modulates Mφ metabolism upon LPS-induced TLR4 signaling. We found that activities of prolyl hydroxylases (PHDs) and factor inhibiting HIF (FIH) are higher in cholesterol loaded Mφs post-LPS stimulation, resulting in impaired HIF-1α stability, transactivation capacity and glycolysis. In RAW264.7 cells expressing mutated HIF-1α proteins resistant to PHDs and FIH activities, cholesterol loading failed to suppress HIF-1α function. Cholesterol accumulation induced oxidative stress that enhanced NRF2 protein stability and triggered a NRF2-mediated antioxidative response prior to and in conjunction with LPS stimulation. LPS stimulation increased NRF2 mRNA and protein expression, but it did not enhance NRF2 protein stability further. NRF2 deficiency in Mφs alleviated the inhibitory effects of cholesterol loading on HIF-1α function. Mutated KEAP1 proteins defective in redox sensing expressed in RAW264.7 cells partially reversed the effects of cholesterol loading on NRF2 activation. Collectively, we showed that cholesterol accumulation in Mφs induces oxidative stress and NRF2 stabilization, which when combined with LPS-induced NRF2 expression leads to enhanced NRF2-mediated transcription that ultimately impairs HIF-1α-dependent glycolytic and inflammatory responses., (© 2024. The Author(s).)
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- 2024
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10. Clinical decision making when cytology indicates a Warthin tumor.
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Sirviö M, Aro K, Naukkarinen M, Mäkitie A, Tarkkanen J, Kelppe J, and Atula T
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- Humans, Retrospective Studies, Parotid Gland pathology, Clinical Decision-Making, Sensitivity and Specificity, Parotid Neoplasms pathology, Adenolymphoma pathology
- Abstract
Warthin tumor (WT) is a benign tumor usually affecting the parotid gland. The main diagnostic tool remains ultrasound combined with fine-needle aspiration cytology (FNAC). This study aims to examine how reliably FNAC indicates WT for clinical decision making regarding surgical versus conservative management. We included all patients who underwent FNAC from a parotid gland lesion between 2016 and 2018 at our institution, and whose FNAC revealed WT suspicion. The FNACs were divided into three groups based on the cytology report: certain, likely, and possible WT. The patients were divided into two groups based on having had either surgery or follow-up. We sent a questionnaire to patients who had not undergone surgery in order to obtain follow-up for a minimum of four years. Altogether, 135 FNAC samples, from 133 tumors and 125 patients, showed signs of WT. Of the 125 patients, 44 (35%) underwent surgery, and 81 (65%) were managed conservatively. Preoperative misdiagnosis in FNAC occurred in three (7%) surgically treated tumors. Their FNACs were reported as possible WTs, but histopathology revealed another benign lesion. In the conservatively treated group, two patients underwent surgery later during the follow-up. Cytological statements of WT were seldom false, and none were malignant. The majority of the patients were only followed-up and rarely required further treatment. A certain or likely diagnosis of WT in the FNAC report by an experienced head and neck pathologist is highly reliable in selecting patients for conservative surveillance., (© 2024. The Author(s).)
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- 2024
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11. Cross-shore transport and eddies promote large scale response to urban eutrophication.
- Author
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Kessouri F, Sutula MA, Bianchi D, Ho M, Damien P, McWilliams JC, Frieder CA, Renault L, Frenzel H, McLaughlin K, and Deutsch C
- Subjects
- Nitrogen, Oxygen, Plankton, Ecosystem, Eutrophication
- Abstract
A key control on the magnitude of coastal eutrophication is the degree to which currents quickly transport nitrogen derived from human sources away from the coast to the open ocean before eutrophication develops. In the Southern California Bight (SCB), an upwelling-dominated eastern boundary current ecosystem, anthropogenic nitrogen inputs increase algal productivity and cause subsurface acidification and oxygen (O 2 ) loss along the coast. However, the extent of anthropogenic influence on eutrophication beyond the coastal band, and the physical transport mechanisms and biogeochemical processes responsible for these effects are still poorly understood. Here, we use a submesoscale-resolving numerical model to document the detailed biogeochemical mass balance of nitrogen, carbon and oxygen, their physical transport, and effects on offshore habitats. Despite management of terrestrial nutrients that has occurred in the region over the last 20 years, coastal eutrophication continues to persist. The input of anthropogenic nutrients promote an increase in productivity, remineralization and respiration offshore, with recurrent O 2 loss and pH decline in a region located 30-90 km from the mainland. During 2013 to 2017, the spatially averaged 5-year loss rate across the Bight was 1.3 mmol m - 3 O 2 , with some locations losing on average up to 14.2 mmol m - 3 O 2 . The magnitude of loss is greater than model uncertainty assessed from data-model comparisons and from quantification of intrinsic variability. This phenomenon persists for 4 to 6 months of the year over an area of 278,40 km 2 ( ∼ 30% of SCB area). These recurrent features of acidification and oxygen loss are associated with cross-shore transport of nutrients by eddies and plankton biomass and their accumulation and retention within persistent eddies offshore within the SCB., (© 2024. The Author(s).)
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- 2024
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12. Anger and disgust shape judgments of social sanctions across cultures, especially in high individual autonomy societies.
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Andersson PA, Vartanova I, Västfjäll D, Tinghög G, Strimling P, Wu J, Hazin I, Akotia CS, Aldashev A, Andrighetto G, Anum A, Arikan G, Bagherian F, Barrera D, Basnight-Brown D, Batkeyev B, Berezina E, Björnstjerna M, Boski P, Bovina I, Huyen BTT, Čekrlija Đ, Choi HS, Contreras-Ibáñez CC, Costa-Lopes R, de Barra M, de Zoysa P, Dorrough AR, Dvoryanchikov N, Engelmann JB, Euh H, Fang X, Fiedler S, Foster-Gimbel OA, Fülöp M, Gardarsdottir RB, Gill CMHD, Glöckner A, Graf S, Grigoryan A, Gritskov V, Growiec K, Halama P, Hartanto A, Hopthrow T, Hřebíčková M, Iliško D, Imada H, Kapoor H, Kawakami K, Khachatryan N, Kharchenko N, Kiyonari T, Kohút M, Leslie LM, Li Y, Li NP, Li Z, Liik K, Maitner AT, Manhique B, Manley H, Medhioub I, Mentser S, Nejat P, Nipassa O, Nussinson R, Onyedire NG, Onyishi IE, Panagiotopoulou P, Perez-Floriano LR, Persson M, Pirttilä-Backman AM, Pogosyan M, Raver J, Rodrigues RB, Romanò S, Romero PP, Sakki I, San Martin A, Sherbaji S, Shimizu H, Simpson B, Szabo E, Takemura K, Teixeira MLM, Thanomkul N, Tiliouine H, Travaglino GA, Tsirbas Y, Widodo S, Zein R, Zirganou-Kazolea L, and Eriksson K
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- Humans, Judgment, Morals, Anger, Emotions, Disgust
- Abstract
When someone violates a social norm, others may think that some sanction would be appropriate. We examine how the experience of emotions like anger and disgust relate to the judged appropriateness of sanctions, in a pre-registered analysis of data from a large-scale study in 56 societies. Across the world, we find that individuals who experience anger and disgust over a norm violation are more likely to endorse confrontation, ostracism and, to a smaller extent, gossip. Moreover, we find that the experience of anger is consistently the strongest predictor of judgments of confrontation, compared to other emotions. Although the link between state-based emotions and judgments may seem universal, its strength varies across countries. Aligned with theoretical predictions, this link is stronger in societies, and among individuals, that place higher value on individual autonomy. Thus, autonomy values may increase the role that emotions play in guiding judgments of social sanctions., (© 2024. The Author(s).)
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- 2024
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13. Changes in physiological arousal during an arithmetic task: profiles of elementary school students and their associations with mindset, task performance and math grade.
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Puusepp I, Tammi T, Linnavalli T, Huotilainen M, Laine S, Kuusisto E, and Tirri K
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- Humans, Mathematics, Task Performance and Analysis, Students
- Abstract
Task-related change in physiological arousal is suggested to reflect active involvement with the task. While studies often examine such task-related changes in arousal as averaged across the entire task, the present study focused on temporal changes in arousal during a task. More specifically, we investigated changes in elementary school students' physiological arousal during an arithmetic task and associations between these changes and students' mindset, performance on the task, and math grades. We used a person-oriented approach to analyze the tonic electrodermal activity of 86 fourth graders, recorded while they were working on an arithmetic task. With model-based clustering of students' on-task electrodermal activity, we identified three groups of students with differing temporal dynamics of physiological arousal during the task: Increasing Arousal, Decreasing Arousal and Decreasing and Increasing Arousal. The Decreasing Arousal profile contained more students classified as holding a Fixed Mindset Tendency than would be expected if physiological profile membership and mindset tendency were independent. The Increasing Arousal profile performed better on the task than the Decreasing Arousal profile. No association was found with math grades. These results provide a new insight into individual differences in temporal patterns of on-task physiological arousal., (© 2024. The Author(s).)
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- 2024
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14. Plant-expressed Zika virus envelope protein elicited protective immunity against the Zika virus in immunocompetent mice.
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Shin M, Kang H, Shin KR, Lee R, Kim K, Min K, Cho KN, Sohn EJ, Kim KS, Kim SH, Cho YJ, Park J, and Hahn TW
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- Female, Animals, Mice, Viral Envelope Proteins genetics, Antibodies, Viral, Antibodies, Neutralizing, Zika Virus, Zika Virus Infection, Viral Vaccines
- Abstract
Zika virus infection causes multiple clinical issues, including Guillain-Barré syndrome and neonatal malformation. Vaccination is considered as the only strategy for the prevention of ZIKV-induced clinical issues. This study developed a plant-based recombinant vaccine that transiently expressed the ZIKV envelope protein (ZikaEnv:aghFc) in Nicotiana benthamiana and evaluated the protective immunity afforded by it in immunocompetent mice. ZikaEnv:aghFc induced both humoral and cellular immunity at a low dose (1-5 μg). This immune-inducing potential was enhanced further when adjuvanted CIA09A. In addition, antigen-specific antibodies and neutralizing antibodies were vertically transferred from immunized females to their progeny and afforded both protective immunity to ZIKV and cross-protection to Dengue virus infection. These results suggest that our plant-based ZIKV vaccine provides a safe and efficient protective strategy with a competitive edge., (© 2023. The Author(s).)
