28 results on '"M., Irfan"'
Search Results
2. An adaptable and personalized framework for top-N course recommendations in online learning
- Author
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Samina Amin, M. Irfan Uddin, Ala Abdulsalam Alarood, Wali Khan Mashwani, Ahmed Omar Alzahrani, and Hamdan Ahmed Alzahrani
- Subjects
Reinforcement learning ,Deep reinforcement learning ,Online learning ,e-learning ,MOOC ,Recommender system ,Medicine ,Science - Abstract
Abstract In recent years, the proliferation of Massive Open Online Courses (MOOC) platforms on a global scale has been remarkable. Learners can now meet their learning demands with the help of MOOC. However, learners might not understand the course material well if they have access to a lot of information due to their inadequate expertise and cognitive ability. Personalized Recommender Systems (RSs), a cutting-edge technology, can assist in addressing this issue. It greatly increases resource acquisition through personalized availability for various people of all ages. Intelligent learning methods, such as machine learning and Reinforcement Learning (RL) can be used in RS challenges. However, machine learning needs supervised data and classical RL is not suitable for multi-task recommendations in online learning platforms. To address these challenges, the proposed framework integrates a Deep Reinforcement Learning (DRL) and multi-agent approach. This adaptive system personalizes the learning experience by considering key factors such as learner sentiments, learning style, preferences, competency, and adaptive difficulty levels. We formulate the interactive RS problem using a DRL-based Actor-Critic model named DRR, treating recommendations as a sequential decision-making process. The DRR enables the system to provide top-N course recommendations and personalized learning paths, enriching the student's experience. Extensive experiments on a MOOC dataset such as the 100 K Coursera course review validate the proposed DRR model, demonstrating its superiority over baseline models in major evaluation metrics for long-term recommendations. The outcomes of this research contribute to the field of e-learning technology, guiding the design and implementation of course RSs, to facilitate personalized and relevant recommendations for online learning students.
- Published
- 2024
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- View/download PDF
3. Triacontanol regulates morphological traits and enzymatic activities of salinity affected hot pepper plants
- Author
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Mubeen Sarwar, Sumreen Anjum, Muhammad Waqar Alam, Qurban Ali, C. M. Ayyub, Muhammad Saleem Haider, M. Irfan Ashraf, and Wajid Mahboob
- Subjects
Medicine ,Science - Abstract
Abstract Potential role of triacontanol applied as a foliar treatment to ameliorate the adverse effects of salinity on hot pepper plants was evaluated. In this pot experiment, hot pepper plants under 75 mM NaCl stress environment were subjected to foliar application of 25, 50, and 75 µM triacontanol treatments; whereas, untreated plants were taken as control. Salt stress had a significant impact on morphological characteristics, photosynthetic pigments, gas exchange attributes, MDA content, antioxidants activities, electrolytes leakage, vitamin C, soluble protein, and proline contents. All triacontanol treatments significantly mitigated the adversative effects of salinity on hot pepper plants; however, foliar application triacontanol at 75 µM had considerably improved the growth of hot pepper plants in terms of plant height, shoot length, leaf area, plant fresh/dry biomasses by modulating above mentioned physio-biochemical traits. While, improvement in gas exchange properties, chlorophyll, carotenoid contents, increased proline contents coupled with higher SOD and CAT activities were observed in response to 75 µM triacontanol followed by 50 µM triacontanol treatment. MDA and H2O2 contents were decreased significantly in hot pepper plants sprayed with 75 µM triacontanol followed by 50 µM triacontanol foliar treatment. Meanwhile, root and shoot lengths were maximum in 50 µM triacontanol sprayed hot pepper plants along with enhanced APX activity on exposure to salt stress. In crux, exogenous application triacontanol treatments improved hot pepper performance under salinity, however,75 µM triacontanol treatment evidently was more effective in mitigating the lethal impact of saline stress via controlling the ROS generation and increment in antioxidant enzyme activities.
- Published
- 2022
- Full Text
- View/download PDF
4. Triacontanol regulates morphological traits and enzymatic activities of salinity affected hot pepper plants
- Author
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Sarwar, Mubeen, Anjum, Sumreen, Alam, Muhammad Waqar, Ali, Qurban, Ayyub, C. M., Haider, Muhammad Saleem, Ashraf, M. Irfan, and Mahboob, Wajid
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- 2022
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5. Parthenium hysterophorus steps up Ca-regulatory pathway in defence against highlight intensities
- Author
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Ahmad, Javed, Baig, M. Affan, Amna, Alaraidh, Ibrahim A., Alsahli, Abdulaziz A., and Qureshi, M. Irfan
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- 2020
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6. Parthenium hysterophorus steps up Ca-regulatory pathway in defence against highlight intensities
- Author
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Ibrahim A. Alaraidh, M. Affan Baig, Abdulaziz Abdullah Alsahli, Amna, Javed Ahmad, and M. Irfan Qureshi
- Subjects
0106 biological sciences ,0301 basic medicine ,Antioxidant ,Light ,Proline ,medicine.medical_treatment ,Parthenium hysterophorus ,lcsh:Medicine ,Asteraceae ,Photosynthesis ,01 natural sciences ,Article ,Antioxidants ,03 medical and health sciences ,Superoxides ,Light responses ,medicine ,Sugar ,lcsh:Science ,Abiotic component ,Multidisciplinary ,biology ,Chemistry ,lcsh:R ,Dose-Response Relationship, Radiation ,biology.organism_classification ,Environmental sciences ,Plant Leaves ,Chloroplast ,Oxidative Stress ,030104 developmental biology ,Biochemistry ,Osmolyte ,Calcium ,lcsh:Q ,Metabolic Networks and Pathways ,010606 plant biology & botany - Abstract
Parthenium hysterophorus exhibits tolerance to a great extent against abiotic stresses including high light intensities. In this study, P. hysterophorus was subjected to three different light intensities viz. control (CL, 250 µmol photons m−2 s−1), moderately high (ML, 500 µmol photons m−2 s−1) and high (HL, 1000 µmol photons m−2 s−1) for assessment of biochemical and physiological responses at 3 and 5 days after treatment (DAT). Proteomic responses were also observed at 5 DAT. Level of oxidative stress marker, abundance of H2O2 and O2− was highest in leaves exposed to HL followed by ML treatment. Biomass accumulation, photosynthetic parameters, chloroplast and mitochondrial integrity were also affected by both ML and HL treatments. Differential protein expression data showed modulation of thirty-eight proteins in ML and HL intensities. P. hysterophorus exhibited good ability to survive in ML then HL treatment as demonstrated by enhancement of the antioxidant system and photosynthesis. Furthermore, P. hysterophorus mobilized some key proteins related to calcium signaling, which in turn coordinate physiological homeostasis under stress. Proline and total soluble sugar content were high under stress; however, results of simulated experiment of our study indicate such accumulation of osmolytes may inhibit photon-availability to chloroplast. These results clarify our understanding of the mechanisms underlying the light stress tolerance of P. hysterophorus.
