27 results on '"Benedikt, M."'
Search Results
2. Body composition impacts outcome of bronchoscopic lung volume reduction in patients with severe emphysema: a fully automated CT-based analysis
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Wienker, Johannes, Darwiche, Kaid, Rüsche, Nele, Büscher, Erik, Karpf-Wissel, Rüdiger, Winantea, Jane, Özkan, Filiz, Westhölter, Dirk, Taube, Christian, Kersting, David, Hautzel, Hubertus, Salhöfer, Luca, Hosch, René, Nensa, Felix, Forsting, Michael, Schaarschmidt, Benedikt M., Zensen, Sebastian, Theysohn, Jens, Umutlu, Lale, Haubold, Johannes, and Opitz, Marcel
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- 2024
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3. Elexacaftor/tezacaftor/ivacaftor influences body composition in adults with cystic fibrosis: a fully automated CT-based analysis
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Dirk Westhölter, Johannes Haubold, Matthias Welsner, Luca Salhöfer, Johannes Wienker, Sivagurunathan Sutharsan, Svenja Straßburg, Christian Taube, Lale Umutlu, Benedikt M. Schaarschmidt, Sven Koitka, Sebastian Zensen, Michael Forsting, Felix Nensa, René Hosch, and Marcel Opitz
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Medicine ,Science - Abstract
Abstract A poor nutritional status is associated with worse pulmonary function and survival in people with cystic fibrosis (pwCF). CF transmembrane conductance regulator modulators can improve pulmonary function and body weight, but more data is needed to evaluate its effects on body composition. In this retrospective study, a pre-trained deep-learning network was used to perform a fully automated body composition analysis on chest CTs from 66 adult pwCF before and after receiving elexacaftor/tezacaftor/ivacaftor (ETI) therapy. Muscle and adipose tissues were quantified and divided by bone volume to obtain body size-adjusted ratios. After receiving ETI therapy, marked increases were observed in all adipose tissue ratios among pwCF, including the total adipose tissue ratio (+ 46.21%, p
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- 2024
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4. Body composition impacts outcome of bronchoscopic lung volume reduction in patients with severe emphysema: a fully automated CT-based analysis
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Johannes Wienker, Kaid Darwiche, Nele Rüsche, Erik Büscher, Rüdiger Karpf-Wissel, Jane Winantea, Filiz Özkan, Dirk Westhölter, Christian Taube, David Kersting, Hubertus Hautzel, Luca Salhöfer, René Hosch, Felix Nensa, Michael Forsting, Benedikt M. Schaarschmidt, Sebastian Zensen, Jens Theysohn, Lale Umutlu, Johannes Haubold, and Marcel Opitz
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Chronic obstructive pulmonary disease ,Emphysema ,Bronchoscopic lung volume reduction ,Valves ,Body composition ,Computed tomography ,Medicine ,Science - Abstract
Abstract Chronic Obstructive Pulmonary Disease (COPD) is characterized by progressive and irreversible airflow limitation, with individual body composition influencing disease severity. Severe emphysema worsens symptoms through hyperinflation, which can be relieved by bronchoscopic lung volume reduction (BLVR). To investigate how body composition, assessed through CT scans, impacts outcomes in emphysema patients undergoing BLVR. Fully automated CT-based body composition analysis (BCA) was performed in patients with end-stage emphysema receiving BLVR with valves. Post-interventional muscle and adipose tissues were quantified, body size-adjusted, and compared to baseline parameters. Between January 2015 and December 2022, 300 patients with severe emphysema underwent endobronchial valve treatment. Significant improvements were seen in outcome parameters, which were defined as changes in pulmonary function, physical performance, and quality of life (QoL) post-treatment. Muscle volume remained stable (1.632 vs. 1.635 for muscle bone adjusted ratio (BAR) at baseline and after 6 months respectively), while bone adjusted adipose tissue volumes, especially total and pericardial adipose tissue, showed significant increase (2.86 vs. 3.00 and 0.16 vs. 0.17, respectively). Moderate to strong correlations between bone adjusted muscle volume and weaker correlations between adipose tissue volumes and outcome parameters (pulmonary function, QoL and physical performance) were observed. Particularly after 6-month, bone adjusted muscle volume changes positively corresponded to improved outcomes (ΔForced expiratory volume in 1 s [FEV1], r = 0.440; ΔInspiratory vital capacity [IVC], r = 0.397; Δ6Minute walking distance [6MWD], r = 0.509 and ΔCOPD assessment test [CAT], r = −0.324; all p 10, respectively). BCA results among patients divided by the minimal clinically important difference for forced expiratory volume of the first second (FEV1) showed significant differences in bone-adjusted muscle and intramuscular adipose tissue (IMAT) volumes and their respective changes after 6 months (ΔMuscle, BAR% −5 vs. 3.4 and ΔIMAT, BAR% −0.62 vs. 0.60 for groups with ΔFEV1 ≤ 100 mL vs > 100 mL). Altered body composition, especially increased muscle volume, is associated with functional improvements in BLVR-treated patients.
