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Forest biomass dynamics are important indicators of forest productivity and carbon sinks, which are useful for evaluating forest ecological benefits and management options. Rapid and accurate methods for monitoring forest biomass would serve this purpose well. This study aimed at measuring aboveground biomass (AGB) and stand growth from tree crown parameters derived using unmanned aerial vehicle–light detection and ranging (UAV–LiDAR). We focused on 17-year-old Chinese fir plantations in a subtropical area in China and monitored them using UAV–LiDAR from February 2019 to February 2020. Two effective crown height (ECH) detection methods based on drone discrete point clouds were evaluated using ground survey data. Based on the evaluation results, the voxel method based on point cloud segmentation (root-mean-squared error (RMSE) = 0.62 m, relative RMSE (rRMSE) = 4.26%) was better than the tree crown boundary pixel sum method based on canopy height segmentation (RMSE = 1.26 m, rRMSE = 8.63%). The effective crown area (ECA) of an individual tree extracted using ECH was strongly correlated with the annual biomass growth (coefficient of determination (R2) = 0.47). The estimation of annual growth of individual tree crowns based on annual tree height increase (ΔH) derived from LiDAR was statistically significant (R2 = 0.33, p < 0.01). After adding the crown projection area or ECA, the model accuracy R2 increased to 0.57 or 0.63, respectively. As the scale increased to the plot level, the direct model with ECA (RMSE = 1.59 Mg∙ha−1∙a−1, rRMSE = 15.02%) had a better performance than the indirect model using tree height and crown diameter (RMSE = 1.81 Mg∙ha−1∙a−1, rRMSE = 17.10%). The mean annual growth rate of AGB per middle-aged Chinese fir tree was determined to be 8.45 kg∙a−1 using ECA and ΔH, and the plot-level growth rate was 11.47 Mg∙ha−1∙a−1. We conclude that the rapid and accurate monitoring of the annual growth of Chinese fir can be achieved based on multitemporal UAV–LiDAR and effective crown information.

The locally adjusted cubic-spline capping (LACC) algorithm is well recognized for its effectiveness in the global time series reconstruction of vegetation biophysical and biochemical parameters. However, in its application, we often encounter issues, such as identifying positively biased outliers for vegetation biochemical parameters and reducing the influence of long consecutive gaps. In this study, we improved the LACC algorithm to address the above two issues by (1) incorporating a procedure to remove outliers and (2) integrating the spatial information of neighboring pixels for large data gap filling. To evaluate the performance of the new version of LACC (namely LACC2.0), leaf chlorophyll content (LCC) was taken as an example. A reference LCC curve was generated for each pixel of the global map as the true value for global evaluation, and a time series of LCC with real gaps in the original data for each pixel was created by adding Gaussian noises into observations for testing the effectiveness of time series reconstruction algorithms. Results showed that the percentage of pixels with an RMSE smaller than 5 μg/cm2 was improved from 81.2% in LACC to 96.4% in LACC2.0, demonstrating that LACC2.0 had the potential to provide a better reconstruction of global daily satellite-derived vegetation biochemical parameters. This finding highlights the significance of outlier removal and spatial-temporal fusion to enhance the accuracy and reliability of time series reconstruction.

Forest disturbance detection is of great significance for understanding forest dynamics. The Landsat-based detection of the Trends in Disturbance and Recovery (LandTrendr) algorithm is widely used for forest disturbance mapping. However, there are still two limitations in LandTrendr: first, it only used for summer-composited observations, which may delay the detection of forest disturbances that occurred in autumn and winter by one year, and second, it detected all disturbance types simultaneously using a single spectral index, which may reduce the mapping accuracy for certain forest disturbance types. Here, we modified LandTrendr (mLandTrendr) for forest disturbance mapping in China by using multi-season observations and multispectral indices. Validations using the randomly selected 1957 reference forest disturbance samples across China showed that the overall accuracy (F1 score) of forest disturbance detection in China was improved by 21% with these two modifications. The mLandTrendr can quickly and accurately detect forest disturbance and can be extended to national and global forest disturbance mapping for various forest types.