- Published
- 2020
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7. Triacontanol regulates morphological traits and enzymatic activities of salinity affected hot pepper plants
- Author
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Mubeen Sarwar, Sumreen Anjum, Muhammad Waqar Alam, Qurban Ali, C. M. Ayyub, Muhammad Saleem Haider, M. Irfan Ashraf, and Wajid Mahboob
- Subjects
Salinity ,Multidisciplinary ,Proline ,fungi ,food and beverages ,Fatty Alcohols ,Capsicum ,Antioxidants - Abstract
Potential role of triacontanol applied as a foliar treatment to ameliorate the adverse effects of salinity on hot pepper plants was evaluated. In this pot experiment, hot pepper plants under 75 mM NaCl stress environment were subjected to foliar application of 25, 50, and 75 µM triacontanol treatments; whereas, untreated plants were taken as control. Salt stress had a significant impact on morphological characteristics, photosynthetic pigments, gas exchange attributes, MDA content, antioxidants activities, electrolytes leakage, vitamin C, soluble protein, and proline contents. All triacontanol treatments significantly mitigated the adversative effects of salinity on hot pepper plants; however, foliar application triacontanol at 75 µM had considerably improved the growth of hot pepper plants in terms of plant height, shoot length, leaf area, plant fresh/dry biomasses by modulating above mentioned physio-biochemical traits. While, improvement in gas exchange properties, chlorophyll, carotenoid contents, increased proline contents coupled with higher SOD and CAT activities were observed in response to 75 µM triacontanol followed by 50 µM triacontanol treatment. MDA and H2O2 contents were decreased significantly in hot pepper plants sprayed with 75 µM triacontanol followed by 50 µM triacontanol foliar treatment. Meanwhile, root and shoot lengths were maximum in 50 µM triacontanol sprayed hot pepper plants along with enhanced APX activity on exposure to salt stress. In crux, exogenous application triacontanol treatments improved hot pepper performance under salinity, however,75 µM triacontanol treatment evidently was more effective in mitigating the lethal impact of saline stress via controlling the ROS generation and increment in antioxidant enzyme activities.
- Published
- 2021
8. Optimization of waste biomass demineralization through response surface methodology and enhancement of thermochemical and fusion properties.
- Author
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Tabish AN, Irfan M, Irshad M, Hussain MA, Zeb H, Jahangir S, Shahzad A, Siddiqi MH, Mujtaba MA, Fouad Y, and Kalam MA
- Abstract
This study examines the impact of leaching with dilute hydrochloric acid solution on the reduction of ash content and the thermal degradation behavior of sugarcane bagasse. Response surface methodology (RSM) was used to statistically design the experiments and investigate the effect of three independent variables: treatment time, solid-to-liquid ratio, and reagent concentration. The leaching conditions were further optimized and experimentally validated for maximum ash reduction for suitability of treated biomass as feedstock for thermochemical conversion technologies. Reagent concentration and treatment time directly affected ash reduction, while the solid-to-liquid ratio inversely influenced it. Concentration had the highest impact, and treatment duration had the least. The maximum 78.2% ash reduction was achieved by treating the biomass with 1 M HCl for 80 min at a solid-to-liquid ratio of 50:1 (wt/vol). This ash reduction also resulted in a 9.82% increase in higher heating value (HHV). Hemicellulose hydrolysis during leaching was observed through chemical composition and Fourier-transform infrared spectroscopy (FTIR). Ash fusion temperatures increased, indicating more thermally stable biomass. Thermogravimetric analysis (TGA) showed elevated maximum degradation temperature and activation energy., (© 2024. The Author(s).)
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- 2024
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9. HPV DNA status and clinical history of patients are supplements for accurate reporting of the cytological Pap smear.