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- 2024
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5. Automated imaging-based abdominal organ segmentation and quality control in 20,000 participants of the UK Biobank and German National Cohort Studies
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Turkay Kart, Marc Fischer, Stefan Winzeck, Ben Glocker, Wenjia Bai, Robin Bülow, Carina Emmel, Lena Friedrich, Hans-Ulrich Kauczor, Thomas Keil, Thomas Kröncke, Philipp Mayer, Thoralf Niendorf, Annette Peters, Tobias Pischon, Benedikt M. Schaarschmidt, Börge Schmidt, Matthias B. Schulze, Lale Umutle, Henry Völzke, Thomas Küstner, Fabian Bamberg, Bernhard Schölkopf, Daniel Rueckert, and Sergios Gatidis
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Medicine ,Science - Abstract
Abstract Large epidemiological studies such as the UK Biobank (UKBB) or German National Cohort (NAKO) provide unprecedented health-related data of the general population aiming to better understand determinants of health and disease. As part of these studies, Magnetic Resonance Imaging (MRI) is performed in a subset of participants allowing for phenotypical and functional characterization of different organ systems. Due to the large amount of imaging data, automated image analysis is required, which can be performed using deep learning methods, e. g. for automated organ segmentation. In this paper we describe a computational pipeline for automated segmentation of abdominal organs on MRI data from 20,000 participants of UKBB and NAKO and provide results of the quality control process. We found that approx. 90% of data sets showed no relevant segmentation errors while relevant errors occurred in a varying proportion of data sets depending on the organ of interest. Image-derived features based on automated organ segmentations showed relevant deviations of varying degree in the presence of segmentation errors. These results show that large-scale, deep learning-based abdominal organ segmentation on MRI data is feasible with overall high accuracy, but visual quality control remains an important step ensuring the validity of down-stream analyses in large epidemiological imaging studies.
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- 2022
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6. Automated imaging-based abdominal organ segmentation and quality control in 20,000 participants of the UK Biobank and German National Cohort Studies
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Kart, Turkay, Fischer, Marc, Winzeck, Stefan, Glocker, Ben, Bai, Wenjia, Bülow, Robin, Emmel, Carina, Friedrich, Lena, Kauczor, Hans-Ulrich, Keil, Thomas, Kröncke, Thomas, Mayer, Philipp, Niendorf, Thoralf, Peters, Annette, Pischon, Tobias, Schaarschmidt, Benedikt M., Schmidt, Börge, Schulze, Matthias B., Umutle, Lale, Völzke, Henry, Küstner, Thomas, Bamberg, Fabian, Schölkopf, Bernhard, Rueckert, Daniel, and Gatidis, Sergios
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- 2022
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7. Fixel based analysis of white matter alterations in early stage cerebral small vessel disease
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Petersen, Marvin, Frey, Benedikt M., Mayer, Carola, Kühn, Simone, Gallinat, Jürgen, Hanning, Uta, Fiehler, Jens, Borof, Katrin, Jagodzinski, Annika, Gerloff, Christian, Thomalla, Götz, and Cheng, Bastian
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- 2022
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8. Fixel based analysis of white matter alterations in early stage cerebral small vessel disease
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Marvin Petersen, Benedikt M. Frey, Carola Mayer, Simone Kühn, Jürgen Gallinat, Uta Hanning, Jens Fiehler, Katrin Borof, Annika Jagodzinski, Christian Gerloff, Götz Thomalla, and Bastian Cheng
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Medicine ,Science - Abstract
Abstract Cerebral small vessel disease (CSVD) is a common cause of morbidity and cognitive decline in the elderly population. However, characterizing the disease pathophysiology and its association with potential clinical sequelae in early stages is less well explored. We applied fixel-based analysis (FBA), a novel framework of investigating microstructural white matter integrity by diffusion-weighted imaging, to data of 921 participants of the Hamburg City Health Study, comprising middle-aged individuals with increased cerebrovascular risk in early stages of CSVD. In individuals in the highest quartile of white matter hyperintensity loads (n = 232, median age 63 years; IQR 15.3 years), FBA detected significantly reduced axonal density and increased atrophy of transcallosal fiber tracts, the bilateral superior longitudinal fasciculus, and corticospinal tracts compared to participants in the lowest quartile of white matter hyperintensities (n = 228, mean age 55 years; IQR 10 years). Analysis of all participants (N = 921) demonstrated a significant association between reduced fiber density and worse executive functions operationalized by the Trail Making Test. Findings were confirmed by complementary analysis of diffusion tensor metrics.