This paper proposes a systematic image mosaicking methodology to produce hyperspectral image for environment monitoring using an emerging UAV-based push-broom hyperspectral imager. The suitability of alternative methods in each step is assessed by experiments of an urban scape, a river course and a forest study area. First, the hyperspectral image strips were acquired by sequentially stitching the UAV images acquired by push-broom scanning along each flight line. Next, direct geo-referencing was applied to each image strip to get initial geo-rectified result. Then, with ground control points, the curved surface spline function was used to transform the initial geo-rectified image strips to improve their geometrical accuracy. To further remove the displacement between pairs of image strips, an improved phase correlation (IPC) and a SIFT and RANSAC-based method (SR) were used in image registration. Finally, the weighted average and the best stitching image fusion method were used to remove the spectral differences between image strips and get the seamless mosaic. Experiment results showed that as the GCPs‘ number increases, the mosaicked image‘s geometrical accuracy increases. In image registration, there exists obvious edge information that can be accurately extracted from the urban scape and river course area; comparative results can be achieved by the IPC method with less time cost. However, for the ground objects with complex texture like forest, the edges extracted from the image is prone to be inaccurate and result in the failure of the IPC method, and only the SR method can get a good result. In image fusion, the best stitching fusion method can get seamless results for all three study areas. Whereas, the weighted average fusion method was only useful in eliminating the stitching line for the river course and forest areas but failed for the urban scape area due to the spectral heterogeneity of different ground objects. For different environment monitoring applications, the proposed methodology provides a practical solution to seamlessly mosaic UAV-based push-broom hyperspectral images with high geometrical accuracy and spectral fidelity.

In terrestrial ecosystems, leaves are aggregated into different spatial structures and their spatial distribution is non-random. Clumping index (CI) is a key canopy structural parameter, characterizing the extent to which leaf deviates from the random distribution. To assess leaf clumping effects on global terrestrial ET, we used a global leaf area index (LAI) map and the latest version of global CI product derived from MODIS BRDF data as well as the Boreal Ecosystem Productivity Simulator (BEPS) to estimate global terrestrial ET. The results show that global terrestrial ET in 2015 was 511.9 ± 70.1 mm yr−1 for Case I, where the true LAI and CI are used. Compared to this baseline case, (1) global terrestrial ET is overestimated by 4.7% for Case II where true LAI is used ignoring clumping; (2) global terrestrial ET is underestimated by 13.0% for Case III where effective LAI is used ignoring clumping. Among all plant functional types (PFTs), evergreen needleleaf forests were most affected by foliage clumping for ET estimation in Case II, because they are most clumped with the lowest CI. Deciduous broadleaf forests are affected by leaf clumping most in Case III because they have both high LAI and low CI compared to other PFTs. The leaf clumping effects on ET estimation in both Case II and Case III is robust to the errors in major input parameters. Thus, it is necessary to consider clumping effects in the simulation of global terrestrial ET, which has considerable implications for global water cycle research.

We evaluate the potential of using a process-based ecosystem model (BEPS) for crop biomass mapping at 20 m resolution over the research site in Manitoba, western Canada driven by spatially explicit leaf area index (LAI) retrieved from Sentinel-2 spectral reflectance throughout the entire growing season. We find that overall, the BEPS-simulated crop gross primary production (GPP), net primary production (NPP), and LAI time-series can explain 82%, 83%, and 85%, respectively, of the variation in the above-ground biomass (AGB) for six selected annual crops, while an application of individual crop LAI explains only 50% of the variation in AGB. The linear relationships between the AGB and these three indicators (GPP, NPP and LAI time-series) are rather high for the six crops, while the slopes of the regression models vary for individual crop type, indicating the need for calibration of key photosynthetic parameters and carbon allocation coefficients. This study demonstrates that accumulated GPP and NPP derived from an ecosystem model, driven by Sentinel-2 LAI data and abiotic data, can be effectively used for crop AGB mapping; the temporal information from LAI is also effective in AGB mapping for some crop types.