- Author
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Ali M, Sinha R, Kumar A, Karim S, Irfan M, Kumar S, Sinha S, Kumar A, Ghosh A, and Singh M
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- Humans, Female, Adult, Middle Aged, Uterine Cervical Dysplasia virology, Uterine Cervical Dysplasia diagnosis, Uterine Cervical Dysplasia pathology, Vaginal Smears, Human papillomavirus 18 genetics, Human papillomavirus 18 isolation & purification, Human papillomavirus 16 genetics, Human papillomavirus 16 isolation & purification, Young Adult, Aged, Biopsy, Papanicolaou Test, Uterine Cervical Neoplasms virology, Uterine Cervical Neoplasms diagnosis, Uterine Cervical Neoplasms pathology, DNA, Viral analysis, DNA, Viral genetics, Papillomavirus Infections virology, Papillomavirus Infections diagnosis
- Abstract
The present study was aimed at showing the importance of HPV DNA status and the clinical history of the patients required by the cytologist for accurate reporting. A total of 1250 symptomatic women who attended the gynaecology outpatient department of the Mahavir Cancer Sansthan and Nalanda Medical College, Patna, for pap smear examinations were screened and recruited for the study. Due to highly clinical symptoms out of the negative with inflammatory smears reported, one hundred and ten patients were randomly advised for biopsy and HPV 16/18 DNA analysis by a gynaecologist to correlate negative smears included in the study. Pap smear reports revealed that 1178 (94.24%) were negative for intraepithelial lesions (NILM) with inflammatory smears, 23 (1.84%) smears showed low-grade squamous intraepithelial lesions (LSIL), 12 (0.96%) smears showed high-grade squamous intraepithelial lesions, and 37 (2.96%) smears showed an atypical squamous cell of undetermined significance (ASC-US). A biopsy of 110 out of 1178 (NILM) patients revealed that 15 (13.63%) women had cervical cancer, 29 women had CIN I, 17 women had CIN II + CIN III, 35 women had benign cervical changes, and 14 women had haemorrhages. On the other hand, HPV 16/18 DNA was detected as positive in 87 out of 110. The high positivity of HPV in biopsied cases where frank cervical cancer and at-risk cancer were also observed in the negative smear-screened patients reveals that the HPV status and clinical history of the patients will be quite helpful to the cytologist for accurate reporting, and suggests that a negative HPV DNA result may be a stronger predictor of cervical cancer risk than a negative Pap test., (© 2024. The Author(s).)
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- 2024
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10. Intercomparison of deep learning models in predicting streamflow patterns: insight from CMIP6.
- Author
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Anwar H, Khan AU, Ullah B, Taha ATB, Najeh T, Badshah MU, Ghanim AAJ, and Irfan M
- Abstract
This research was carried out to predict daily streamflow for the Swat River Basin, Pakistan through four deep learning (DL) models: Feed Forward Artificial Neural Networks (FFANN), Seasonal Artificial Neural Networks (SANN), Time Lag Artificial Neural Networks (TLANN) and Long Short-Term Memory (LSTM) under two Shared Socioeconomic Pathways (SSPs) 585 and 245. Taylor Diagram, Random Forest, and Gradient Boosting techniques were used to select the best combination of General Circulation Models (GCMs) for Multi-Model Ensemble (MME) computation. MME was computed via the Random Forest technique for Maximum Temperature (T
max ), Minimum Temperature (Tmin ), and precipitation for the aforementioned three techniques. The best MME for Tmax , Tmin , and precipitation was rendered by Compromise Programming. The DL models were trained and tested using observed precipitation and temperature as independent variables and discharge as dependent variables. The results of deep learning models were evaluated using statistical performance indicators such as root mean square error (RMSE), mean square error (MSE), mean absolute error (MAE), and coefficient of determination (R2 ). The TLANN demonstrated superior performance compared to the other models based on RMSE, MSE, MAE, and R2 during training (65.25 m3 /s, 4256.97 m3 /s, 46.793 m3 /s and 0.7978) and testing (72.06 m3 /s, 5192.95 m3 /s, 51.363 m3 /s and 0.7443) respectively. Subsequently, TLANN was utilized to make predictions based on MME of SSP245 and SSP585 scenarios for future streamflow until the year 2100. These results can be used for planning, management, and policy-making regarding water resources projects in the study area., (© 2024. The Author(s).)- Published
- 2024
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11. Nonparametric mixed exponentially weighted moving average-moving average control chart.
- Author
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Raza MA, Amin A, Aslam M, Nawaz T, Irfan M, and Tariq F
- Abstract
This research designed a distribution-free mixed exponentially weighted moving average-moving average (EWMA-MA) control chart based on signed-rank statistic to effectively identify changes in the process location. The EWMA-MA charting statistic assigns more weight to information obtained from the recent w samples and exponentially decreasing weights to information accumulated from all other past samples. The run-length profile of the proposed chart is obtained by employing Monte Carlo simulation techniques. The effectiveness of the proposed chart is evaluated under symmetrical distributions using a variety of individual and overall performance measures. The analysis of the run-length profile indicates that the proposed chart performs better than the existing control charts discussed in the literature. Additionally, an application from a gas turbine is provided to demonstrate how the proposed chart can be used in practice., (© 2024. The Author(s).)
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- 2024
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12. Exploration of nonlinear optical properties of 4-methyl-4H-1,2,4-triazol-3-yl)thio)-N-phenylpropanamide based derivatives: experimental and DFT approach.
- Author
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Irfan M, Khan HA, Bibi S, Wu G, Ali A, Khan SG, Alhokbany N, Rasool F, and Chen K
- Abstract
Triazoles, nitrogen-containing heterocycles, have gained attention for their applications in medicinal chemistry, drug discovery, agrochemicals, and material sciences. In the current study, we synthesized novel derivatives of N-substituted 2-((5-(3-bromophenyl)-4-methyl-4H-1,2,4-triazol-3-yl)thio)-N-phenylpropanamide and conducted a comprehensive investigation using density functional theory (DFT). These novel structural hybrids of 1,2,4-triazole were synthesized through the multi-step chemical modifications of 3-bromobenzoic acid (1). Initially, compound 1 was converted into its methyl-3-bromobenzoate (2) which was then transformed into 3-bromobenzohydrazide (3). The final step involved the cyclization of compound 3, producing its 1,2,4-triazole derivative (4). This intermediate was then coupled with different electrophiles, resulting in the formation of the final derivatives (7a-7c). Additionally, the characterization of these triazole-based compounds (7a, 7b, and 7c) were carried out using techniques such as IR, HNMR, and UV-visible spectroscopy to understand their structural and spectroscopic properties. The DFT study utilized M06/6-311G(d,p) functional to investigate geometrical parameters, HOMO-LUMO energies, natural bond orbital analyses, transition density matrix (TDM), density of states, and nonlinear optical (NLO) properties. The FMO analysis revealed that compound 7c exhibited the lowest band gap value (4.618 eV). Notably, compound 7c exhibited significant linear polarizability (4.195 > × 10
-23 ) and first and second hyperpolarizabilities (6.317 > × 10-30 , 4.314 × 10-35 ), signifying its potential for nonlinear optical applications. These NLO characteristics imply that each of our compounds, especially 7c, plays a crucial part in fabricating materials showing promising NLO properties for optoelectronic applications., (© 2024. The Author(s).)- Published
- 2024
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13. Study of drug resistance-associated genetic mutations, and phylo-genetic analysis of HCV in the Province of Sindh, Pakistan.