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- 2023
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15. Effect of ocean outfall discharge volume and dissolved inorganic nitrogen load on urban eutrophication outcomes in the Southern California Bight.
- Author
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Ho M, Kessouri F, Frieder CA, Sutula M, Bianchi D, and McWilliams JC
- Abstract
Climate change is increasing drought severity worldwide. Ocean discharges of municipal wastewater are a target for potable water recycling. Potable water recycling would reduce wastewater volume; however, the effect on mass nitrogen loading is dependent on treatment. In cases where nitrogen mass loading is not altered or altered minimally, this practice has the potential to influence spatial patterns in coastal eutrophication. We apply a physical-biogeochemical numerical ocean model to understand the influence of nitrogen management and potable wastewater recycling on net primary productivity (NPP), pH, and oxygen. We model several theoretical management scenarios by combining dissolved inorganic nitrogen (DIN) reductions from 50 to 85% and recycling from 0 to 90%, applied to 19 generalized wastewater outfalls in the Southern California Bight. Under no recycling, NPP, acidification, and oxygen loss decline with DIN reductions, which simulated habitat volume expansion for pelagic calcifiers and aerobic taxa. Recycling scenarios under intermediate DIN reduction show patchier areas of pH and oxygen loss with steeper vertical declines relative to a "no recycling" scenario. These patches are diminished under 85% DIN reduction across all recycling levels, suggesting nitrogen management lowers eutrophication risk even with concentrated discharges. These findings represent a novel application of ocean numerical models to investigate the regional effects of idealized outfall management on eutrophication. Additional work is needed to investigate more realistic outfall-specific water recycling and nutrient management scenarios and to contextualize the benefit of these management actions, given accelerating acidification and hypoxia from climate change., (© 2023. The Author(s).)
- Published
- 2023
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16. Lipid species profiling of bronchoalveolar lavage fluid cells of horses housed on two different bedding materials.
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Mönki J, Holopainen M, Ruhanen H, Karikoski N, Käkelä R, and Mykkänen A
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- Animals, Horses, Bronchoalveolar Lavage Fluid chemistry, Chromatography, Liquid, Prospective Studies, Soil, Phosphatidylinositols, Bedding and Linens, Bronchoalveolar Lavage, Tandem Mass Spectrometry, Inflammation veterinary
- Abstract
The lipidome of equine BALF cells has not been described. The objectives of this prospective repeated-measures study were to explore the BALF cells' lipidome in horses and to identify lipids associated with progression or resolution of airway inflammation. BALF cells from 22 horses exposed to two bedding materials (Peat 1-Wood shavings [WS]-Peat 2) were studied by liquid chromatography-tandem mass spectrometry (LC-MS/MS). The effects of bedding on lipid class and species compositions were tested with rmANOVA. Correlations between lipids and cell counts were examined. The BALF cells' lipidome showed bedding-related differences for molar percentage (mol%) of 60 species. Whole phosphatidylcholine (PC) class and its species PC 32:0 (main molecular species 16:0_16:0) had higher mol% after Peat 2 compared with WS. Phosphatidylinositol 38:4 (main molecular species 18:0_20:4) was higher after WS compared with both peat periods. BALF cell count correlated positively with mol% of the lipid classes phosphatidylserine, sphingomyelin, ceramide, hexosylceramide, and triacylglycerol but negatively with PC. BALF cell count correlated positively with phosphatidylinositol 38:4 mol%. In conclusion, equine BALF cells' lipid profiles explored with MS-based lipidomics indicated subclinical inflammatory changes after WS. Inflammatory reactions in the cellular lipid species composition were detected although cytological responses indicating inflammation were weak., (© 2023. The Author(s).)
- Published
- 2023
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17. The development and cross-national validation of the short health literacy for school-aged children (HLSAC-5) instrument.
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Paakkari O, Kulmala M, Lyyra N, Torppa M, Mazur J, Boberova Z, and Paakkari L
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- Adolescent, Humans, Male, Female, Child, Reproducibility of Results, Psychometrics, Europe, Surveys and Questionnaires, Health Literacy
- Abstract
Health literacy is an asset for and indicator of adolescents' health and wellbeing, and should therefore be monitored and addressed across countries. This study aimed to develop and validate a shorter version of the original 10-item health literacy for school-aged children instrument in a cross-national context, using data from the health behaviour in school-aged children 2017/18 survey. The data were obtained from 25 425 adolescents (aged 13 and 15 years) from seven European countries. Determination was made of the best item combination to form a shorter version of the health literacy instrument. Thereafter, the structural validity, reliability, measurement invariance, and criterion validity of the new 5-item instrument were examined. Confirmatory factor analysis showed a good model fit to the data across countries and in the total sample, confirming the structural validity (CFI = 0.995, TLI = 0.989, SRMR = 0.011, RMSEA = 0.031). The internal consistency of the instrument was at a good level across countries (α = 0.87-0.98), indicating that the instrument provided reliable scores. Configural and metric invariance was established across genders, ages, and countries. Scalar invariance was achieved for age and gender groups, but not between countries. This indicated that the factor structure of the scale was similar, but that there were differences between the countries in health literacy levels. Regarding criterion validity, structural equation modelling showed a positive association between health literacy and self-rated health in all the participating countries. The new instrument was found to be valid and reliable for the purposes of measuring health literacy among adolescents in a cross-national context., (© 2023. The Author(s).)
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- 2023
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18. Potential of continuous cover forestry on drained peatlands to increase the carbon sink in Finland.
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Lehtonen A, Eyvindson K, Härkönen K, Leppä K, Salmivaara A, Peltoniemi M, Salminen O, Sarkkola S, Launiainen S, Ojanen P, Räty M, and Mäkipää R
- Abstract
Land-based mitigation measures are needed to achieve climate targets. One option is the mitigation of currently high greenhouse gas (GHG) emissions of nutrient-rich drained peatland forest soils. Continuous cover forestry (CCF) has been proposed as a measure to manage this GHG emission source; however, its emission reduction potential and impact on timber production at regional and national scales have not been quantified. To quantify the potential emission reduction, we simulated four management scenarios for Finnish forests: (i) The replacement of clear-cutting by selection harvesting on nutrient-rich drained peatlands (CCF) and (ii) the current forest management regime (BAU), and both at two harvest levels, namely (i) the mean annual harvesting (2016-2018) and (ii) the maximum sustainable yield. The simulations were conducted at the stand scale with a forest simulator (MELA) coupled with a hydrological model (SpaFHy), soil C model (Yasso07) and empirical GHG exchange models. Simulations showed that the management scenario that avoided clear-cutting on nutrient-rich drained peatlands (i.e. CCF) produced approximately 1 Tg CO
2 eq. higher carbon sinks annually compared with BAU at equal harvest level for Finland. This emission reduction can be attributed to the maintenance of a higher biomass sink and to the mitigation of soil emissions from nutrient-rich drained peatland sites., (© 2023. Springer Nature Limited.)- Published
- 2023
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19. The growth of the mastoid volume in children with a cochlear implant.
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Tirkkonen M, Iso-Mustajärvi M, Dhanasingh A, Linder P, Myller K, and Dietz A
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- Humans, Child, Mastoid diagnostic imaging, Mastoid surgery, Round Window, Ear surgery, Ear surgery, Cochlear Implantation methods, Cochlear Implants
- Abstract
The aim of this study was to understand the mastoid volume development in children who undergo cochlear implantation surgery. Cochlear implant (CI) database of our clinic (Kuopio University Hospital) was reviewed for computed tomography (CT) images of CI patients (age under 12 years at the time of implantation) with a minimum time interval of twelve months between their pre- and postoperative CT. Eight patients (nine ears) were found eligible for inclusion. Three linear measurements were taken by using picture archiving and communication systems (PACS) software and the volume of the MACS was measured with Seg 3D software. The mastoid volume increased on average 817.5 mm
3 between the pre- and the postoperative imaging time point. The linear distances measured between anatomical points like the round window (RW)- bony ear canal (BEC), the RW-sigmoid sinus (SS), the BEC-SS, and the mastoid tip (MT)-superior semicircular canal (SSC) increased significantly with the age of the patient at both the pre-op and post-op time points. The linear measurements between key anatomical points and mastoid volume showed a positive linear correlation. The correlation between linear measurement and volume were significant between the MT-SSC (r = 0.706, p = 0.002), RW-SS (r = 0.646, p = 0.005) and RW-BEC (r = 0.646, p = 0.005). Based on our findings from the CI implanted patients and comparing it with the previous literature findings from non-CI implanted patients, we could say that the CI surgery seem to have no effect on the development of mastoid volume in children., (© 2023. The Author(s).)- Published
- 2023
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20. Fatty acid fingerprints in bronchoalveolar lavage fluid and its extracellular vesicles reflect equine asthma severity.