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- 2022
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9. Cytoskeletal disorganization underlies PABPN1-mediated myogenic disability
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Cyriel Sebastiaan Olie, Erik van der Wal, Domagoj Cikes, Loes Maton, Jessica C. de Greef, I.-Hsuan Lin, Yi-Fan Chen, Elsayad Kareem, Josef M. Penninger, Benedikt M. Kessler, and Vered Raz
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Medicine ,Science - Abstract
Abstract Muscle wasting and atrophy are regulated by multiple molecular processes, including mRNA processing. Reduced levels of the polyadenylation binding protein nucleus 1 (PABPN1), a multifactorial regulator of mRNA processing, cause muscle atrophy. A proteomic study in muscles with reduced PABPN1 levels suggested dysregulation of sarcomeric and cytoskeletal proteins. Here we investigated the hypothesis that reduced PABPN1 levels lead to an aberrant organization of the cytoskeleton. MURC, a plasma membrane-associated protein, was found to be more abundant in muscles with reduced PABPN1 levels, and it was found to be expressed at regions showing regeneration. A polarized cytoskeletal organization is typical for muscle cells, but muscle cells with reduced PABPN1 levels (named as shPAB) were characterized by a disorganized cytoskeleton that lacked polarization. Moreover, cell mechanical features and myogenic differentiation were significantly reduced in shPAB cells. Importantly, restoring cytoskeletal stability, by actin overexpression, was beneficial for myogenesis, expression of sarcomeric proteins and proper localization of MURC in shPAB cell cultures and in shPAB muscle bundle. We suggest that poor cytoskeletal mechanical features are caused by altered expression levels of cytoskeletal proteins and contribute to muscle wasting and atrophy.
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- 2020
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10. Author Correction: Cytoskeletal disorganization underlies PABPN1-mediated myogenic disability
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Olie, Cyriel Sebastiaan, van der Wal, Erik, Cikes, Domagoj, Maton, Loes, de Greef, Jessica C., Lin, I.-Hsuan, Chen, Yi-Fan, Kareem, Elsayad, Penninger, Josef M., Kessler, Benedikt M., and Raz, Vered
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- 2021
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11. Cytoskeletal disorganization underlies PABPN1-mediated myogenic disability
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Olie, Cyriel Sebastiaan, van der Wal, Erik, Cikes, Domagoj, Maton, Loes, de Greef, Jessica C., Lin, I.-Hsuan, Chen, Yi-Fan, Kareem, Elsayad, Penninger, Josef M., Kessler, Benedikt M., and Raz, Vered
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- 2020
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12. Network Localisation of White Matter Damage in Cerebral Small Vessel Disease
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Petersen, Marvin, Frey, Benedikt M., Schlemm, Eckhard, Mayer, Carola, Hanning, Uta, Engelke, Kristin, Fiehler, Jens, Borof, Katrin, Jagodzinski, Annika, Gerloff, Christian, Thomalla, Götz, and Cheng, Bastian
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- 2020
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13. Author Correction: Amine oxidase 3 is a novel pro-inflammatory marker of oxidative stress in peritoneal endometriosis lesions
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Thézénas, Marie-Laëtitia, De Leo, Bianca, Laux-Biehlmann, Alexis, Bafligil, Cemsel, Elger, Bernd, Tapmeier, Thomas, Morten, Karl, Rahmioglu, Nilufer, Dakin, Stephanie G., Charles, Philip, Martinez, Fernando Estrada, Steers, Graham, Fischer, Oliver M., Mueller, Joerg, Hess-Stumpp, Holger, Steinmeyer, Andreas, Manek, Sanjiv, Zondervan, Krina T., Kennedy, Stephen, Becker, Christian M., Shang, Catherine, Zollner, Thomas M., Kessler, Benedikt M., and Oppermann, Udo
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- 2020
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14. Amine oxidase 3 is a novel pro-inflammatory marker of oxidative stress in peritoneal endometriosis lesions