- Author
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Faiz S, Irfan M, Farooq S, Khan IA, Iqbal H, Wahab AT, Shakeel M, Gong P, Iftner T, and Choudhary MI
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- Humans, Pakistan epidemiology, Phylogeny, Hepacivirus, Genotype, Drug Resistance, Viral genetics, Viral Nonstructural Proteins genetics, Mutation, Antiviral Agents pharmacology, Antiviral Agents therapeutic use, Hepatitis C, Chronic drug therapy, Hepatitis C, Chronic epidemiology
- Abstract
Current management of HCV infection is based on Direct-Acting Antiviral Drugs (DAAs). However, resistance-associated mutations, especially in the NS3 and NS5B regions are gradually decreasing the efficacy of DAAs. The aim of the current study was to identify such mutations in the NS3, and NS5B genes in DAAs treatment-naïve Pakistani chronic HCV 3a patients. Peripheral blood samples were collected from 233 chronic HCV 3a patients at different tertiary care hospitals in Karachi, Pakistan, between August 2020 to September 2021. PCR-amplified target regions of the NS3/NS5B gene were subjected to Sanger sequencing to identify resistance-associated mutations. Phylogenetic analysis of the identified amino acid sequences was performed using HCV3a sequences of the global population in the virus pathogen resource (VIPR) database. Sequence analysis identified five amino acid mutations, Leu36Pro, Gln41His, Gln80Lys/Arg, Ala156Tyr, and Gln168Arg in the NS3 region, and two mutations Leu159Phe and Cys316Arg in the NS5B region. Phylogenetic analysis revealed a high genetic diversity in the studied isolates. Overall, the prevalence of resistance-associated substitutions was almost similar to other geographic regions worldwide. This data could be helpful in selecting the most effective treatment regimen for HCV chronically infected people in Pakistan., (© 2023. The Author(s).)
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- 2023
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14. Distance and weightage-based identification of most critical and vulnerable locations of surface water pollution in Kabul river tributaries.
- Author
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Irfan M, Mahboob Alam M, Khan S, Khan I, and Eldin SM
- Abstract
Water plays a key role in the economic growth of an agricultural country. Pakistan is a farming country that uses almost 90% of its water resources for agriculture. Khyber Pakhtunkhwa (KPK) province of Pakistan has extensive surface water resources. In addition to using groundwater resources for irrigation, large parts of its flat plains are irrigated with the Kabul River surface water. Due to large population growth and unregulated small/local scale industries in the region, surface water quality deteriorates with time, which affects people's health when polluted surface water is used for irrigation purposes. This research investigates the surface water quality of Kabul River's different tributaries. It identifies the most critical and vulnerable locations regarding water quality using the weightage-based identification method and distance-based iteration method, respectively. The Bara River exhibited the most critical location, surpassing the threshold values by a considerable margin in at least seven water quality parameters. The maximum seven critical values determined against the Bara River using the weightage-based method, i.e., 17.5, 5.95, 7.35, 27.65, 1.75, 0.35, and 10.45 for total alkalinity, sodium, total hardness, magnesium, total suspended solids, biological oxygen demand (BOD), and turbidity. The Khairabad station, where the Kabul River meets the Indus River, was identified as vulnerable due to elevated levels of total suspended solids, hardness, sulfate, sodium, and magnesium using distance-based methods. The locations, i.e. Adezai, Jindi, Pabbi, and Warsak Dam, appeared critical and vulnerable due to the prevalence of small-scale industries on their bank and high population densities. All the results are finally compared with the interpolated values over the entire region using Kriging interpolation to identify critical and vulnerable areas accurately. The results from the distance and weightage-based methods aligned with the physical reality on the ground further validate the results. The critical and vulnerable locations required immediate attention and preventive measures to address the deteriorating water quality parameters by installing monitoring stations and treatment plants to stop further contamination of the particular parameter., (© 2023. The Author(s).)
- Published
- 2023
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15. Production of combustible fuels and carbon nanotubes from plastic wastes using an in-situ catalytic microwave pyrolysis process.