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Höglund N, Nieminen P, Mustonen AM, Käkelä R, Tollis S, Koho N, Holopainen M, Ruhanen H, and Mykkänen A
- Subjects
- Animals, Horses, Bronchoalveolar Lavage Fluid chemistry, Fatty Acids, Gas Chromatography-Mass Spectrometry, Bronchoalveolar Lavage, Asthma diagnosis, Asthma veterinary, Extracellular Vesicles, Horse Diseases diagnosis
- Abstract
Equine asthma (EA) is an inflammatory disease of the lower airways driven by mediators released from cells. Extracellular vesicles (EVs) are vehicles for lipid mediators, which possess either pro-inflammatory or dual anti-inflammatory and pro-resolving functions. In this study, we investigated how the respiratory fatty acid (FA) profile reflects airway inflammatory status. The FA composition of bronchoalveolar lavage fluid (BALF), BALF supernatant, and bronchoalveolar EVs of healthy horses (n = 15) and horses with mild/moderate EA (n = 10) or severe EA (SEA, n = 5) was determined with gas chromatography and mass spectrometry. The FA profiles distinguished samples with different diagnoses in all sample types, yet they were insufficient to predict the health status of uncategorized samples. Different individual FAs were responsible for the discrimination of the diagnoses in different sample types. Particularly, in the EVs of SEA horses the proportions of palmitic acid (16:0) decreased and those of eicosapentaenoic acid (20:5n-3) increased, and all sample types of asthmatic horses had elevated dihomo-γ-linolenic acid (20:3n-6) proportions. The results suggest simultaneous pro-inflammatory and resolving actions of FAs and a potential role for EVs as vehicles for lipid mediators in asthma pathogenesis. EV lipid manifestations of EA can offer translational targets to study asthma pathophysiology and treatment options., (© 2023. The Author(s).)
- Published
- 2023
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21. Hydrogen migration in inner-shell ionized halogenated cyclic hydrocarbons.
- Author
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Abid AR, Bhattacharyya S, Venkatachalam AS, Pathak S, Chen K, Lam HVS, Borne K, Mishra D, Bilodeau RC, Dumitriu I, Berrah N, Patanen M, and Rolles D
- Abstract
We have studied the fragmentation of the brominated cyclic hydrocarbons bromocyclo-propane, bromocyclo-butane, and bromocyclo-pentane upon Br(3d) and C(1s) inner-shell ionization using coincidence ion momentum imaging. We observe a substantial yield of CH
3 + fragments, whose formation requires intramolecular hydrogen (or proton) migration, that increases with molecular size, which contrasts with prior observations of hydrogen migration in linear hydrocarbon molecules. Furthermore, by inspecting the fragment ion momentum correlations of three-body fragmentation channels, we conclude that CHx + fragments (with x = 0, …, 3) with an increasing number of hydrogens are more likely to be produced via sequential fragmentation pathways. Overall trends in the molecular-size-dependence of the experimentally observed kinetic energy releases and fragment kinetic energies are explained with the help of classical Coulomb explosion simulations., (© 2023. The Author(s).)- Published
- 2023
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22. Eye movement behavior in a real-world virtual reality task reveals ADHD in children.
- Author
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Merzon L, Pettersson K, Aronen ET, Huhdanpää H, Seesjärvi E, Henriksson L, MacInnes WJ, Mannerkoski M, Macaluso E, and Salmi J
- Subjects
- Child, Humans, Eye Movements, Task Performance and Analysis, Attention Deficit Disorder with Hyperactivity diagnosis, Virtual Reality
- Abstract
Eye movements and other rich data obtained in virtual reality (VR) environments resembling situations where symptoms are manifested could help in the objective detection of various symptoms in clinical conditions. In the present study, 37 children with attention deficit hyperactivity disorder and 36 typically developing controls (9-13 y.o) played a lifelike prospective memory game using head-mounted display with inbuilt 90 Hz eye tracker. Eye movement patterns had prominent group differences, but they were dispersed across the full performance time rather than associated with specific events or stimulus features. A support vector machine classifier trained on eye movement data showed excellent discrimination ability with 0.92 area under curve, which was significantly higher than for task performance measures or for eye movements obtained in a visual search task. We demonstrated that a naturalistic VR task combined with eye tracking allows accurate prediction of attention deficits, paving the way for precision diagnostics., (© 2022. The Author(s).)
- Published
- 2022
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23. Enrichment of cancer-predisposing germline variants in adult and pediatric patients with acute lymphoblastic leukemia.
- Author
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Douglas SPM, Lahtinen AK, Koski JR, Leimi L, Keränen MAI, Koskenvuo M, Heckman CA, Jahnukainen K, Pitkänen E, Wartiovaara-Kautto U, and Kilpivaara O
- Subjects
- Adult, Child, Exome, Genetic Predisposition to Disease, Germ Cells, Humans, Germ-Line Mutation, Precursor Cell Lymphoblastic Leukemia-Lymphoma genetics, Precursor Cell Lymphoblastic Leukemia-Lymphoma therapy
- Abstract
Despite recent progress in acute lymphoblastic leukemia (ALL) therapies, a significant subset of adult and pediatric ALL patients has a dismal prognosis. Better understanding of leukemogenesis and recognition of germline genetic changes may provide new tools for treating patients. Given that hematopoietic stem cell transplantation, often from a family member, is a major form of treatment in ALL, acknowledging the possibility of hereditary predisposition is of special importance. Reports of comprehensive germline analyses performed in adult ALL patients are scarce. Aiming at fulfilling this gap of knowledge, we investigated variants in 93 genes predisposing to hematologic malignancies and 70 other cancer-predisposing genes from exome data obtained from 61 adult and 87 pediatric ALL patients. Our results show that pathogenic (P) or likely pathogenic (LP) germline variants in genes associated with predisposition to ALL or other cancers are prevalent in ALL patients: 8% of adults and 11% of children. Comparison of P/LP germline variants in patients to population-matched controls (gnomAD Finns) revealed a 2.6-fold enrichment in ALL cases (CI 95% 1.5-4.2, p = 0.00071). Acknowledging inherited factors is crucial, especially when considering hematopoietic stem cell transplantation and planning post-therapy follow-up. Harmful germline variants may also predispose patients to excessive toxicity potentially compromising the outcome. We propose integrating germline genetics into precise ALL patient care and providing families genetic counseling., (© 2022. The Author(s).)
- Published
- 2022
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24. Ultra-fast fabrication of Bi 2 Te 3 based thermoelectric materials by flash-sintering at room temperature combining with spark plasma sintering.
- Author
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Zhang Z, Sun M, Liu J, Cao L, Su M, Liao Q, Deng Y, and Qin L
- Abstract
Highly crystalline Bi
2 Te3 based compounds with small grain size were successfully synthesized by flash sintering (FS) method in 10 s at room temperature under suitable current density using Bi, Te and Se powders. The instantaneously generated local Joule heat at grain boundary is regarded as the main reason for the rapid completion of chemical reaction and crystallization. By combining FS synthesis method with spark plasma sintering (SPS), Bi2 Te3 based bulk materials with high relative density were fabricated in 10 min. Suitably prolonging sintering temperature and holding time in SPS process can decrease carrier concentration and phonon thermal conductivity, while increasing carrier mobility. Hence, the sample prepared at 753 K for 3 min shows 20% higher ZT value than that of the sample prepared at 723 K for 3 min. Compared with common zone melting or powder metallurgy methods taking several hours by complex operation, this method is time-saving and low cost., (© 2022. The Author(s).)- Published
- 2022
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25. CRF07_BC is associated with slow HIV disease progression in Chinese patients.
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Ye J, Chen J, Wang J, Wang Y, Xing H, Yu F, Liu L, Han Y, Huang H, Feng Y, Ruan Y, Zheng M, Lu X, Guo X, Yang H, Guo Q, Lin Y, Wu J, Wu S, Tang Y, Sun X, Zou X, Yu G, Li J, Zhou Q, Su L, Zhang L, Gao Z, Xin R, He S, Xu C, Hao M, Hao Y, Ren X, Li J, Bai L, Jiang T, Zhang T, Shao Y, and Lu H
- Subjects
- Aged, China epidemiology, Disease Progression, Genotype, Homosexuality, Male, Humans, Male, Phylogeny, Sequence Analysis, DNA, HIV Infections epidemiology, HIV-1 genetics, Sexual and Gender Minorities
- Abstract
HIV subtypes convey important epidemiological information and possibly influence the rate of disease progression. In this study, HIV disease progression in patients infected with CRF01_AE, CRF07_BC, and subtype B was compared in the largest HIV molecular epidemiology study ever done in China. A national data set of HIV pol sequences was assembled by pooling sequences from public databases and the Beijing HIV laboratory network. Logistic regression was used to assess factors associated with the risk of AIDS at diagnosis ([AIDSAD], defined as a CD4 count < 200 cells/µL) in patients with HIV subtype B, CRF01_AE, and CRF07_BC. Of the 20,663 sequences, 9,156 (44.3%) were CRF01_AE. CRF07_BC was responsible for 28.3% of infections, followed by B (13.9%). In multivariable analysis, the risk of AIDSAD differed significantly according to HIV subtype (OR for CRF07_BC vs. B: 0.46, 95% CI 0.39─0.53), age (OR for ≥ 65 years vs. < 18 years: 4.3 95% CI 1.81─11.8), and transmission risk groups (OR for men who have sex with men vs. heterosexuals: 0.67 95% CI 0.6─0.75). These findings suggest that HIV diversity in China is constantly evolving and gaining in complexity. CRF07_BC is less pathogenic than subtype B, while CRF01_AE is as pathogenic as B., (© 2022. The Author(s).)
- Published
- 2022
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26. Zika virus baculovirus-expressed envelope protein elicited humoral and cellular immunity in immunocompetent mice.
- Author
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Shin M, Kim K, Lee HJ, Lee R, Jung YJ, Park J, and Hahn TW
- Subjects
- Animals, Male, Mice, Inbred C57BL, Mice, Baculoviridae immunology, Immunity, Cellular, Immunity, Humoral, Immunocompetence immunology, Vaccines, Synthetic, Viral Envelope Proteins immunology, Viral Envelope Proteins physiology, Viral Vaccines immunology, Zika Virus immunology, Zika Virus Infection immunology, Zika Virus Infection virology
- Abstract
Zika virus (ZIKV) is a mosquito-borne virus that has a high risk of inducing Guillain-Barré syndrome and microcephaly in newborns. Because vaccination is considered the most effective strategy against ZIKV infection, we designed a recombinant vaccine utilizing the baculovirus expression system with two strains of ZIKV envelope protein (MR766, Env_M; ZBRX6, Env_Z). Animals inoculated with Env_M and Env_Z produced ZIKV-specific antibodies and secreted effector cytokines such as interferon-γ, tumor necrosis factor-α, and interleukin-12. Moreover, the progeny of immunized females had detectable maternal antibodies that protected them against two ZIKV strains (MR766 and PRVABC59) and a Dengue virus strain. We propose that the baculovirus expression system ZIKV envelope protein recombinant provides a safe and effective vaccine strategy., (© 2022. The Author(s).)
