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Net ecosystem productivity (NEP), the difference between gross primary productivity (GPP) and ecosystem respiration (ER), is the basis of forest carbon sinks. Revealing NEP differences between naturally regenerating forests (NF) and planted forests (PF) can benefit for making carbon neutrality strategies. Based on 35 eddy covariance measurements in China, we analyzed NEP differences in values and spatial patterns between NF and PF. The results showed that NF had slightly lower NEP than PF, resulting from the high stand age (SA) and soil fertilizer, while their differences were not significant (p > 0.05). The increasing latitude decreased mean annual air temperature thus decreased GPP both in NF and PF. However, the higher SA and soil fertilizer in NF made most GPP release as ER thus induced no significant NEP spatial variation, while lower SA and soil fertilizer in PF made NEP spatially couple with GPP thus showed a decreasing latitudinal pattern. Therefore, stand characteristics determined the differences in NEP values but indirectly affected the differences in NEP spatial variations through altering GPP allocation. The decreasing latitudinal pattern of NEP in PF indicates a higher sequestration capacity in the PF of South China. Our results provide a basis for improving the forest carbon sequestration. [ABSTRACT FROM AUTHOR]