- Author
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Irfan M, Saleem R, Shoukat B, Hussain H, Shukrullah S, Naz MY, Rahman S, Ghanim AAJ, Nawalany G, and Jakubowski T
- Abstract
This study performed in-situ microwave pyrolysis of plastic waste into hydrogen, liquid fuel and carbon nanotubes in the presence of Zeolite Socony Mobil ZSM-5 catalyst. In the presented microwave pyrolysis of plastics, activated carbon was used as a heat susceptor. The microwave power of 1 kW was employed to decompose high-density polyethylene (HDPE) and polypropylene (PP) wastes at moderate temperatures of 400-450 °C. The effect of plastic composition, catalyst loading and plastic type on liquid, gas and solid carbon products was quantified. This in-situ CMP reaction resulted in heavy hydrocarbons, hydrogen gas and carbon nanotubes as a solid residue. A relatively better hydrogen yield of 129.6 mmol/g as a green fuel was possible in this process. FTIR and gas chromatography analysis revealed that liquid product consisted of C
13+ fraction hydrocarbons, such as alkanes, alkanes, and aromatics. TEM micrographs showed tubular-like structural morphology of the solid residue, which was identified as carbon nanotubes (CNTs) during X-ray diffraction analysis. The outer diameter of CNTs ranged from 30 to 93 nm from HDPE, 25-93 nm from PP and 30-54 nm for HDPE-PP mixure. The presented CMP process took just 2-4 min to completely pyrolyze the plastic feedstock into valuable products, leaving no polymeric residue., (© 2023. The Author(s).)- Published
- 2023
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16. C5L2 modulates BDNF production in human dental pulp stem cells via p38α pathway.
- Author
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Irfan M and Chung S
- Subjects
- Humans, Nerve Fibers metabolism, Nerve Regeneration physiology, Stem Cells metabolism, Mitogen-Activated Protein Kinase 14 metabolism, Brain-Derived Neurotrophic Factor metabolism, Dental Pulp metabolism, Receptor, Anaphylatoxin C5a genetics, Receptor, Anaphylatoxin C5a metabolism
- Abstract
Tissue injury affects nerve fibers and triggers an immune response, leading to inflammation. The complement system gets activated during inflammatory conditions and has been reported to be involved in the regeneration process. We have demonstrated that the C5a receptor (C5aR) has crucial roles in regeneration and healing processes including nerve sprouting and hard tissue formation. Another C5a-like 2 receptor (C5AR2; C5L2) has been cloned which is still considered controversial due to limited studies. We previously established that C5L2 regulates brain-derived neurotrophic factor (BDNF) secretion in pulp fibroblasts. However, there is no study available on human dental pulp stem cells (DPSCs), especially in the inflammatory context. Stem cell therapy is an emerging technique to treat and prevent several diseases. DPSCs are a great option to be considered due to their great ability to differentiate into a variety of cells and secrete nerve regeneration factors. Here, we demonstrated that C5L2 modulates BDNF secretion in DPSCs. Our results stated that C5L2 silencing through siRNA could increase BDNF production, which could accelerate the nerve regeneration process. Moreover, stimulation with lipopolysaccharide (LPS) enhanced BDNF production in C5L2 silenced DPSCs. Finally, we quantified BDNF secretion in supernatant and cell lysates using ELISA. Our results showed enhanced BDNF production in C5L2 silenced DPSCs and hampered by the p38
MAPK α inhibitor. Taken together, our data reveal that C5L2 modulates BDNF production in DPSCs via the p38MAPK α pathway., (© 2023. The Author(s).)- Published
- 2023
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17. Insilico prediction and functional analysis of nonsynonymous SNPs in human CTLA4 gene.
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Irfan M, Iqbal T, Hashmi S, Ghani U, and Bhatti A
- Subjects
- Humans, Polymorphism, Single Nucleotide, CTLA-4 Antigen genetics, Epistasis, Genetic, Addison Disease, Arthritis, Juvenile
- Abstract
The CTLA4 receptor is an immune checkpoint involved in the downregulation of T cells. Polymorphisms in this gene have been found to be associated with different diseases like rheumatoid arthritis, autosomal dominant immune dysregulation syndrome, juvenile idiopathic arthritis and autoimmune Addison's disease. Therefore, the identification of polymorphisms that have an effect on the structure and function of CTLA4 gene is important. Here we identified the most damaging missense or non-synonymous SNPs (nsSNPs) that might be crucial for the structure and function of CTLA4 using different bioinformatics tools. These in silico tools included SIFT, PROVEAN, PhD-SNP, PolyPhen-2 followed by MutPred2, I-Mutant 2.0 and ConSurf. The protein structures were predicted using Phyre2 and I-TASSER, while the gene-gene interactions were predicted by GeneMANIA and STRING. Our study identified three damaging missense SNPs rs1553657429, rs1559591863 and rs778534474 in coding region of CTLA4 gene. Among these SNPs the rs1553657429 showed a loss of potential phosphorylation site and was found to be highly conserved. The prediction of gene-gene interaction showed the interaction of CTlA4 with other genes and its importance in different pathways. This investigation of damaging nsSNPs can be considered in future while studying CTLA4 related diseases and can be of great importance in precision medicine., (© 2022. The Author(s).)
- Published
- 2022
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18. Electron-acoustic solitary potential in nonextensive streaming plasma.
- Author
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Khan K, Algahtani O, Irfan M, and Ali A
- Abstract
The linear/nonlinear propagation characteristics of electron-acoustic (EA) solitons are examined in an electron-ion (EI) plasma that contains negative superthermal (dynamical) electrons as well as positively charged ions. By employing the magnetic hydrodynamic (MHD) equations and with the aid of the reductive perturbation technique, a Korteweg-de-Vries (KdV) equation is deduced. The latter admits soliton solution suffering from the superthermal electrons and the streaming flow. The utility of the modified double Laplace decomposition method (MDLDM) leads to approximate wave solutions associated with higher-order perturbation. By imposing finite perturbation on the stationary solution, and with the aid of MDLDM, we have deduced series solution for the electron-acoustic excitations. The latter admits instability and subsequent deformation of the wave profile and can't be noticed in the KdV theory. Numerical analysis reveals that thermal correction due to superthermal electrons reduces the dimensionless phase speed [Formula: see text] for EA wave. Moreover, a random motion spread out the dynamical electron fluid and therefore, gives rise to [Formula: see text]. A degree enhancement in temperature of superthermal (dynamical) electrons tappers of (increase) the wave steeping and the wave dispersion, enhancing (reducing) the pulse amplitude and the spatial extension of the EA solitons. Interestingly, the approximate wave solution suffers oscillation that grows in time. Our results are important for understanding the coherent EA excitation, associated with the streaming effect of electrons in the EI plasma being relevant to the earth's magnetosphere, the ionosphere, the laboratory facilities, etc., (© 2022. The Author(s).)