- Published
- 2022
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27. Deep learning based classification of dynamic processes in time-resolved X-ray tomographic microscopy.
- Author
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Bührer M, Xu H, Hendriksen AA, Büchi FN, Eller J, Stampanoni M, and Marone F
- Abstract
Time-resolved X-ray tomographic microscopy is an invaluable technique to investigate dynamic processes in 3D for extended time periods. Because of the limited signal-to-noise ratio caused by the short exposure times and sparse angular sampling frequency, obtaining quantitative information through post-processing remains challenging and requires intensive manual labor. This severely limits the accessible experimental parameter space and so, prevents fully exploiting the capabilities of the dedicated time-resolved X-ray tomographic stations. Though automatic approaches, often exploiting iterative reconstruction methods, are currently being developed, the required computational costs typically remain high. Here, we propose a highly efficient reconstruction and classification pipeline (SIRT-FBP-MS-D-DIFF) that combines an algebraic filter approximation and machine learning to significantly reduce the computational time. The dynamic features are reconstructed by standard filtered back-projection with an algebraic filter to approximate iterative reconstruction quality in a computationally efficient manner. The raw reconstructions are post-processed with a trained convolutional neural network to extract the dynamic features from the low signal-to-noise ratio reconstructions in a fully automatic manner. The capabilities of the proposed pipeline are demonstrated on three different dynamic fuel cell datasets, one exploited for training and two for testing without network retraining. The proposed approach enables automatic processing of several hundreds of datasets in a single day on a single GPU node readily available at most institutions, so extending the possibilities in future dynamic X-ray tomographic investigations., (© 2021. The Author(s).)
- Published
- 2021
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28. The relationship between health-related quality of life and melancholic depressive symptoms is modified by brain insulin receptor gene network.
- Author
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Selenius JS, Silveira PP, Salonen M, Kautiainen H, von Bonsdorff M, Kajantie E, Lahti J, Eriksson JG, and Wasenius NS
- Subjects
- Aged, Body Mass Index, Cross-Sectional Studies, Depressive Disorder epidemiology, Female, Genetic Predisposition to Disease, Humans, Male, Middle Aged, Psychiatric Status Rating Scales, Risk, Risk Assessment, Surveys and Questionnaires, Antigens, CD biosynthesis, Brain metabolism, Depression epidemiology, Depression psychology, Gene Expression Regulation, Gene Regulatory Networks, Quality of Life, Receptor, Insulin biosynthesis, Sadness
- Abstract
To investigate whether expression-based polygenic risk scores for the insulin receptor gene network (ePRS-IRs) modifiy the association between type of depressive symptoms and health-related quality of life (HRQoL). This cross-sectional study includes 1558 individuals from the Helsinki Birth Cohort Study. Between 2001 and 2004, the Short Form-36 questionnaire was employed to assess mental and physical components of HRQoL and Beck Depression Inventory (BDI) to assess depressive symptoms. Depressive symptoms were categorized into minimal (BDI < 10), non-melancholic and melancholic types of depression. The ePRS-IRs were calculated for the hippocampal (hePRS-IR) and the mesocorticolimbic (mePRS-IR) regions of the brain. General linear regression models adjusted for age, sex, population stratification, lifestyle factors and body mass index were applied to analyze the data. Both types of depressive symptoms were associated with lower HRQoL (p < 0.0001). HePRS-IR modified the association between the types of depression and mental HRQoL (p for interaction = 0.005). Melancholic type of depressive symptoms was associated with higher mental HRQoL compared to the non-melancholic symptoms among individuals with low hePRS-IR (adjusted mean 4.1, 95% CI 0.7-7.4, p = 0.018). However, no such difference was evident in moderate or high hePRS-IR groups as higher hePRS-IR was associated with lower mental HRQoL (B = - 3.4, 95% CI - 5.6 to - 1.2) in individuals with melancholic type of depressive symptoms. No direct associations were detected between the ePRS-IRs and type of depressive symptoms or HRQoL. Variations in the glucose-insulin metabolism can lower HRQoL in individuals with melancholic depressive symptoms., (© 2021. The Author(s).)
- Published
- 2021
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29. Deep denoising for multi-dimensional synchrotron X-ray tomography without high-quality reference data.
- Author
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Hendriksen AA, Bührer M, Leone L, Merlini M, Vigano N, Pelt DM, Marone F, di Michiel M, and Batenburg KJ
- Abstract
Synchrotron X-ray tomography enables the examination of the internal structure of materials at submicron spatial resolution and subsecond temporal resolution. Unavoidable experimental constraints can impose dose and time limits on the measurements, introducing noise in the reconstructed images. Convolutional neural networks (CNNs) have emerged as a powerful tool to remove noise from reconstructed images. However, their training typically requires collecting a dataset of paired noisy and high-quality measurements, which is a major obstacle to their use in practice. To circumvent this problem, methods for CNN-based denoising have recently been proposed that require no separate training data beyond the already available noisy reconstructions. Among these, the Noise2Inverse method is specifically designed for tomography and related inverse problems. To date, applications of Noise2Inverse have only taken into account 2D spatial information. In this paper, we expand the application of Noise2Inverse in space, time, and spectrum-like domains. This development enhances applications to static and dynamic micro-tomography as well as X-ray diffraction tomography. Results on real-world datasets establish that Noise2Inverse is capable of accurate denoising and enables a substantial reduction in acquisition time while maintaining image quality.
- Published
- 2021
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- View/download PDF
30. Interactions of genetic variants and prenatal stress in relation to the risk for recurrent respiratory infections in children.
- Author
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Korhonen LS, Lukkarinen M, Kantojärvi K, Räty P, Karlsson H, Paunio T, Peltola V, and Karlsson L
- Subjects
- Adult, Child, Preschool, Cohort Studies, Female, Gene Frequency genetics, Gene-Environment Interaction, Genetic Variation genetics, Genotype, Humans, Infant, Interleukin-6 genetics, Male, Mothers psychology, Pregnancy, Prenatal Exposure Delayed Effects genetics, Prenatal Exposure Delayed Effects physiopathology, Psychological Distress, Respiratory Tract Infections metabolism, Respiratory Tract Infections physiopathology, Risk Factors, Stress, Psychological psychology, Respiratory Tract Infections genetics, Stress, Physiological physiology
- Abstract
Genetic variants may predispose children to recurrent respiratory infections (RRIs) but studies on genotype-environment interaction are rare. We hypothesized that the risk for RRIs is elevated in children with innate immune gene variants, and that prenatal exposure to maternal psychological distress further increases the risk. In a birth cohort, children with RRIs (n = 96) were identified by the age of 24 months and compared with the remaining cohort children (n = 894). The risk for RRIs in children with preselected genetic variants and the interaction between maternal distress during pregnancy and child genotype were assessed with logistic regression. The IL6 minor allele G was associated with elevated risk for RRIs (OR 1.55; 95% CI 1.14-2.12). Overall, there was no interaction between maternal psychological distress and child genotype. Exploratory analyses showed that, the association between the variant type of IL6 and the risk for RRIs was dependent on prenatal exposure to maternal psychological distress in males (OR 1.96; 95% CI 1.04-3.67). Our study didn't find genotype-environment interaction between prenatal maternal distress and child genotype. Exploratory analyses suggest sex differences in gene-environment interaction related to susceptibility to RRIs.
- Published
- 2021
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31. Optical projection tomography as a quantitative tool for analysis of cell morphology and density in 3D hydrogels.
- Author
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Belay B, Koivisto JT, Parraga J, Koskela O, Montonen T, Kellomäki M, Figueiras E, and Hyttinen J
- Subjects
- Cell Count, Cell Survival drug effects, Gelatin chemistry, Microscopy, Confocal, Polysaccharides, Bacterial chemistry, Tissue Engineering, Cell Culture Techniques methods, Hydrogels chemistry, Imaging, Three-Dimensional methods, Tomography methods
- Abstract
Assessing cell morphology and function, as well as biomaterial performance in cell cultures, is one of the key challenges in cell biology and tissue engineering (TE) research. In TE, there is an urgent need for methods to image actual three-dimensional (3D) cell cultures and access the living cells. This is difficult using established optical microscopy techniques such as wide-field or confocal microscopy. To address the problem, we have developed a new protocol using Optical Projection Tomography (OPT) to extract quantitative and qualitative measurements from hydrogel cell cultures. Using our tools, we demonstrated the method by analyzing cell response in three different hydrogel formulations in 3D with 1.5 mm diameter samples of: gellan gum (GG), gelatin functionalized gellan gum (gelatin-GG), and Geltrex. We investigated cell morphology, density, distribution, and viability in 3D living cells. Our results showed the usability of the method to quantify the cellular responses to biomaterial environment. We observed that an elongated morphology of cells, thus good material response, in gelatin-GG and Geltrex hydrogels compared with basic GG. Our results show that OPT has a sensitivity to assess in real 3D cultures the differences of cellular responses to the properties of biomaterials supporting the cells.
- Published
- 2021
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32. PHACTR1 genetic variability is not critical in small vessel ischemic disease patients and PcomA recruitment in C57BL/6J mice.