Light use efficiency (LUE) models are widely used to estimate gross primary productivity (GPP), a dominant component of the terrestrial carbon cycle. Their outputs are very sensitive to LUE. Proper determination of this parameter is a prerequisite for LUE models to simulate GPP at regional and global scales. This study was devoted to investigating the ability of the photochemical reflectance index (PRI) to track LUE variations for a sub-tropical planted coniferous forest in southern China using tower-based PRI and GPP measurements over the period from day 101 to 275 in 2013. Both half-hourly PRI and LUE exhibited detectable diurnal and seasonal variations, and decreased with increases of vapor pressure deficit (VPD), air temperature (Ta), and photosynthetically active radiation (PAR). Generally, PRI is able to capture diurnal and seasonal changes in LUE. However, correlations of PRI with LUE varied dramatically throughout the growing season. The correlation was the strongest (R2 = 0.6427, p < 0.001) in July and the poorest in May. Over the entire growing season, PRI relates better to LUE under clear or partially cloudy skies (clearness index, CI > 0.3) with moderate to high VPD (>20 hPa) and high temperatures (>31 C). Overall, we found that PRI is most sensitive to variations in LUE under stressed conditions, and the sensitivity decreases as the growing conditions become favorable when atmosphere water vapor, temperature and soil moisture are near the optimum conditions.

Accurate measurement of leaf chlorophyll concentration (LChl) in the field using a portable chlorophyll meter (PCM) is crucial to support methodology development for mapping the spatiotemporal variability of crop nitrogen status using remote sensing. Several PCMs have been developed to measure LChl instantaneously and non-destructively in the field, however, their readings are relative quantities that need to be converted into actual LChl values using conversion functions. The aim of this study was to investigate the relationship between actual LChl and PCM readings obtained by three PCMs: SPAD-502, CCM-200, and Dualex-4. Field experiments were conducted in 2016 on four crops: corn (Zea mays L.), soybean (Glycine max L. Merr.), spring wheat (Triticum aestivum L.), and canola (Brassica napus L.), at the Central Experimental Farm of Agriculture and Agri-Food Canada in Ottawa, Ontario, Canada. To evaluate the impact of other factors (leaf internal structure, leaf pigments other than chlorophyll, and the heterogeneity of LChl distribution) on the conversion function, a global sensitivity analysis was conducted using the PROSPECT-D model to simulate PCM readings under different conditions. Results showed that Dualex-4 had a better performance for actual LChl measurement than SPAD-502 and CCM-200, using a general conversion function for all four crops tested. For SPAD-502 and CCM-200, the error in the readings increases with increasing LChl. The sensitivity analysis reveals that deviations from the calibration functions are more induced by non-uniform LChl distribution than leaf architectures. The readings of Dualex-4 can have a better ability to restrict these influences than those of the other two PCMs.

Over the past four decades, satellite observations have shown intensified global greening. At the same time, widespread browning and reversal of or stalled greening have been reported at high latitudes. One of the main reasons for this browning/lack of greening is thought to be warming-induced water stress, i.e., soil moisture depletion caused by earlier spring growth and increased summer evapotranspiration. To investigate these phenomena, we use MODIS collection 6, Global Inventory Modeling and Mapping Studies third-generation (GIMMS) normalized difference vegetation index (NDVI3g), and Global Land Evaporation Amsterdam Model (GLEAM) satellite-based root-zone soil moisture data. The study area was the Far North of Ontario (FNO), 453,788 km2 of heterogeneous landscape typical of the tundra-taiga interface, consisting of unmanaged boreal forests growing on mineral and peat soils, wetlands, and the most southerly area of tundra. The results indicate that the increased plant growth in spring leads to decreased summer growth. Lower summer soil moisture is related to increased spring plant growth in areas with lower soil moisture content. We also found that earlier start of growing season leads to decreased summer and peak season maximum plant growth. In conclusion, increased spring plant growth and earlier start of growing season deplete summer soil moisture and decrease the overall summer plant growth even in temperature-limited high latitude ecosystems. Our findings contribute to evolving understanding of changes in vegetation dynamics in relation to climate in northern high latitude terrestrial ecosystems.