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Thézénas, Marie-Laëtitia, De Leo, Bianca, Laux-Biehlmann, Alexis, Bafligil, Cemsel, Elger, Bernd, Tapmeier, Thomas, Morten, Karl, Rahmioglu, Nilufer, Dakin, Stephanie G., Charles, Philip, Martinez, Fernando Estrada, Steers, Graham, Fischer, Oliver M., Mueller, Joerg, Hess-Stumpp, Holger, Steinmeyer, Andreas, Manek, Sanjiv, Zondervan, Krina T., Kennedy, Stephen, Becker, Christian M., Shang, Catherine, Zollner, Thomas M., Kessler, Benedikt M., and Oppermann, Udo
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- 2020
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15. Author Correction: Cytoskeletal disorganization underlies PABPN1-mediated myogenic disability
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Cyriel Sebastiaan Olie, Erik van der Wal, Domagoj Cikes, Loes Maton, Jessica C. de Greef, I.-Hsuan Lin, Yi-Fan Chen, Elsayad Kareem, Josef M. Penninger, Benedikt M. Kessler, and Vered Raz
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Medicine ,Science - Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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- 2021
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16. The deubiquitylating enzyme UCHL3 regulates Ku80 retention at sites of DNA damage
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Nishi, Ryotaro, Wijnhoven, Paul W. G., Kimura, Yusuke, Matsui, Misaki, Konietzny, Rebecca, Wu, Qian, Nakamura, Keisuke, Blundell, Tom L., and Kessler, Benedikt M.
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- 2018
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17. Tetrahydrobiopterin modulates ubiquitin conjugation to UBC13/UBE2N and proteasome activity by S-nitrosation
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Bailey, Jade, Davis, Simon, Shaw, Andrew, Diotallevi, Marina, Fischer, Roman, Benson, Matthew A., Zhu, Hanneng, Brown, James, Bhattacharya, Shoumo, Kessler, Benedikt M., Channon, Keith M., and Crabtree, Mark J.
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- 2018
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18. Proteo-metabolomics reveals compensation between ischemic and non-injured contralateral kidneys after reperfusion
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Huang, Honglei, van Dullemen, Leon F. A., Akhtar, Mohammed Z., Faro, Maria-Letizia Lo, Yu, Zhanru, Valli, Alessandro, Dona, Anthony, Thézénas, Marie-Laëtitia, Charles, Philip D., Fischer, Roman, Kaisar, Maria, Leuvenink, Henri G. D., Ploeg, Rutger J., and Kessler, Benedikt M.
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- 2018
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19. Cytoskeletal disorganization underlies PABPN1-mediated myogenic disability
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Chen Y-F., Josef M. Penninger, Lin I-H., L Maton, Vered Raz, Cyriel S. Olie, C Domagoj, E.E. Van der Wal, J.C. de Greef, E Kareem, and Benedikt M. Kessler
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Multidisciplinary ,Chemistry ,Myogenesis ,Regeneration (biology) ,Science ,Cell ,medicine.disease ,Muscle atrophy ,Article ,Cell biology ,Atrophy ,medicine.anatomical_structure ,Mechanisms of disease ,medicine ,Myocyte ,Medicine ,medicine.symptom ,Cytoskeleton ,Actin - Abstract
Muscle wasting and atrophy are regulated by multiple molecular processes, including mRNA processing. Reduced levels of the polyadenylation binding protein nucleus 1 (PABPN1), a multifactorial regulator of mRNA processing, cause muscle atrophy. A proteomic study in muscles with reduced PABPN1 levels suggested dysregulation of sarcomeric and cytoskeletal proteins. Here we investigated the hypothesis that reduced PABPN1 levels lead to an aberrant organization of the cytoskeleton. MURC, a plasma membrane-associated protein, was found to be more abundant in muscles with reduced PABPN1 levels, and it was found to be expressed at regions showing regeneration. A polarized cytoskeletal organization is typical for muscle cells, but muscle cells with reduced PABPN1 levels (named as shPAB) were characterized by a disorganized cytoskeleton that lacked polarization. Moreover, cell mechanical features and myogenic differentiation were significantly reduced in shPAB cells. Importantly, restoring cytoskeletal stability, by actin overexpression, was beneficial for myogenesis, expression of sarcomeric proteins and proper localization of MURC in shPAB cell cultures and in shPAB muscle bundle. We suggest that poor cytoskeletal mechanical features are caused by altered expression levels of cytoskeletal proteins and contribute to muscle wasting and atrophy.