- Author
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Messerschmidt C, Foddis M, Blumenau S, Müller S, Bentele K, Holtgrewe M, Kun-Rodrigues C, Alonso I, do Carmo Macario M, Morgadinho AS, Velon AG, Santo G, Santana I, Mönkäre S, Kuuluvainen L, Schleutker J, Pöyhönen M, Myllykangas L, Senatore A, Berchtold D, Winek K, Meisel A, Pavlovic A, Kostic V, Dobricic V, Lohmann E, Hanagasi H, Guven G, Bilgic B, Bras J, Guerreiro R, Beule D, Dirnagl U, and Sassi C
- Subjects
- Aged, Amino Acid Substitution, Animals, Disease Models, Animal, Female, Humans, Male, Mice, Middle Aged, Brain Ischemia genetics, Brain Ischemia metabolism, Brain Ischemia pathology, Microfilament Proteins genetics, Microfilament Proteins metabolism, Mutation, Missense, Stroke genetics, Stroke metabolism, Stroke pathology
- Abstract
Recently, several genome-wide association studies identified PHACTR1 as key locus for five diverse vascular disorders: coronary artery disease, migraine, fibromuscular dysplasia, cervical artery dissection and hypertension. Although these represent significant risk factors or comorbidities for ischemic stroke, PHACTR1 role in brain small vessel ischemic disease and ischemic stroke most important survival mechanism, such as the recruitment of brain collateral arteries like posterior communicating arteries (PcomAs), remains unknown. Therefore, we applied exome and genome sequencing in a multi-ethnic cohort of 180 early-onset independent familial and apparently sporadic brain small vessel ischemic disease and CADASIL-like Caucasian patients from US, Portugal, Finland, Serbia and Turkey and in 2 C57BL/6J stroke mouse models (bilateral common carotid artery stenosis [BCCAS] and middle cerebral artery occlusion [MCAO]), characterized by different degrees of PcomAs patency. We report 3 very rare coding variants in the small vessel ischemic disease-CADASIL-like cohort (p.Glu198Gln, p.Arg204Gly, p.Val251Leu) and a stop-gain mutation (p.Gln273*) in one MCAO mouse. These coding variants do not cluster in PHACTR1 known pathogenic domains and are not likely to play a critical role in small vessel ischemic disease or brain collateral circulation. We also exclude the possibility that copy number variants (CNVs) or a variant enrichment in Phactr1 may be associated with PcomA recruitment in BCCAS mice or linked to diverse vascular traits (cerebral blood flow pre-surgery, PcomA size, leptomeningeal microcollateral length and junction density during brain hypoperfusion) in C57BL/6J mice, respectively. Genetic variability in PHACTR1 is not likely to be a common susceptibility factor influencing small vessel ischemic disease in patients and PcomA recruitment in C57BL/6J mice. Nonetheless, rare variants in PHACTR1 RPEL domains may influence the stroke outcome and are worth investigating in a larger cohort of small vessel ischemic disease patients, different ischemic stroke subtypes and with functional studies.
- Published
- 2021
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33. Dj1 deficiency protects against atherosclerosis with anti-inflammatory response in macrophages.
- Author
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Sivasubramaniyam T, Yang J, Cheng HS, Zyla A, Li A, Besla R, Dotan I, Revelo XS, Shi SY, Le H, Schroer SA, Dodington DW, Park YJ, Kim MJ, Febbraro D, Ruel I, Genest J, Kim RH, Mak TW, Winer DA, Robbins CS, and Woo M
- Subjects
- Animals, Cells, Cultured, Female, Gene Deletion, Humans, Macrophages metabolism, Male, Mice, Mice, Knockout, Middle Aged, Protective Factors, RAW 264.7 Cells, Atherosclerosis genetics, Inflammation genetics, Protein Deglycase DJ-1 genetics
- Abstract
Inflammation is a key contributor to atherosclerosis with macrophages playing a pivotal role through the induction of oxidative stress and cytokine/chemokine secretion. DJ1, an anti-oxidant protein, has shown to paradoxically protect against chronic and acute inflammation. However, the role of DJ1 in atherosclerosis remains elusive. To assess the role of Dj1 in atherogenesis, we generated whole-body Dj1-deficient atherosclerosis-prone Apoe null mice (Dj1
-/- Apoe-/- ). After 21 weeks of atherogenic diet, Dj1-/- Apoe-/- mice were protected against atherosclerosis with significantly reduced plaque macrophage content. To assess whether haematopoietic or parenchymal Dj1 contributed to atheroprotection in Dj1-deficient mice, we performed bone-marrow (BM) transplantation and show that Dj1-deficient BM contributed to their attenuation in atherosclerosis. To assess cell-autonomous role of macrophage Dj1 in atheroprotection, BM-derived macrophages from Dj1-deficient mice and Dj1-silenced macrophages were assessed in response to oxidized low-density lipoprotein (oxLDL). In both cases, there was an enhanced anti-inflammatory response which may have contributed to atheroprotection in Dj1-deficient mice. There was also an increased trend of plasma DJ-1 levels from individuals with ischemic heart disease compared to those without. Our findings indicate an atheropromoting role of Dj1 and suggests that targeting Dj1 may provide a novel therapeutic avenue for atherosclerosis treatment or prevention.- Published
- 2021
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- View/download PDF
34. Both sedentary time and physical activity are associated with cardiometabolic health in overweight adults in a 1 month accelerometer measurement.
- Author
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Sjöros T, Vähä-Ypyä H, Laine S, Garthwaite T, Lahesmaa M, Laurila SM, Latva-Rasku A, Savolainen A, Miikkulainen A, Löyttyniemi E, Sievänen H, Kalliokoski KK, Knuuti J, Vasankari T, and Heinonen IHA
- Subjects
- Accelerometry methods, Adult, Biomarkers blood, Blood Glucose metabolism, Blood Pressure, Body Mass Index, Cardiovascular Diseases blood, Cholesterol, HDL blood, Cross-Sectional Studies, Female, Glucose metabolism, Humans, Insulin blood, Insulin Resistance physiology, Male, Metabolic Syndrome blood, Middle Aged, Motor Activity, Overweight complications, Sedentary Behavior, Triglycerides blood, Waist Circumference, Cardiovascular Diseases etiology, Exercise physiology, Overweight physiopathology
- Abstract
The aim of this study was to examine the associations of cardiometabolic health markers with device-measured sedentary behavior (SB) duration and different intensities of physical activity (PA) among overweight working-aged adults with low self-reported PA levels. This cross-sectional analysis included 144 subjects (42 men) with mean age of 57 (SD 6.5) years and mean BMI of 31.7 (SD 4) kg/m
2 . SB and standing time, breaks in sedentary time, light PA (LPA) and moderate-to-vigorous PA (MVPA) were measured for 4 consecutive weeks (mean 25 days, SD 4) with hip-worn accelerometers. Fasting plasma glucose, insulin, HbA1c , triglycerides and total cholesterol, HDL and LDL were measured from venous blood samples. HOMA-IR index was calculated as a surrogate of insulin resistance. The associations were examined using linear models. LPA, MVPA, and daily steps associated with better insulin sensitivity and favorable plasma lipid profile, when adjusted for age, sex and BMI, whereas greater proportion of SB associated with insulin resistance and unfavorable lipid profile. As all PA intensities associated with better cardiometabolic health, the total daily duration of PA may be more relevant than intensity in maintaining metabolic health in overweight adults, if the current guidelines for PA are not met.Trial Registration: ClinicalTrials.gov NCT03101228, registered 05/04/2017, https://clinicaltrials.gov/show/NCT03101228 .- Published
- 2020
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- View/download PDF
35. Occurrence and genotypes of Cryptosporidium spp., Giardia duodenalis, and Blastocystis sp. in household, shelter, breeding, and pet market dogs in Guangzhou, southern China.
- Author
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Liao S, Lin X, Sun Y, Qi N, Lv M, Wu C, Li J, Hu J, Yu L, Cai H, Xiao W, Sun M, and Li G
- Subjects
- Animals, Breeding, China epidemiology, Disease Reservoirs, Dogs, Family Characteristics, Female, Genotype, Humans, Male, Prevalence, Blastocystis genetics, Blastocystis Infections epidemiology, Cryptosporidiosis epidemiology, Cryptosporidium genetics, Giardia lamblia genetics, Giardiasis epidemiology, Zoonoses epidemiology
- Abstract
Cryptosporidium spp., Giardia duodenalis, and Blastocystis sp. are common intestinal protozoans that infect humans and animals worldwide. A survey that assessed the prevalence, molecular characteristics, and zoonotic potential of these pathogens was conducted on a variety of dogs in Guangzhou, southern China. A total of 651 canine stool samples from household (n = 199), shelter (n = 149), breeding (n = 237), and pet market dogs (n = 66) were collected from eight districts in Guangzhou. Cryptosporidium spp., Giardia duodenalis, and Blastocystis sp. were detected by PCR amplification of the SSU rRNA gene. Giardia duodenalis-positive specimens were further assigned into assemblages using the glutamate dehydrogenase gene. Cryptosporidium spp., G. duodenalis, and Blastocystis sp. were found in 21 (3.2%), 20 (3.1%), and 35 (5.4%) samples, respectively. The overall prevalence of shelter dogs (40.28%, 60/149) was significantly higher than that of household (3.0%, 6/199), breeding (2.1%, 5/237), and pet market dogs (7.5%, 5/66) (χ
2 = 154.72, df = 3, P < 0.001). Deworming in the past 12 months had a strong protective effect on the risk of contracting parasite infections (P < 0.001). No significant differences were detected between age or sex groups (P > 0.05). Dog-specific C. canis (n = 19) and zoonotic C. parvum (n = 2) were the only two Cryptosporidium species. Sequence analysis revealed the presence of three G. duodenalis assemblages: dog-specific assemblages D (n = 14) and C (n = 5), and cat-specific F (n = 1). Zoonotic Blastocystis ST3 (n = 28) was the dominant subtype, followed by ST1 (n = 6) and ST10 (n = 1). To our knowledge, this is the first large-scale investigation on the occurrence and molecular characteristics of Blastocystis sp. in dogs in China. Our results indicated that the dogs seemed to play a negligible role as reservoirs for Cryptosporidium spp. and G. duodenalis transmission to humans, but they are potential novel suitable hosts of Blastocystis sp. A strict sentinel surveillance system of dogs should be established to minimise the zoonotic risk of spreading blastocystosis among humans and dogs.- Published
- 2020
- Full Text
- View/download PDF
36. Unveiling water dynamics in fuel cells from time-resolved tomographic microscopy data.
- Author
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Bührer M, Xu H, Eller J, Sijbers J, Stampanoni M, and Marone F
- Abstract
X-ray dynamic tomographic microscopy offers new opportunities in the volumetric investigation of dynamic processes. Due to data complexity and their sheer amount, extraction of comprehensive quantitative information remains challenging due to the intensive manual interaction required. Particularly for dynamic investigations, these intensive manual requirements significantly extend the total data post-processing time, limiting possible dynamic analysis realistically to a few samples and time steps, hindering full exploitation of the new capabilities offered at dedicated time-resolved X-ray tomographic stations. In this paper, a fully automatized iterative tomographic reconstruction pipeline (rSIRT-PWC-DIFF) designed to reconstruct and segment dynamic processes within a static matrix is presented. The proposed algorithm includes automatic dynamic feature separation through difference sinograms, a virtual sinogram step for interior tomography datasets, time-regularization extended to small sub-regions for increased robustness and an automatic stopping criterion. We demonstrate the advantages of our approach on dynamic fuel cell data, for which the current data post-processing pipeline heavily relies on manual labor. The proposed approach reduces the post-processing time by at least a factor of 4 on limited computational resources. Full independence from manual interaction additionally allows straightforward up-scaling to efficiently process larger data, extensively boosting the possibilities in future dynamic X-ray tomographic investigations.