Leaf chlorophyll content plays a vital role in plant photosynthesis. The PROSPECT model has been widely used for retrieving leaf chlorophyll content from remote sensing data over various plant species. However, despite wide variations in leaf surface reflectance across different plant species and environmental conditions, leaf surface reflectance is assumed to be the same for different leaves in the PROSPECT model. This work extends the PROSPECT model by taking into account the variation of leaf surface reflection. In the modified model named PROSPECT-Rsurf, an additional surface layer with a variable refractive index is bounded on the N elementary layers. Leaf surface reflectance (Rs) is characterized by the difference between the refractive indices of leaf surface and interior layers. The specific absorption coefficients of the leaf total chlorophyll and carotenoids were recalibrated using a cross-calibration method and the refractive indices of leaf surface and interior layers were obtained during model inversion. Chlorophyll content (Cab) retrieval and spectral reconstruction in the visible spectral region (VIS, 400−750 nm) were greatly improved using PROSPECT-Rsurf, especially for leaves covered by heavy wax or hard cuticles that lead to high surface reflectance. The root mean square error (RMSE) of chlorophyll estimates decreased from 11.1 µg/cm2 to 8.9 µg/cm2 and the Pearson’s correlation coefficient (r) increased from 0.81 to 0.88 (p < 0.01) for broadleaf samples in validation, compared to PROSPECT-5. For needle leaves, r increased from 0.71 to 0.89 (p < 0.01), but systematic overestimation of Cab was found due to the edge effects of needles. After incorporating the edge effects in PROSPECT-Rsurf, the overestimation of Cab was alleviated and its estimation was improved for needle leaves. This study explores the influence of leaf surface reflectance on Cab estimation at the leaf level. By coupling PROSPECT-Rsurf with canopy models, the influence of leaf surface reflectance on canopy reflectance and therefore canopy chlorophyll content retrieval can be investigated across different spatial and temporal scales.

Information on crop seeding date is required in many applications such as crop management and yield forecasting. This study presents a novel method to estimate crop seeding date at the field level from time-series 250-m Moderate Resolution Imaging Spectroradiometer (MODIS) data and growing degree days (GDD; base 5 ºC; ºC-days). The start of growing season (SOS) was first derived from time-series EVI2 (two-band Enhanced Vegetation Index) calculated from a MODIS 8-day composite surface reflectance product (MOD09Q1; Collection 6). Based on GDD calculated from the Daymet gridded estimates of daily weather parameters, a simple model was developed to establish a linkage between the observed seeding date and the SOS. Calibration and validation of the model was conducted on three major crops, spring wheat, canola and oats in the Province of Manitoba, Canada. The estimated SOS had a strong linear correlation with the observed seeding date; with a deviation of a few days depending on the year. The seeding date of the three crops can be calculated from the SOS by adjusting the number of days needed to accumulate GDD (AGDD) for emergence. The overall root-mean-square-difference (RMSD) of the estimated seeding date was less than 10 days. Validation showed that the accuracy of the estimated seeding date was crop-type independent. The developed method is useful for estimating the historical crop seeding date from remote sensing data in Canada to support studies of the interactions among seeding date, crop management and crop yield under climate change. It is anticipated that this method can be adapted to other crops in other locations using the same or different satellite data.