- Published
- 2020
20. Author Correction: Cytoskeletal disorganization underlies PABPN1-mediated myogenic disability
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Elsayad Kareem, Jessica C. de Greef, Loes Maton, Vered Raz, Cyriel S. Olie, Domagoj Cikes, Benedikt M. Kessler, Josef M. Penninger, Yi-Fan Chen, Erik van der Wal, and I. Hsuan Lin
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Multidisciplinary ,business.industry ,Science ,Published Erratum ,Muscle Development ,Poly(A)-Binding Protein I ,Actins ,Cell Line ,Muscular Atrophy ,Humans ,Medicine ,Author Correction ,Muscle, Skeletal ,business ,Cytoskeleton ,Neuroscience - Abstract
Muscle wasting and atrophy are regulated by multiple molecular processes, including mRNA processing. Reduced levels of the polyadenylation binding protein nucleus 1 (PABPN1), a multifactorial regulator of mRNA processing, cause muscle atrophy. A proteomic study in muscles with reduced PABPN1 levels suggested dysregulation of sarcomeric and cytoskeletal proteins. Here we investigated the hypothesis that reduced PABPN1 levels lead to an aberrant organization of the cytoskeleton. MURC, a plasma membrane-associated protein, was found to be more abundant in muscles with reduced PABPN1 levels, and it was found to be expressed at regions showing regeneration. A polarized cytoskeletal organization is typical for muscle cells, but muscle cells with reduced PABPN1 levels (named as shPAB) were characterized by a disorganized cytoskeleton that lacked polarization. Moreover, cell mechanical features and myogenic differentiation were significantly reduced in shPAB cells. Importantly, restoring cytoskeletal stability, by actin overexpression, was beneficial for myogenesis, expression of sarcomeric proteins and proper localization of MURC in shPAB cell cultures and in shPAB muscle bundle. We suggest that poor cytoskeletal mechanical features are caused by altered expression levels of cytoskeletal proteins and contribute to muscle wasting and atrophy.
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- 2021
- Full Text
- View/download PDF
21. Amine oxidase 3 is a novel pro-inflammatory marker of oxidative stress in peritoneal endometriosis lesions
- Author
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Udo Oppermann, B De Leo, G Steers, F E Martinez, Thomas T. Tapmeier, Thomas M. Zollner, Nilufer Rahmioglu, J Mueller, Benedikt M. Kessler, Andreas Steinmeyer, Krina T. Zondervan, Sanjiv Manek, B Elger, Holger Hess-Stumpp, Catherine Shang, Stephanie G. Dakin, Stephen Kennedy, Philip D. Charles, Oliver Fischer, Karl J. Morten, Cemsel Bafligil, Christian M. Becker, Thezenas M-L., and Alexis Laux-Biehlmann
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endometriosis ,0301 basic medicine ,AOC3 ,Endometriosis ,lcsh:Medicine ,Peritoneal Diseases ,medicine.disease_cause ,Mice ,0302 clinical medicine ,Myeloid Cells ,lcsh:Science ,chemistry.chemical_classification ,Analgesics ,Mice, Inbred BALB C ,Sulfonamides ,030219 obstetrics & reproductive medicine ,Multidisciplinary ,Manchester Cancer Research Centre ,Interleukin ,Chronic inflammation ,3. Good health ,Allyl Compounds ,medicine.anatomical_structure ,Methionine sulfoxide reductase ,Female ,Amine Oxidase (Copper-Containing) ,Inflammation Mediators ,Metabolic Networks and Pathways ,Amine oxidase ,Iron ,Heme ,Article ,03 medical and health sciences ,Peritoneal cavity ,Phagocytosis ,medicine ,Animals ,Humans ,Author Correction ,Aldehydes ,Reactive oxygen species ,business.industry ,Gene Expression Profiling ,ResearchInstitutes_Networks_Beacons/mcrc ,Interleukin-8 ,lcsh:R ,medicine.disease ,Disease Models, Animal ,Oxidative Stress ,030104 developmental biology ,chemistry ,Infertility ,Cancer research ,lcsh:Q ,Lipid Peroxidation ,business ,Cell Adhesion Molecules ,Biomarkers ,Oxidative stress - Abstract