- Published
- 2020
- Full Text
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37. Metabolic alterations in Parkinson's disease astrocytes.
- Author
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Sonninen TM, Hämäläinen RH, Koskuvi M, Oksanen M, Shakirzyanova A, Wojciechowski S, Puttonen K, Naumenko N, Goldsteins G, Laham-Karam N, Lehtonen M, Tavi P, Koistinaho J, and Lehtonen Š
- Subjects
- Astrocytes metabolism, Brain metabolism, Brain pathology, Calcium metabolism, Dopaminergic Neurons metabolism, Dopaminergic Neurons pathology, Humans, Induced Pluripotent Stem Cells metabolism, Lewy Bodies genetics, Metabolic Networks and Pathways genetics, Movement Disorders genetics, Movement Disorders metabolism, Movement Disorders pathology, Mutation genetics, Neuroglia metabolism, Neuroglia pathology, Parkinson Disease pathology, Glucosylceramidase genetics, Leucine-Rich Repeat Serine-Threonine Protein Kinase-2 genetics, Parkinson Disease genetics, alpha-Synuclein genetics
- Abstract
In Parkinson`s disease (PD), the loss of dopaminergic (DA) neurons in the substantia nigra pars compacta is associated with Lewy bodies arising from the accumulation of alpha-synuclein protein which leads ultimately to movement impairment. While PD has been considered a disease of the DA neurons, a glial contribution, in particular that of astrocytes, in PD pathogenesis is starting to be uncovered. Here, we report findings from astrocytes derived from induced pluripotent stem cells of LRRK2 G2019S mutant patients, with one patient also carrying a GBA N370S mutation, as well as healthy individuals. The PD patient astrocytes manifest the hallmarks of the disease pathology including increased expression of alpha-synuclein. This has detrimental consequences, resulting in altered metabolism, disturbed Ca
2+ homeostasis and increased release of cytokines upon inflammatory stimulation. Furthermore, PD astroglial cells manifest increased levels of polyamines and polyamine precursors while lysophosphatidylethanolamine levels are decreased, both of these changes have been reported also in PD brain. Collectively, these data reveal an important role for astrocytes in PD pathology and highlight the potential of iPSC-derived cells in disease modeling and drug discovery.- Published
- 2020
- Full Text
- View/download PDF
38. Transcriptomics uncovers substantial variability associated with alterations in manufacturing processes of macrophage cell therapy products.
- Author
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Gurvich OL, Puttonen KA, Bailey A, Kailaanmäki A, Skirdenko V, Sivonen M, Pietikäinen S, Parker NR, Ylä-Herttuala S, and Kekarainen T
- Subjects
- Biomarkers metabolism, Cytokines metabolism, Flow Cytometry, Humans, Immunophenotyping, Macrophages immunology, Phagocytosis, Real-Time Polymerase Chain Reaction, Wound Healing physiology, Cell- and Tissue-Based Therapy, Macrophages metabolism, Transcriptome
- Abstract
Gene expression plasticity is central for macrophages' timely responses to cues from the microenvironment permitting phenotypic adaptation from pro-inflammatory (M1) to wound healing and tissue-regenerative (M2, with several subclasses). Regulatory macrophages are a distinct macrophage type, possessing immunoregulatory, anti-inflammatory, and angiogenic properties. Due to these features, regulatory macrophages are considered as a potential cell therapy product to treat clinical conditions, e.g., non-healing diabetic foot ulcers. In this study we characterized two differently manufactured clinically relevant regulatory macrophages, programmable cells of monocytic origin and comparator macrophages (M1, M2a and M0) using flow-cytometry, RT-qPCR, phagocytosis and secretome measurements, and RNA-Seq. We demonstrate that conventional phenotyping had a limited potential to discriminate different types of macrophages which was ameliorated when global transcriptome characterization by RNA-Seq was employed. Using this approach we confirmed that macrophage manufacturing processes can result in a highly reproducible cell phenotype. At the same time, minor changes introduced in manufacturing resulted in phenotypically and functionally distinct regulatory macrophage types. Additionally, we have identified a novel constellation of process specific biomarkers, which will support further clinical product development.
- Published
- 2020
- Full Text
- View/download PDF
39. Angiosarcoma of bone: a retrospective study of the European Musculoskeletal Oncology Society (EMSOS).
- Author
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Palmerini E, Leithner A, Windhager R, Gosheger G, Boye K, Laitinen M, Hardes J, Traub F, Jutte P, Willegger M, Casanova J, Setola E, Righi A, Picci P, Donati DM, and Ferrari S
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Bone Neoplasms secondary, Combined Modality Therapy, Female, Follow-Up Studies, Hemangiosarcoma pathology, Humans, Male, Middle Aged, Neoplasm Metastasis, Prognosis, Retrospective Studies, Survival Rate, Young Adult, Bone Neoplasms therapy, Chemoradiotherapy mortality, Hemangiosarcoma therapy
- Abstract
Angiosarcoma of bone (B-AS) is a rare malignant tumor of vascular origin. The aim of this retrospective study is to report on treatments and prognosis. Data were collected from the EMSOS website. 80 patients in 9 centers included: 51 male/29 female; median age 54 years (range 17 to 92); 56% with localized disease, 44% metastatic. Primary tumor surgery: 76% (30% amputation, 26% intralesional margins); radiotherapy (RT): 41%; chemotherapy (CT): 47% (56% in metastatic, 41% in localized cases). With a median follow-up of 31 months (range 40 to 309), 5-year overall survival (OS) was 27% (95%CI 16-30): 41% (95%CI 25-56) for localized patients, and 8% (95%CI 0-20) for metastatic (p = 0.002). In metastatic patients, 1 year OS was significantly influenced by chemotherapy response: 67% (95CI% 29-100) for those who responded or had stable disease (n = 7), and 18% (95CI% 0-41) for patients with progressive disease (n = 11), p 0.002. The surgical complete remission (SCR) status was pivotal in localized patients (5-year OS 45% for SCR, 17% no SCR, p = 0.03); also 5-year OS was significantly influenced by age and site of the tumor. After multivariate analysis, the addition of radiotherapy to surgery significantly influenced the disease-free survival (DFS) rate, whereas the use of chemotherapy lost the significance showed at the univariate analysis. Overall, patients with metastatic B-AS have a dismal prognosis, with a prolonged survival in case with a response to chemotherapy. Experimental trials with more active systemic treatment regimens are needed. In patients with localized disease, the patient's age and site of the tumor are prognostic factors and any effort must be made to achieve an SCR status. No definitive conclusions can be drawn from our data on the use of adjuvant chemotherapy, while the use of adjuvant radiotherapy might improve DSF in patients surgically free of disease.
- Published
- 2020
- Full Text
- View/download PDF
40. Incidence of pulmonary tuberculosis in Chinese adults with type 2 diabetes: a retrospective cohort study in Shanghai.
- Author
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Li Y, Guo J, Xia T, Wu F, Tian J, Cheng M, Xu W, Yang Q, Chen J, Wu Z, Yan Q, Shi Y, and Wu F
- Subjects
- Adult, Aged, Body Mass Index, China epidemiology, Female, Follow-Up Studies, Humans, Incidence, Male, Middle Aged, Prognosis, Retrospective Studies, Risk Factors, Tuberculosis, Pulmonary metabolism, Tuberculosis, Pulmonary pathology, Asian People statistics & numerical data, Biomarkers blood, Blood Glucose analysis, Diabetes Mellitus, Type 2 physiopathology, Tuberculosis, Pulmonary epidemiology
- Abstract
To estimate the incidence of pulmonary tuberculosis (PTB) in Chinese diabetes patients and to evaluate the effect of blood glucose on PTB risk, a retrospective cohort study was built based on the diabetes management system in Shanghai and included 240,692 adults aged 35 or above. Incidences of PTB in all diabetes patients and by subgroups were calculated and compared. Multivariable Cox regression models with restricted cubic splines were used to evaluate the association of fasting plasma glucose (FPG) with the risk of PTB. A total of 439 incident PTB cases were identified in the cohort after an average of 3.83 years of follow-up. The overall PTB incidence rate was 51.3/100,000 in diabetes patients, and annual incidence remained higher than that in general population. The PTB incidence rate of diabetes patients was higher in men than in women (86.2 vs. 22.1 per 100,000) and was highest in patients with body mass index (BMI) < 18.5 kg/m
2 (215.2/100,000) or FPG ≥ 10 mmol/L (143.2/100,000). Our results suggest that the risk of tuberculosis may be greater at higher levels of FPG in diabetes patients of normal weight. Specific tuberculosis screening strategies for different characteristic diabetes population should be provided to prevent and control tuberculosis in China.- Published