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- 2022
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19. Author Correction: Unraveling the role of tomato Bcl-2-associated athanogene (BAG) proteins during abiotic stress response and fruit ripening.
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Irfan M, Kumar P, Ahmad I, and Datta A
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- 2022
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20. Complement C5aR/LPS-induced BDNF and NGF modulation in human dental pulp stem cells.
- Author
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Irfan M, Kim JH, Druzinsky RE, Ravindran S, and Chung S
- Subjects
- Humans, Lipopolysaccharides, Mesenchymal Stem Cells metabolism, Nerve Regeneration genetics, Stem Cells physiology, Brain-Derived Neurotrophic Factor metabolism, Dental Pulp cytology, Nerve Growth Factor metabolism, Receptor, Anaphylatoxin C5a physiology, Stem Cells metabolism
- Abstract
Stem cells with the ability to differentiate into a variety of cells and secrete nerve regeneration factors have become an emerging option in nerve regeneration. Dental pulp stem cells (DPSCs) appear to be a good candidate for nerve regeneration given their accessibility, neural crest origin, and neural repair qualities. We have recently demonstrated that the complement C5a system, which is an important mediator of inflammation and tissue regeneration, is activated by lipoteichoic acid-treated pulp fibroblasts, and governs the production of brain-derived nerve growth factor (BDNF). This BDNF secretion promotes neurite outgrowth towards the injury site. Here, we extend our observation to DPSCs and compare their neurogenic ability to bone marrow-derived mesenchymal stem cells (BM-MSCs) under inflammatory stimulation. Our ELISA and immunostaining data demonstrate that blocking the C5a receptor (C5aR) reduced BDNF production in DPSCs, while treatment with C5aR agonist increased the BDNF expression, which suggests that C5aR has a positive regulatory role in the BDNF modulation of DPSCs. Inflammation induced by lipopolysaccharide (LPS) treatment potentiated this effect and is C5aR dependent. Most important, DPSCs produced significantly higher levels of C5aR-mediated BDNF compared to BM-MSCs. Taken together, our data reveal novel roles for C5aR and inflammation in modulation of BDNF and NGF in DPSCs., (© 2022. The Author(s).)
- Published
- 2022
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21. Exogenous application of silicon improves the performance of wheat under terminal heat stress by triggering physio-biochemical mechanisms.
- Author
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Mustafa T, Sattar A, Sher A, Ul-Allah S, Ijaz M, Irfan M, Butt M, and Cheema M
- Abstract
Due to climate change, temperature in late February and early March raised up which cause heat stress at reproductive stage (terminal growth phase of wheat crop) which has become the major causative factor towards low wheat production in arid and semiarid regions. Therefore; strategies need to be adopted for improving terminal heat stress tolerance in wheat. In this study, we assessed whether foliar application of silicon (Si) (2 and 4 mM) at terminal growth phase i.e. heading stage of wheat imposed to heat stress (37 ± 2 °C) under polythene tunnel could improve the performance of wheat. Results of the study revealed that heat stress significantly reduced the photosynthetic pigments (chlorophyll a, b and a + b and carotenoids) leading to a lower grain yield. However, a 4 mM Si application (foliar applied) at heading stage prominently increased the chlorophyll a, b and a + b and carotenoids of flag leaf by improving the activities of enzymatic antioxidants (catalase, peroxidase and superoxide dismutase) and osmoprotectants (soluble sugar protein and proline) under terminal heat stress. Improvements in the performance of wheat (chlorophyll contents, carotenoids, soluble sugar and proteins and proline and yield) with foliar application of Si were also observed under control conditions. Correlation analysis revealed strong association (r > 0.90) of chlorophyll contents and carotenoids with grain and biological yield. Negative correlation (-0.81 < r > -0.63) of physio-biochemical components (antioxidants, proline, soluble sugars and proteins) with yield revealed that under heat stress these components produced in more quantities to alleviate the effects of heat, and Si application also improved these physio biochemical components. In crux, foliar application of Si alleviates the losses in the performance of wheat caused by terminal heat stress by improving the antioxidant mechanism and production of osmoprotectants., (© 2021. The Author(s).)
- Published
- 2021
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22. Unraveling the role of tomato Bcl-2-associated athanogene (BAG) proteins during abiotic stress response and fruit ripening.
- Author
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Irfan M, Kumar P, Ahmad I, and Datta A
- Subjects
- Arabidopsis Proteins genetics, Fruit physiology, Genome, Plant, Mitochondrial Proteins genetics, Molecular Chaperones genetics, Multigene Family, Plant Proteins genetics, Gene Expression Regulation, Plant, Solanum lycopersicum physiology, Plant Proteins metabolism, Stress, Physiological
- Abstract
B-cell lymphoma2 (Bcl-2)-associated athanogene (BAG) family proteins are evolutionary conserved across all eukaryotes. These proteins interact with HSP70/HSC70 and function as co-chaperones during stress response and developmental pathways. Compared to the animal counterpart, the BAG proteins in plants are much less studied and primarily Arabidopsis BAG proteins have been identified and characterized for their role in programmed cell death, homeostasis, growth and development, abiotic and biotic stress response. Here, we have identified BAG protein family (SlBAGs) in tomato, an economically important and a model fruit crop using genome-wide scanning. We have performed phylogenetic analysis, genes architecture assessment, chromosomal location and in silico promoter analysis. Our data suggest that SlBAGs show differential tissue specific expression pattern during plant development particularly fruit development and ripening. Furthermore, we reported that expression of SlBAGs is modulated during abiotic stresses and is regulated by stress hormones ABA and ethylene. In planta subcellular localization reveals their diverse subcellular localization, and many members are localized in nucleus and cytoplasm. Like previous reports, our protein-protein interaction network and yeast two-hybrid analysis uncover that SlBAGs interact with HSP70. The current study provides insights into role of SlBAGs in plant development particualry fruit ripening and abiotic stress response., (© 2021. The Author(s).)