Endometriosis is a common gynaecological disease of women in reproductive age, and is thought to arise from retrograde menstruation and implantation of endometrial tissue, mostly into the peritoneal cavity. The condition is characterized by a chronic, unresolved inflammatory process thereby contributing to pain as cardinal symptom in endometriosis. Elevated reactive oxygen species (ROS) and oxidative stress have been postulated as factors in endometriosis pathogenesis. We here set out for a systematic study to identify novel mechanisms and pathways relating to oxidative stress in ectopic peritoneal lesions. Using combined proteomic and transcriptomic approaches, we identified novel targets including upregulated pro-oxidative enzymes, such as amine oxidase 3/vascular adhesion protein 1 (AOC3/VAP1) as well as downregulated protective factors, in particular alkenal reductase PTGR1 and methionine sulfoxide reductase. Consistent with an altered ROS landscape, we observed hemoglobin / iron overload, ROS production and lipid peroxidation in ectopic lesions. ROS-derived 4-hydroxy-2-nonenal induced interleukin IL-8 release from monocytes. Notably, AOC3 inhibitors provoked analgesic effects in inflammatory pain models in vivo, suggesting potential translational applicability.
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- 2020
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22. Spontaneous body contractions are modulated by the microbiome of Hydra
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Alexander Klimovich, Andrea P. Murillo-Rincon, Thomas C. G. Bosch, René Augustin, Eileen Pemöller, Benedikt M Mortzfeld, and Jan Taubenheim
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0301 basic medicine ,Hydra ,Motility ,lcsh:Medicine ,Gut flora ,Article ,03 medical and health sciences ,medicine ,Animals ,Germ-Free Life ,Microbiome ,Symbiosis ,lcsh:Science ,Peristalsis ,Gastrointestinal tract ,Multidisciplinary ,biology ,Behavior, Animal ,lcsh:R ,medicine.disease ,biology.organism_classification ,Cell biology ,Gastrointestinal Microbiome ,030104 developmental biology ,Lernaean Hydra ,lcsh:Q ,Dysbiosis ,Symbiotic bacteria - Abstract
Spontaneous contractile activity, such as gut peristalsis, is ubiquitous in animals and is driven by pacemaker cells. In humans, disruption of the contraction pattern leads to gastrointestinal conditions, which are also associated with gut microbiota dysbiosis. Spontaneous contractile activity is also present in animals lacking gastrointestinal tract. Here we show that spontaneous body contractions in Hydra are modulated by symbiotic bacteria. Germ-free animals display strongly reduced and less regular contraction frequencies. These effects are partially restored by reconstituting the natural microbiota. Moreover, soluble molecule(s) produced by symbiotic bacteria may be involved in contraction frequency modulation. As the absence of bacteria does not impair the contractile ability itself, a microbial effect on the pacemakers seems plausible. Our findings indicate that the influence of bacteria on spontaneous contractile activity is present in the early-branching cnidarian hydra as well as in Bilateria, and thus suggest an evolutionary ancient origin of interaction between bacteria and metazoans, opening a window into investigating the roots of human motility disorders.