In this study, we evaluated the effectiveness of photochemical reflectance index (PRI) and non-photochemical quenching (NPQ) for assessing water stress in maize for the purpose of developing remote sensing techniques for monitoring water deficits in crops. Leaf-level chlorophyll fluorescence and canopy-level PRI were measured concurrently over a maize field with five different irrigation treatments, ranging from 20% to 90% of the field capacity (FC). Significant correlations were found between leaf-level NPQ (NPQleaf) and the ratio of chlorophyll to carotenoid content (Chl/Car) (R2 = 0.71, p < 0.01) and between NPQleaf and the actual photochemical efficiency of photosystem II (ΔF/Fm′) (R2 = 0.81, p < 0.005). At the early growing stage, both canopy-level PRI and NPQleaf are good indicators of water stress (R2 = 0.65 and p < 0.05; R2 = 0.63 and p < 0.05, respectively). For assessment of extreme water stress on plant growth, a relationship is also established between the quantum yield of photochemistry in PSII (ΦP) and the quantum yield of fluorescence (ΦF) as determined from photochemical quenching (PQ) and non-photochemical quenching (NPQleaf) of excitation energy at different water stress levels. These results would be helpful in monitoring soil water stress on crops at large scales using remote sensing techniques.

Nitrogen is an essential nutrient in many terrestrial ecosystems because it affects vegetation’s primary production. Due to the variety of nitrogen-containing substances and the differences in their composition across species, statistical approaches are now dominant in remote sensing retrieval of leaf nitrogen content. Many studies remove spectral regions characterized by strong water absorptions before retrieving nitrogen content, because water is believed to mask the absorption features of nitrogen. The objectives of this study are to discuss the necessity of this practice and to explore how water absorption affects leaf nitrogen estimation. Spectral measurements and chemical analyses for Maize, Sawtooth Oak, and Sweetgum leaves were carried out in 2014. The leaf optical properties model PROSPECT5 was used to eliminate the influences of water on the measured reflectance spectra. The inversion accuracy of PROPECT5 for chlorophyll, carotenoid, water, and dry matter of Maize was also discussed. Measured, simulated, and water-removed spectra were used to: (1) find the optimal nitrogen-related spectral index; and (2) regress with the area-based leaf nitrogen concentration (LNC) using the partial least square regression technique (PLSR). Two types of spectral indices were selected in this study: Normalized Difference Spectral Index (NDSI) and Ratio Spectral Index (RSI). Additionally, first-order derivative forms of measured, simulated, and water-removed spectra were devised to search for the optimal spectral indices. Finally, species-specific optimal indices and cross-species optimal indices, as well as their root mean square errors (RMSE) and coefficients of determination (R2), were obtained. The Ending Top Percentile (ETP), an indicator of the performance of cross-species optimal indices, was also calculated. PLSR was combined with leave-one-out cross validation (LOOCV) for each species. The predicted root mean square errors (RMSEP) and predicted R2 were finally calculated. The results showed that chlorophyll, carotenoid, and water contents could be estimated with R2 of 0.75, 0.59, and 0.69, respectively, which were acceptable for fresh leaves. The dry matter was retrieved with a relatively lower accuracy because of the fixed absorption coefficients adopted by PROSPECT5. The performances of species-specific optimal indices using water-free spectra were comparable to or worse than the corresponding indices derived with measured or simulated spectra. Compared with measured spectra, ETP did not change much after the effects of water were removed, and the R2 between cross-species optimal spectral indices and area-based LNC for Sawtooth Oak and Sweetgum decreased while it remained almost the same for Maize, suggesting that the water-removed cross-species optimal indices were inferior to the corresponding optimal indices found without water removal. ETP was larger than 30% for all spectra, demonstrating the non-existence of common optimal NDSI or RSI for the three species. After water removal, the accuracy of PLSR for Sawtooth Oak and Sweetgum decreased and increased negligibly for Maize. The results suggest that water absorption has limited effects on reducing the accuracy of leaf nitrogen estimation. On the contrary, the accuracy may decrease due to the loss of spectral information caused by the removal of water-sensitive spectral regions.