- 2020
- Full Text
- View/download PDF
41. Maternal sleep quality during pregnancy is associated with neonatal auditory ERPs.
- Author
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Lavonius M, Railo H, Karlsson L, Wikström V, Tuulari JJ, Scheinin NM, Paavonen EJ, Polo-Kantola P, Karlsson H, and Huotilainen M
- Subjects
- Female, Humans, Infant, Newborn, Male, Pregnancy, Brain physiopathology, Evoked Potentials, Pregnancy Complications physiopathology, Sleep, Sleep Initiation and Maintenance Disorders physiopathology, Surveys and Questionnaires
- Abstract
Poor maternal sleep quality during pregnancy may act as a prenatal stress factor for the fetus and associate with neonate neurocognition, for example via fetal programming. The impacts of worsened maternal sleep on neonatal development and, more specifically on neonatal auditory brain responses, have not been studied. A total of 155 mother-neonate dyads drawn from the FinnBrain Birth Cohort Study participated in our study including maternal self-report questionnaires on sleep at gestational week 24 and an event-related potential (ERP) measurement among 1-2-day-old neonates. For sleep quality assessment, the Basic Nordic Sleep Questionnaire (BNSQ) was used and calculated scores for (1) insomnia, (2) subjective sleep loss and (3) sleepiness were formed and applied in the analyses. In the auditory ERP protocol, three emotionally uttered pseudo words (in happy, angry and sad valence) were presented among neutrally uttered pseudo words. To study the relations between prenatal maternal sleep quality and auditory emotion-related ERP responses, mixed-effects regression models were computed for early (100-200 ms) and late (300-500 ms) ERP response time-windows. All of the selected BNSQ scores were associated with neonatal ERP responses for happy and angry emotion stimuli (sleep loss and sleepiness in the early, and insomnia, sleep loss and sleepiness in the late time-window). For sad stimuli, only maternal sleep loss predicted the neonatal ERP response in the late time-window, likely because the overall ERP was weakest in the sad condition. We conclude that maternal sleep quality during pregnancy is associated with changes in neonatal auditory ERP responses.
- Published
- 2020
- Full Text
- View/download PDF
42. Functional impact of cytochrome P450 3A (CYP3A) missense variants in cattle.
- Author
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Giantin M, Rahnasto-Rilla M, Tolosi R, Lucatello L, Pauletto M, Guerra G, Pezzato F, Lopparelli RM, Merlanti R, Carnier P, Capolongo F, Honkakoski P, and Dacasto M
- Subjects
- Animals, Catalytic Domain genetics, Cell Line, Cricetulus, Cytochrome P-450 CYP3A chemistry, Gene Frequency, Male, Microsomes, Liver metabolism, Models, Molecular, Molecular Docking Simulation, Multigene Family, Nifedipine metabolism, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Testosterone metabolism, Cattle genetics, Cattle metabolism, Cytochrome P-450 CYP3A genetics, Cytochrome P-450 CYP3A metabolism, Mutation, Missense, Polymorphism, Single Nucleotide
- Abstract
Cytochrome P450 3A is the most important CYP subfamily in humans, and CYP3A4/CYP3A5 genetic variants contribute to inter-individual variability in drug metabolism. However, no information is available for bovine CYP3A (bCYP3A). Here we described bCYP3A missense single nucleotide variants (SNVs) and evaluated their functional effects. CYP3A28, CYP3A38 and CYP3A48 missense SNVs were identified in 300 bulls of Piedmontese breed through targeted sequencing. Wild-type and mutant bCYP3A cDNAs were cloned and expressed in V79 cells. CYP3A-dependent oxidative metabolism of testosterone (TST) and nifedipine (NIF) was assessed by LC-MS/MS. Finally, SNVs functional impact on TST hydroxylation was measured ex vivo in liver microsomes from individually genotyped animals. Thirteen missense SNVs were identified and validated. Five variants showed differences in CYP3A catalytic activity: three CYP3A28 SNVs reduced TST 6β-hydroxylation; one CYP3A38 variant increased TST 16β-hydroxylation, while a CYP3A48 SNV showed enhanced NIF oxidation. Individuals homozygous for rs384467435 SNV showed a reduced TST 6β-hydroxylation. Molecular modelling showed that most of SNVs were distal to CYP3A active site, suggesting indirect effects on the catalytic activity. Collectively, these findings demonstrate the importance of pharmacogenetics studies in veterinary species and suggest bCYP3A genotype variation might affect the fate of xenobiotics in food-producing species such as cattle.
- Published
- 2019
- Full Text
- View/download PDF
43. The human long non-coding RNA gene RMRP has pleiotropic effects and regulates cell-cycle progression at G2.
- Author
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Vakkilainen S, Skoog T, Einarsdottir E, Middleton A, Pekkinen M, Öhman T, Katayama S, Krjutškov K, Kovanen PE, Varjosalo M, Lindqvist A, Kere J, and Mäkitie O
- Subjects
- Adult, Apoptosis genetics, Down-Regulation genetics, Endoribonucleases genetics, Fibroblasts physiology, Hair abnormalities, Hirschsprung Disease genetics, Humans, Immunologic Deficiency Syndromes genetics, Lymphocytes physiology, Osteochondrodysplasias congenital, Osteochondrodysplasias genetics, Phosphatidylinositol 3-Kinases genetics, Primary Immunodeficiency Diseases genetics, Signal Transduction genetics, Transcriptome genetics, Up-Regulation genetics, G2 Phase genetics, RNA, Long Noncoding genetics
- Abstract
RMRP was the first non-coding nuclear RNA gene implicated in a disease. Its mutations cause cartilage-hair hypoplasia (CHH), an autosomal recessive skeletal dysplasia with growth failure, immunodeficiency, and a high risk for malignancies. This study aimed to gain further insight into the role of RNA Component of Mitochondrial RNA Processing Endoribonuclease (RMRP) in cellular physiology and disease pathogenesis. We combined transcriptome analysis with single-cell analysis using fibroblasts from CHH patients and healthy controls. To directly assess cell cycle progression, we followed CHH fibroblasts by pulse-labeling and time-lapse microscopy. Transcriptome analysis identified 35 significantly upregulated and 130 downregulated genes in CHH fibroblasts. The downregulated genes were significantly connected to the cell cycle. Multiple other pathways, involving regulation of apoptosis, bone and cartilage formation, and lymphocyte function, were also affected, as well as PI3K-Akt signaling. Cell-cycle studies indicated that the CHH cells were delayed specifically in the passage from G2 phase to mitosis. Our findings expand the mechanistic understanding of CHH, indicate possible pathways for therapeutic intervention and add to the limited understanding of the functions of RMRP.
- Published
- 2019
- Full Text
- View/download PDF
44. Musical playschool activities are linked to faster auditory development during preschool-age: a longitudinal ERP study.
- Author
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Putkinen V, Tervaniemi M, and Huotilainen M
- Subjects
- Acoustic Stimulation, Brain physiology, Child, Child, Preschool, Electroencephalography, Evoked Potentials, Evoked Potentials, Auditory, Female, Humans, Longitudinal Studies, Male, Auditory Perception, Child Development, Music
- Abstract
The influence of musical experience on brain development has been mostly studied in school-aged children with formal musical training while little is known about the possible effects of less formal musical activities typical for preschool-aged children (e.g., before the age of seven). In the current study, we investigated whether the amount of musical group activities is reflected in the maturation of neural sound discrimination from toddler to preschool-age. Specifically, we recorded event-related potentials longitudinally (84 recordings from 33 children) in a mismatch negativity (MMN) paradigm to different musically relevant sound changes at ages 2-3, 4-5 and 6-7 years from children who attended a musical playschool throughout the follow-up period and children with shorter attendance to the same playschool. In the first group, we found a gradual positive to negative shift in the polarities of the mismatch responses while the latter group showed little evidence of age-related changes in neural sound discrimination. The current study indicates that the maturation of sound encoding indexed by the MMN may be more protracted than once thought and provides first longitudinal evidence that even quite informal musical group activities facilitate the development of neural sound discrimination during early childhood.
- Published
- 2019
- Full Text
- View/download PDF
45. The effect of autophagy on the survival and invasive activity of Eimeria tenella sporozoites.
- Author
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Qi N, Liao S, Abuzeid AMI, Li J, Wu C, Lv M, Lin X, Hu J, Yu L, Xiao W, Sun M, and Li G
- Subjects
- Adenine analogs & derivatives, Adenine pharmacology, Adenosine Triphosphate metabolism, Autophagosomes drug effects, Autophagy drug effects, Eimeria tenella drug effects, Sirolimus pharmacology, Sporozoites drug effects, Autophagosomes metabolism, Autophagy physiology, Eimeria tenella metabolism, Sporozoites metabolism
- Abstract
Autophagy is a cellular process that is vital for the maintenance of homeostasis in eukaryotic cells. Currently, autophagy-related genes (atgs) in the Eimeria tenella genome database have been reported, but very little is known about the effects of autophagy on the survival and invasive activity of this protozoan. In this study, we investigated the autophagy in E. tenella sporozoites under starvation and autophagy-modulators treatments and evaluated the autophagy influence on cellular adenosine triphosphate (ATP) levels, the survival rate and the invasive activity of the sporozoites. The results showed that the autophagy could be induced in the sporozoites by starvation or inducer rapamycin (RP), but it could be inhibited by 3-methyladenine (3-MA) treatment. The sporozoites after starvation and RP-treatment displayed punctate signals of EtATG8 and formed autophagosomes. The survival rate of the sporozoites under starvation was significantly lower than that in the control group, whereas the ATP levels in sporozoite were far greater than those in the control. The quantitative real-time reverse transcriptase polymerase chain reaction (qRT-PCR) showed that the invasive activity of the sporozoites was up- and down-regulated by RP and 3-MA induction, respectively. Our results indicate that autophagy has effects on the survival and invasive activity of E. tenella sporozoites, which may provide new insights into anti-coccidial drugs.