- Published
- 2021
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23. Heavy metals immobilization and improvement in maize (Zea mays L.) growth amended with biochar and compost.
- Author
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Irfan M, Mudassir M, Khan MJ, Dawar KM, Muhammad D, Mian IA, Ali W, Fahad S, Saud S, Hayat Z, Nawaz T, Khan SA, Alam S, Ali B, Banout J, Ahmed S, Mubeen S, Danish S, Datta R, Elgorban AM, and Dewil R
- Abstract
Soil with heavy metals contamination, mainly lead (Pb), cadmium (Cd), and chromium (Cr) is a progressively worldwide alarming environmental problem. Recently, biochar has been used as a soil amendment to remediate contaminated soils, but little work has been done to compare with other organic amendments like compost. We investigated biochar and compost's comparative effect on Pb, Cd, and Cr immobilization in soil, photosynthesis, and growth of maize plants. Ten kg soil was placed in pots and were spiked with Pb, Cd, and Cr at concentrations 20, 10, 20 mg kg
-1 . The biochar and compost treatments included 0, 0.5, 1, 2, and 4% were separately applied to the soil. The crop from pots was harvested after 60 days. The results show that the highest reduction of AB-DTPA extractable Pb, Cd, and Cr in soil was 79%, 61% and 78% with 4% biochar, followed by 61%, 43% and 60% with 4% compost compared to the control, respectively. Similarly, the highest reduction in shoot Pb, Cd, and Cr concentration was 71%, 63% and 78%with 4% biochar, followed by 50%, 50% and 71% with 4% compost than the control, respectively. The maximum increase in shoot and dry root weight, total chlorophyll contents, and gas exchange characteristics were recorded with 4% biochar, followed by 4% compost than the control. The maximum increase in soil organic matter and total nitrogen (N) was recorded at 4% biochar application while available phosphorus and potassium in the soil at 4% compost application. It is concluded that both biochar and compost decreased heavy metals availability in the soil, reducing toxicity in the plant. However, biochar was most effective in reducing heavy metals content in soil and plant compared to compost. In the future, more low-cost, eco-friendly soil remediation methods should be developed for better soil health and plant productivity., (© 2021. The Author(s).)- Published
- 2021
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24. Bacillus pumilus induced tolerance of Maize (Zea mays L.) against Cadmium (Cd) stress.
- Author
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Shahzad A, Qin M, Elahie M, Naeem M, Bashir T, Yasmin H, Younas M, Areeb A, Irfan M, Billah M, Shakoor A, and Zulfiqar S
- Subjects
- Bacillus pumilus pathogenicity, Biodegradation, Environmental, Cadmium metabolism, Seeds drug effects, Seeds metabolism, Seeds microbiology, Soil Pollutants metabolism, Stress, Physiological, Zea mays metabolism, Zea mays microbiology, Bacillus pumilus metabolism, Cadmium toxicity, Soil Pollutants toxicity, Zea mays drug effects
- Abstract
Heavy metals contaminate the soil that alters the properties of soil and negatively affect plants growth. Using microorganism and plant can remove these pollutants from soil. The present investigation was designed to evaluate the induced effect of Bacillus pumilus on maize plant in Cadmium (Cd) contaminated soil. Three different concentrations of Cd (i.e. 0.25, 0.50 and 0.75 mg kg
-1 ) were applied in soil under which maize plants were grown. The germination percentage, shoot length, leaf length, number of leaves, root length, fresh weight and nutrient uptake by maize plant were determined. The experiment was conducted by using complete randomized design (CRD) with three replicates. The result indicated that germination percentage, Shoot length, leaf length, root length, number of leaves, and plant fresh weight were reduced by 37, 39, 39, 32 and 59% respectively at 0.75 mg kg-1 of CdSO4 concentration but when maize seeds inoculated with Bacillus pumilus significantly increased the germination percentage, shoot length, leaf length, number of leaves, plant fresh weight at different concentrations of CdSO4 . Moreover, the plant protein were significantly increased by 60% in T6 (0.25 mg kg-1 of CdSO4 + inoculated seed) and Peroxidase dismutase (POD) was also significantly higher by 346% in T6 (0.25 mg kg-1 of CdSO4 + inoculated seed), however, the Superoxide dismutase (SOD) was significantly higher in T5 (0.75 mg kg-1 of CdSO4 + uninoculated seed) and was 769% higher as compared to control. The Cd contents in Bacillus pumilus inoculated maize roots and shoots were decreased. The present investigations indicated that the inoculation of maize plant with Bacillus pumilus can help maize plants to withstand Cd stress but higher concentration of Cd can harm the plant. The Bacillus pumilus has good potential to remediate Cd from soil, and also have potential to reduce the phyto availability and toxicity of Cd., (© 2021. The Author(s).)- Published
- 2021
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25. Effects of salicylic acid, zinc and glycine betaine on morpho-physiological growth and yield of maize under drought stress.
