1. Induced sputum microbiome in smoker and non-smoker COPD subjects and its association with lung function in Indian subjects
- Author
-
Shreyas V. Kumbhare, Bill Brashier, Peter J. Barnes, Akshay H. Gaike, Louise E. Donnelly, Dhiraj P. Dhotre, Kanchan Pyasi, Sundeep Salvi, Yogesh Shauche, Amit R Agarwal, Baishakhi Ghosh, Vandana Vincent, and Jyoti Londhe
- Subjects
COPD ,Lung microbiome ,biology ,business.industry ,Firmicutes ,Induced sputum ,Phylum Proteobacteria ,medicine.disease ,biology.organism_classification ,respiratory tract diseases ,Hypervariable region ,Immunology ,medicine ,Microbiome ,business ,Lung function - Abstract
Culture independent techniques have allowed a better understanding of association between tobacco-smoke exposed COPD (TS-COPD) & lung microbiome, but there is limited knowledge about lung microbiome in non-smoker COPD (NS-COPD) subjects. We aimed to study lung microbiome in smoker & non-smoker COPD subjects and its association with lung function in rural Indian subjects. Induced sputum samples were obtained from 11 healthy-nonsmokers (H-Nonsmokers), 10 healthy-smokers (H-Smokers), 18 biomass-smoke exposed healthy (H-Biomass), 15 TS-COPD & 20 NS-COPD subjects. Samples were sequenced using V3 & V4 hypervariable region (Illumina MiSeq Platform) and taxanomic diversity information was obtained with QIIME pipeline, & R script package. Bacterial abundance was significantly higher in NS-COPD subjects compared to H-Nonsmokers, H-Biomass, & TS-COPD subjects (Fig.1A). Exposure to tobacco-smoke caused decrease in bacterial diversity (Fig.1B). Firmicutes, Bacteriodetes, Proteobacteria, Actinobcater & Fusobacter were the most prevalent phyla in our samples. Phylum Proteobacteria, which includes many pathogens showed higher abundance in COPD subjects (Fig.1C) & were negatively associated with lung function (Fig.1D). The impaired lung function observed in COPD is associated with in increased abundance of pathogenic microbiome & a decline in its diversity, which may have implications in COPD pathophysiology.
- Published
- 2017
- Full Text
- View/download PDF