- Published
- 2019
- Full Text
- View/download PDF
46. Hemodynamic responses to emotional speech in two-month-old infants imaged using diffuse optical tomography.
- Author
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Shekhar S, Maria A, Kotilahti K, Huotilainen M, Heiskala J, Tuulari JJ, Hirvi P, Karlsson L, Karlsson H, and Nissilä I
- Subjects
- Anger, Brain Mapping methods, Happiness, Hemoglobins analysis, Humans, Infant, Parietal Lobe, Temporal Lobe, Emotions physiology, Hemodynamics physiology, Speech physiology, Tomography, Optical methods
- Abstract
Emotional speech is one of the principal forms of social communication in humans. In this study, we investigated neural processing of emotional speech (happy, angry, sad and neutral) in the left hemisphere of 21 two-month-old infants using diffuse optical tomography. Reconstructed total hemoglobin (HbT) images were analysed using adaptive voxel-based clustering and region-of-interest (ROI) analysis. We found a distributed happy > neutral response within the temporo-parietal cortex, peaking in the anterior temporal cortex; a negative HbT response to emotional speech (the average of the emotional speech conditions < baseline) in the temporo-parietal cortex, neutral > angry in the anterior superior temporal sulcus (STS), happy > angry in the superior temporal gyrus and posterior superior temporal sulcus, angry < baseline in the insula, superior temporal sulcus and superior temporal gyrus and happy < baseline in the anterior insula. These results suggest that left STS is more sensitive to happy speech as compared to angry speech, indicating that it might play an important role in processing positive emotions in two-month-old infants. Furthermore, happy speech (relative to neutral) seems to elicit more activation in the temporo-parietal cortex, thereby suggesting enhanced sensitivity of temporo-parietal cortex to positive emotional stimuli at this stage of infant development.
- Published
- 2019
- Full Text
- View/download PDF
47. SIRT1 activation attenuates α cell hyperplasia, hyperglucagonaemia and hyperglycaemia in STZ-diabetic mice.
- Author
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Zhang Y, Thai K, Jin T, Woo M, and Gilbert RE
- Subjects
- Anilides pharmacology, Animals, Blood Glucose analysis, Hyperglycemia etiology, Hyperglycemia metabolism, Hyperplasia etiology, Hyperplasia metabolism, Insulin metabolism, Male, Mice, Sirtuin 1 antagonists & inhibitors, Sirtuin 1 genetics, Thiazoles pharmacology, Diabetes Mellitus, Experimental complications, Glucagon metabolism, Hyperglycemia prevention & control, Hyperplasia prevention & control, Sirtuin 1 metabolism
- Abstract
The NAD
+ -dependent lysine deacetylase, Sirtuin 1 (SIRT1), plays a central role in metabolic regulation. With type 1 diabetes a disease that is characterised by metabolic dysregulation, we sought to assess the impact of SIRT1 activation in experimental, streptozotocin (STZ)-induced diabetes. CD1 mice with and without STZ-induced diabetes were randomized to receive the SIRT1 activating compound, SRT3025, or vehicle over 20 weeks. Vehicle treated STZ-CD1 mice developed severe hyperglycaemia with near-absent circulating insulin and widespread beta cell loss in association with hyperglucagonaemia and expanded islet alpha cell mass. Without affecting ß-cell mass or circulating insulin, diabetic mice that received SRT3025 had substantially improved glycaemic control with greatly reduced islet α cell mass and lower plasma glucagon concentrations. Consistent with reduced glucagon abundance, the diabetes-associated overexpression of key gluconeogenic enzymes, glucose-6-phosphatase and PEPCK were also lowered by SRT3025. Incubating cultured α cells with SRT3025 diminished their glucagon secretion and proliferative activity in association with a reduction in the α cell associated transcription factor, Aristaless Related Homeobox (Arx). By reducing the paradoxical increase in glucagon, SIRT1 activation may offer a new, α-cell centric approach to the treatment of type 1 diabetes.- Published
- 2018
- Full Text
- View/download PDF
48. Understorey Rhododendron tomentosum and Leaf Trichome Density Affect Mountain Birch VOC Emissions in the Subarctic.
- Author
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Mofikoya AO, Miura K, Ghimire RP, Blande JD, Kivimäenpää M, Holopainen T, and Holopainen JK
- Subjects
- Finland, Plant Leaves chemistry, Sesquiterpenes analysis, Trichomes chemistry, Betula chemistry, Monoterpenes analysis, Rhododendron chemistry, Volatile Organic Compounds analysis
- Abstract
Subarctic vegetation is composed of mountain birch [Betula pubescens ssp. czerepanovii (MB)] forests with shrubs and other species growing in the understorey. The effects of the presence and density of one understorey shrub, Rhododendron tomentosum (RT), on the volatile emissions of MB, were investigated in a Finnish subarctic forest site in early and late growing season. Only MB trees with an RT-understorey emitted the RT-specific sesquiterpenoids, palustrol, ledol and aromadendrene. Myrcene, which is the most abundant RT-monoterpene was also emitted in higher quantities by MB trees with an RT-understorey. The effect of RT understorey density on the recovery of RT compounds from MB branches was evident only during the late season when sampling temperature, as well as RT emissions, were higher. MB sesquiterpene and total emission rates decreased from early season to late season, while monoterpene emission rate increased. Both RT and MB terpenoid emission rates were linked to density of foliar glandular trichomes, which deteriorated over the season on MB leaves and emerged with new leaves in the late season in RT. We show that sesquiterpene and monoterpene compounds emitted by understorey vegetation are adsorbed and re-released by MB, strongly affecting the MB volatile emission profile.
- Published
- 2018
- Full Text
- View/download PDF
49. A new meroterpenoid functions as an anti-tumor agent in hepatoma cells by downregulating mTOR activation and inhibiting EMT.
- Author
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Wan H, Li J, Zhang K, Zou X, Ge L, Zhu F, Zhou H, Gong M, Wang T, Chen D, Peng S, Zhou B, and Zeng X
- Subjects
- Antigens, CD genetics, Antigens, CD metabolism, Antineoplastic Agents, Phytogenic isolation & purification, Cadherins genetics, Cadherins metabolism, Carcinoma, Hepatocellular genetics, Carcinoma, Hepatocellular metabolism, Carcinoma, Hepatocellular pathology, Cell Line, Tumor, Cell Movement drug effects, Cell Proliferation drug effects, Epithelial-Mesenchymal Transition genetics, Humans, Lithospermum chemistry, Liver Neoplasms genetics, Liver Neoplasms metabolism, Liver Neoplasms pathology, Plant Extracts chemistry, Signal Transduction, TOR Serine-Threonine Kinases antagonists & inhibitors, TOR Serine-Threonine Kinases metabolism, Terpenes isolation & purification, Tumor Burden drug effects, Vimentin genetics, Vimentin metabolism, Xenograft Model Antitumor Assays, Zinc Finger E-box-Binding Homeobox 1 genetics, Zinc Finger E-box-Binding Homeobox 1 metabolism, beta Catenin genetics, beta Catenin metabolism, Antineoplastic Agents, Phytogenic pharmacology, Carcinoma, Hepatocellular drug therapy, Epithelial-Mesenchymal Transition drug effects, Gene Expression Regulation, Neoplastic, Liver Neoplasms drug therapy, TOR Serine-Threonine Kinases genetics, Terpenes pharmacology
- Abstract
Liver cancer, also known as primary liver cancer, is cancer that starts in the liver. JNU-144, a new meroterpenoid purified from Lithospermum erythrorhizon, has exhibited promising anticancer activity; however, the molecular mechanisms of action of JNU-144 on malignant cells remain unclear. Our studies revealed that JNU-144 suppressed cell viability and proliferation in hepatoma cells by downregulating mTOR activation. Meanwhile, JNU-144 activated the intrinsic apoptosis pathway and subsequently triggered apoptotic cell death in SMMC-7721 cells. We also found that JNU-144 inhibited the epithelial-mesenchymal transition in both SMMC-7721 and HepG2 cells through reprogramming of epithelial-mesenchymal transition (EMT)-related gene expression or regulating protein instability. These findings indicate that JNU-144 exerts potent anticancer activity in hepatoma cells and may be developed as a potential therapeutic drug.
- Published
- 2018
- Full Text
- View/download PDF
50. Patient stratification in clinical glaucoma trials using the individual tear proteome.
- Author
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Nättinen J, Jylhä A, Aapola U, Parkkari M, Mikhailova A, Beuerman RW, and Uusitalo H
- Subjects
- Aged, Antihypertensive Agents adverse effects, Antihypertensive Agents therapeutic use, Female, Humans, Latanoprost adverse effects, Latanoprost therapeutic use, Male, Middle Aged, Prostaglandins F adverse effects, Prostaglandins F therapeutic use, Benzalkonium Compounds adverse effects, Glaucoma drug therapy, Preservatives, Pharmaceutical adverse effects, Proteome analysis, Tears metabolism
- Abstract
Glaucoma patients are prone to concomitant ocular surface diseases; however, switching from preserved to preservative-free medication can often alleviate these symptoms. The objective of this study was to examine how the adverse effects and tear proteome change for glaucoma patients (n = 28) during a 12-month drug switch from preserved latanoprost (Xalatan) to preservative-free tafluprost (Taflotan). We hypothesized that patient stratification could help identify novel recovery patterns in both tear proteomics and clinical data. In order to accomplish patient stratification, we implemented sequential window acquisition of all theoretical mass spectrometry (SWATH-MS) as a tool for quantitative analysis of individual tear protein profiles. During each visit (baseline and four follow-up visits), the patients' tears were sampled and the state of their ocular surface was evaluated clinically. Altogether 785 proteins were quantified from each tear sample using SWATH strategy and as these protein expression levels were compared between baseline and 12-month follow-up, three distinct patient groups were identified. We evaluated how these patient groups differed in their protein expression levels at baseline and discovered that the patients with increased levels of pro-inflammatory proteins and decreased levels of protective proteins benefitted most from the medication switch.
- Published
- 2018
- Full Text
- View/download PDF
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