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The South China Sea (SCS) is the largest semi-enclosed marginal sea in the western Pacific. The alternation of East Asian monsoon causes a significant seasonal pattern of chlorophyll, primary productivity, and export flux of sinking particles. However, the source and sink of dissolved organic carbon (DOC) pools with different bioavailability are less studied. Here we evaluated the seasonal production of DOC in labile, semi-labile and refractory forms using a coupled physical-biogeochemical model. This study aims to understand the dynamics and budgets of organic matters in the SCS. Model results show that the production of labile, semi-labile and refractory DOC is highly correlated with the net primary productivity (NPP) which is higher in winter and lower in summer, reflecting a dependence of DOC on the NPP. The seasonal variation in Pearl River discharge dominates the DOC production in the northern coastal region. In the northeast, the Kuroshio intrusion associated frontal system is attributed to cause high winter production. The DOC production in the southwest is controlled by both winter mixing and summer upwelling. The production of refractory DOC with the least bioavailability favors carbon sequestration. Its annual mean production is 1.8±0.5 mg C m−2 d−1, equivalent to 26% of the export flux of particulate organic carbon at 1000 m. [ABSTRACT FROM AUTHOR]