- Author
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Shemi R, Wang R, Gheith EMS, Hussain HA, Hussain S, Irfan M, Cholidah L, Zhang K, Zhang S, and Wang L
- Abstract
Drought is one of the major environmental stresses that negatively affect the maize (Zea mays L.) growth and production throughout the world. Foliar applications of plant growth regulators, micronutrients or osmoprotectants for stimulating drought-tolerance in plants have been intensively reported. A controlled pot experiment was conducted to study the relative efficacy of salicylic acid (SA), zinc (Zn), and glycine betaine (GB) foliar applications on morphology, chlorophyll contents, relative water content (RWC), gas-exchange attributes, activities of antioxidant enzymes, accumulations of reactive oxygen species (ROS) and osmolytes, and yield attributes of maize plants exposed to two soil water conditions (85% field capacity: well-watered, 50% field capacity: drought stress) during critical growth stages. Drought stress significantly reduced the morphological parameters, yield and its components, RWC, chlorophyll contents, and gas-exchange parameters except for intercellular CO
2 concentration, compared with well water conditions. However, the foliar applications considerably enhanced all the above parameters under drought. Drought stress significantly (p < 0.05) increased the hydrogen peroxide and superoxide anion contents, and enhanced the lipid peroxidation rate measured in terms of malonaldehyde (MDA) content. However, ROS and MDA contents were substantially decreased by foliar applications under drought stress. Antioxidant enzymes activity, proline content, and the soluble sugar were increased by foliar treatments under both well-watered and drought-stressed conditions. Overall, the application of GB was the most effective among all compounds to enhance the drought tolerance in maize through reduced levels of ROS, increased activities of antioxidant enzymes and higher accumulation of osmolytes contents.- Published
- 2021
- Full Text
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26. Phosphorus (P) use efficiency in rice is linked to tissue-specific biomass and P allocation patterns.
- Author
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Irfan M, Aziz T, Maqsood MA, Bilal HM, Siddique KHM, and Xu M
- Subjects
- Biological Transport, Organ Specificity, Oryza metabolism, Plant Leaves metabolism, Plant Roots metabolism, Biomass, Oryza growth & development, Phosphorus metabolism, Plant Leaves growth & development, Plant Roots growth & development, Soil chemistry
- Abstract
Phosphorus (P) is a non-renewable resource which may be depleted within next few decades; hence high P use efficiency is need of time. Plants have evolved an array of adaptive mechanisms to enhance external P acquisition and reprioritize internal utilization under P deficiency. Tissue specific biomass and P allocation patterns may affect the P use efficiency in plants. six rice cultivars were grown in solution culture for 20 days and then were divided into two groups to receive either adequate P or no P that were harvested at 30, 40 and 50 days. Plants were dissected into various tissues/organs. Two rice cultivars viz Super Basmati (P-inefficient) and PS-2 (P-efficient) were grown in soil with no or 50 mg P kg
-1 soil till maturity. Rice cultivars PS-2 and Basmati-2000 had higher P uptake, utilization efficiency and internal remobilization than other tested cultivars after P omission. Young leaves and roots were the major sinks while stems and mature leaves were the sources of P during P omission. In conclusion, biomass allocation and P accumulation among various tissues and P remobilization were major factors responsible for P efficiency.- Published
- 2020
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27. SNAP-25 isoforms differentially regulate synaptic transmission and long-term synaptic plasticity at central synapses.
- Author
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Irfan M, Gopaul KR, Miry O, Hökfelt T, Stanton PK, and Bark C
- Subjects
- Animals, Anxiety physiopathology, Avoidance Learning, Behavior, Animal, Female, Hippocampus metabolism, Locomotion, Long-Term Potentiation, Mice, Inbred C57BL, Protein Isoforms metabolism, Synaptic Transmission, Time Factors, Neuronal Plasticity physiology, Synapses physiology, Synaptosomal-Associated Protein 25 metabolism
- Abstract
SNAP-25 exists as two developmentally regulated alternatively spliced isoforms, SNAP-25a and SNAP-25b. We explored the function of SNAP-25a and SNAP-25b at Schaffer collateral-CA1 synapses in hippocampus using 4-week-old wild-type (WT) and SNAP-25b-deficient (MT) mice. Characterizing the protein expression of individual SNAP-25 isoforms revealed that WT females had higher levels of SNAP-25a than WT males, suggesting a sex-dependent delay of the alternative splicing switch from SNAP-25a to SNAP-25b. MT mice expressed normal levels of total SNAP-25, Syntaxin 1A and SNAP-47 in the hippocampus, but females expressed lower levels of VAMP2. Electrophysiological recordings in in vitro hippocampal slices revealed significantly reduced magnitude of LTP in MT mice. We also found reduction in paired-pulse facilitation after induction of LTP in WT males, but not in WT females, possibly related to the difference in SNAP-25a/SNAP-25b ratios, suggesting that the splicing switch may play a sex-specific role in LTP-associated increases in presynaptic release probability. Basal synaptic transmission measured in input-output relations revealed that the ability to discriminate between the intensity of presynaptic stimuli was affected in SNAP-25b-deficient mice. Learning in a behavioural paradigm of active-avoidance was impaired in MT mice, strengthening the conclusion that SNAP-25b is important for cognitive performance by altering activity-dependent synaptic plasticity.
- Published
- 2019
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28. On the tunneling time of ultracold atoms through a system of two mazer cavities.
- Author
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Badshah F, Ge GQ, Irfan M, Qamar S, and Qamar S
- Abstract
We study the resonant tunneling of ultraslow atoms through a system of high quality microwave cavities. We find that the phase tunneling time across the two coupled cavities exhibits more frequent resonances as compared to the single cavity interaction. The increased resonances are instrumental in the display of an alternate sub and superclassical character of the tunneling time along the momentum axis with increasing energies of the incident slow atoms. Here, the intercavity separation appears as an additional controlling parameter of the system that provides an efficient control of the superclassical behavior of the phase tunneling time. Further, we find that the phase time characteristics through two cavity system has the combined features of the tunneling through a double barrier and a double well arrangements.
- Published
- 2018
- Full Text
- View/download PDF
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