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Abstract Rivers are important sites of both nitrogen removal and emission of nitrous oxide (N 2 O), a powerful greenhouse gas. Previous measurements have focused on nitrogen-rich temperate rivers, with cold, low-nitrogen river systems at high-altitude receiving less attention. Here, nitrogen removal rates were estimated by directly measuring dissolved N 2 and N 2 O of the Yellow River in its source region of the Tibetan Plateau, a frigid high-altitude environment. We measured the dissolved N 2 and N 2 O using N 2 :Ar ratio method and headspace equilibrium technique, respectively. Dissolved N 2 in the river water ranged from 337 to 513 μmol N 2 L−1, and dissolved N 2 O ranged from 10.4 to 15.4 nmol N 2 O L−1. Excess dissolved N 2 (△N 2) ranged from −8.6 to 10.5 μmol N 2 L−1, while excess dissolved N 2 O (△N 2 O) ranged from 2.1 to 8.3 nmol N 2 O L−1; they were relatively low compared with most other rivers in the world. However, N 2 removal fraction (△N 2 /DIN, average 21.6%) and EF 5r values (N 2 O − N/NO 3 − N, range 1.6 × 10−4–5.0 × 10−2) were comparable with many other rivers despite the high altitude for the Yellow River source region. Furthermore, the EF 5r values increased with altitude. Estimated fluxes of N 2 and N 2 O to the atmosphere from the river surface ranged from −67.5 to 93.5 mmol N m−2 d−1 and from 4.8 to 93.8 μmol N m−2 d−1, respectively, and the nitrogen removal from rivers was estimated to be 1.87 × 107 kg N yr−1 for the Yellow River source region. This is the first report of nitrogen removal for a frigid high-altitude river; the results suggest that N removal and N 2 O emission from cold high-altitude rivers should be considered in the global nitrogen budget. Graphical abstract Unlabelled Image Highlights • Excess dissolved N 2 and N 2 O in the Yellow River source region were lower than other rivers. • N 2 O emission factor increased with the elevation of the Yellow River in its source region. • N 2 removal fraction and N 2 O emission factor in this study were comparable with other rivers. • The nitrogen removal from the Yellow River source region was about 1.87 × 107 kg N yr−1. [ABSTRACT FROM AUTHOR]