1. Community diversity and potential functions of rhizosphere-associated bacteria of nickel hyperaccumulators found in Albania
- Author
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Séverine Lopez, Guillaume Echevarria, Jean Louis Morel, Xavier Goux, Magdalena Calusinska, Emile Benizri, Laboratoire Sols et Environnement (LSE), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), Luxembourg Institute of Science and Technology (LIST), ANR-10-LABX-21, ANR-14-CE04-0005, and Luxembourg National Research Fund (FNR CORE OPTILYS C14/SR/8286517)
- Subjects
Flora ,bactérie rhizosphérique ,010504 meteorology & atmospheric sciences ,Rhizosphere bacterial communities ,microbiome ,010501 environmental sciences ,01 natural sciences ,Soil ,Nickel ,diversité microbienne ,Soil Pollutants ,High throughput sequencing ,Tax4Fun ,albanie ,Waste Management and Disposal ,Soil Microbiology ,2. Zero hunger ,Rhizosphere ,diversité fonctionnelle ,biology ,Biodiversity ,respiratory system ,functional diversity ,Pollution ,humanities ,Biodegradation, Environmental ,Albania ,Proteobacteria ,capacité d'échange cationique ,rhizosphère ,phytoremédiation ,Environmental Monitoring ,inorganic chemicals ,Environmental Engineering ,ultramafique ,Actinobacteria ,rhizospheric bacteria ,Botany ,otorhinolaryngologic diseases ,Environmental Chemistry ,Hyperaccumulator ,Endemism ,0105 earth and related environmental sciences ,Agromining ,15. Life on land ,biology.organism_classification ,Phytoremediation ,Brassicaceae ,Nickel-hyperaccumulators ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,human activities ,proteobacteria ,plante hyperaccumulatrice de métaux ,Acidobacteria - Abstract
Ultramafic (i.e. serpentine) soils are widespread in the Balkans and particularly in Albania. They account for a large part of plant endemism in that region and host several hyperaccumulator species, which are characterized by leaf nickel concentrations frequently above 1%. This rich nickel hyperaccumulating flora could serve as candidate to be used in phytoextraction and agromining. Despite recent interest in metal hyperaccumulating plants and agromining, very few studies have investigated the bacterial diversity and the influence of environmental factors on microbial gene profiles in the rhizosphere of hyperaccumulator plants growing on ultramafic soils. Because rhizospheric bacteria could be crucial to the success of phytoremediation, we studied a total of 48 nickel-hyperaccumulating plants which were sampled from four species that are widespread in Albania: Noccaea ochroleuca, Odontarrhena smolikana, O. rigida and O. chalcidica. All samples were taken from the ultramafic regions of Librazhd and Pogradec in eastern Albania in October 2015. Our study shows that Proteobacteria, Actinobacteria and Acidobacteria dominated the soil bacterial communities. Of these three phyla, only Proteobacteria was relatively abundant. This study underlines the influence of soil Cation Exchange Capacity on the bacterial community's diversity and structure. Based on the predicted metagenomes, the genes belonging to amino acid, lipid and carbohydrate metabolisms were identified as major gene families. Our study sheds some light on our understanding of how bacterial communities are structured within and affect the rhizosphere of hyperaccumulator plants from ultramafic soils in Albania.
- Published
- 2019