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- 2017
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23. Author Correction: Amine oxidase 3 is a novel pro-inflammatory marker of oxidative stress in peritoneal endometriosis lesions
- Author
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Oliver Fischer, Nilufer Rahmioglu, B Elger, B De Leo, Stephen Kennedy, Thomas M. Zollner, Christian M. Becker, Cemsel Bafligil, Benedikt M. Kessler, Udo Oppermann, Karl J. Morten, Thomas T. Tapmeier, Holger Hess-Stumpp, G Steers, J Mueller, Alexis Laux-Biehlmann, Sanjiv Manek, Philip D. Charles, F E Martinez, Catherine Shang, Stephanie G. Dakin, Thezenas M-L., Krina T. Zondervan, and Andreas Steinmeyer
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0303 health sciences ,Amine oxidase ,Multidisciplinary ,business.industry ,lcsh:R ,Endometriosis ,lcsh:Medicine ,medicine.disease_cause ,medicine.disease ,3. Good health ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Inflammatory marker ,Cancer research ,Medicine ,lcsh:Q ,business ,lcsh:Science ,Oxidative stress ,030304 developmental biology - Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
- Published
- 2020
- Full Text
- View/download PDF
24. Proteo-metabolomics reveals compensation between ischemic and non-injured contralateral kidneys after reperfusion
- Author
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Henri G. D. Leuvenink, Rutger J. Ploeg, M Kaisar, Maria-Letizia Lo Faro, Marie-Laëtitia Thézénas, M Akhtar, Benedikt M. Kessler, Alessandro Valli, Honglei Huang, Anthony C. Dona, Zhanru Yu, Philip D. Charles, Roman Fischer, Leon F. A. van Dullemen, and Groningen Institute for Organ Transplantation (GIOT)
- Subjects
Proteomics ,0301 basic medicine ,medicine.medical_specialty ,MITOCHONDRIAL DYSFUNCTION ,Proteome ,Ischemia ,INHIBITION ,lcsh:Medicine ,COAGULATION ,ALLOGRAFT ,METABOLISM ,Kidney ,ISCHEMIA/REPERFUSION INJURY ,Article ,MECHANISMS ,03 medical and health sciences ,RENAL ISCHEMIA ,Internal medicine ,medicine ,Animals ,Metabolomics ,lcsh:Science ,Multidisciplinary ,Renal ischemia ,business.industry ,urogenital system ,TRANSPLANTATION ,lcsh:R ,Fatty Acids ,Acute kidney injury ,Kidney metabolism ,medicine.disease ,Rats, Inbred F344 ,Mitochondria ,Rats ,Transplantation ,030104 developmental biology ,Endocrinology ,medicine.anatomical_structure ,Reperfusion Injury ,lcsh:Q ,Kidney Diseases ,COMPLEMENT-SYSTEM ,business ,Glycolysis ,Reperfusion injury ,Signal Transduction ,Kidney disease - Abstract
Ischaemia and reperfusion injury (IRI) is the leading cause of acute kidney injury (AKI), which contributes to high morbidity and mortality rates in a wide range of injuries as well as the development of chronic kidney disease. The cellular and molecular responses of the kidney to IRI are complex and not fully understood. Here, we used an integrated proteomic and metabolomic approach to investigate the effects of IRI on protein abundance and metabolite levels. Rat kidneys were subjected to 45 min of warm ischaemia followed by 4 h and 24 h reperfusion, with contralateral and separate healthy kidneys serving as controls. Kidney tissue proteomics after IRI revealed elevated proteins belonging to the acute phase response, coagulation and complement pathways, and fatty acid (FA) signalling. Metabolic changes were already evident after 4 h reperfusion and showed increased level of glycolysis, lipids and FAs, whilst mitochondrial function and ATP production was impaired after 24 h. This deficit was partially compensated for by the contralateral kidney. Such a metabolic balance counteracts for the developing energy deficit due to reduced mitochondrial function in the injured kidney.
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- 2018
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25. miR-193a-3p interaction with HMGB1 downregulates human endothelial cell proliferation and migration
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Rebecca Konietzny, Suzanne M. Watt, Cheen P. Khoo, Maria G. Roubelakis, Grigorios Tsaknakis, Jack B. Schrader, Adrian L. Harris, and Benedikt M. Kessler
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0301 basic medicine ,Cord ,Angiogenesis ,Down-Regulation ,Biology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Cell Movement ,microRNA ,medicine ,Gene silencing ,Humans ,HMGB1 Protein ,Cell Proliferation ,Endothelial Progenitor Cells ,Multidisciplinary ,Cell growth ,Endothelial Cells ,Hypoxia (medical) ,Cell biology ,Endothelial stem cell ,MicroRNAs ,030104 developmental biology ,030220 oncology & carcinogenesis ,Cord blood ,medicine.symptom - Abstract
Circulating endothelial colony forming cells (ECFCs) contribute to vascular repair where they are a target for therapy. Since ECFC proliferative potential is increased in cord versus peripheral blood and to define regulatory factors controlling this proliferation, we compared the miRNA profiles of cord blood and peripheral blood ECFC-derived cells. Of the top 25 differentially regulated miRNAs selected, 22 were more highly expressed in peripheral blood ECFC-derived cells. After validating candidate miRNAs by q-RT-PCR, we selected miR-193a-3p for further investigation. The miR-193a-3p mimic reduced cord blood ECFC-derived cell proliferation, migration and vascular tubule formation, while the miR-193a-3p inhibitor significantly enhanced these parameters in peripheral blood ECFC-derived cells. Using in silico miRNA target database analyses combined with proteome arrays and luciferase reporter assays of miR-193a-3p mimic treated cord blood ECFC-derived cells, we identified 2 novel miR-193a-3p targets, the high mobility group box-1 (HMGB1) and the hypoxia upregulated-1 (HYOU1) gene products. HMGB1 silencing in cord blood ECFC-derived cells confirmed its role in regulating vascular function. Thus, we show, for the first time, that miR-193a-3p negatively regulates human ECFC vasculo/angiogenesis and propose that antagonising miR-193a-3p in less proliferative and less angiogenic ECFC-derived cells will enhance their vasculo/angiogenic function.
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- 2017
26. Integrative Phosphoproteomics Links IL-23R Signaling with Metabolic Adaptation in Lymphocytes
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Lochmatter, Corinne, primary, Fischer, Roman, additional, Charles, Philip D., additional, Yu, Zhanru, additional, Powrie, Fiona, additional, and Kessler, Benedikt M., additional
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- 2016
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27. Impact of baseline ECG characteristics on changes in cardiac biomarkers and echocardiographic metrices after acute myocardial infarction treated with Empagliflozin.
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Benedikt M, Aziz F, Fröschl T, Strohhofer C, Kolesnik E, Tripolt N, Pferschy P, Wallner M, Bugger H, Zirlik A, Scherr D, Sourij H, and von Lewinski D
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- Humans, Male, Middle Aged, Female, Aged, Double-Blind Method, Natriuretic Peptide, Brain blood, Sodium-Glucose Transporter 2 Inhibitors therapeutic use, Peptide Fragments blood, Benzhydryl Compounds therapeutic use, Glucosides therapeutic use, Electrocardiography, Biomarkers blood, Myocardial Infarction drug therapy, Myocardial Infarction diagnostic imaging, Myocardial Infarction physiopathology, Echocardiography
- Abstract
The EMMY trial was a multicentre, investigator-initiated, placebo-controlled, double-blind trial, which enrolled 476 patients immediately following AMI and the first study demonstrating a significant reduction in NT-proBNP-levels as well as significant improvements in cardiac structure and function in patients after acute myocardial infarction treated with empagliflozin vs. placebo. However, hardly any data are available investigating the prognostic role of baseline electrocardiogram metrics in SGLT2-inhibitor-treated patients. This post-hoc analysis investigated the association of baseline ECG metrics collected in one centre of the trial (181 patients) with changes in structural and functional cardiac parameters as well as cardiac biomarkers in response to Empagliflozin treatment. A total of 181 patients (146 men; mean age 58 ± 14 years) were included. Median PQ-interval was 156 (IQR 144-174) milliseconds (ms), QRS width 92 (84-98) ms, QTc interval 453 (428-478) ms, Q-wave duration 45 (40-60) ms, Q-wave amplitude 0.40 (0.30-0.70) millivolt (mV), and heart rate was 71 (64-85) bpm. For functional cardiac parameters (LVEF and E/e') of the entire cohort, a greater decrease of E/e' from baseline to week 26 was observed in shorter QRS width (P = 0.005).Structural cardiac endpoints were only found to have a significant positive correlation between LVEDD and Q wave duration (P = 0.037). Higher heart rate was significantly correlated with better response in LVEF (P = 0.001), E/e' (P = 0.021), and NT-proBNP (P = 0.005). Empagliflozin-treatment showed no interaction with the results. Baseline ECG characteristics post AMI are neither predictive for beneficial NTproBNP effects of Empagliflozin post AMI, nor for functional or structural changes within 26 weeks post AMI., (© 2024. The Author(s).)
- Published
- 2024
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