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With the current decreasing fossil resources and increasing carbon dioxide emissions, researchers are increasingly concerned about the development and utilization of biomass resources. The development of bio-based waterborne polyurethanes (BWPU) provides a new direction for the utilization of biomass resources and the protection of the environment. BWPU has attracted much attention from academia and industry due to their good physical and chemical properties, no volatile organic compounds (VOCs) emissions, exploitation of renewable substances, and structural design-ability. BWPU typically includes the polymerization of bio-based monomers, such as animal and vegetable oils, the addition of bio-based nanofillers, such as cellulose, lignin, and chitosan, and antimicrobial modifications, such silver nanoparticles and carvacrol, which can effectively replace traditional petroleum-based resources. At present, there are few reviews on the synthesis and applications of BWPU. Therefore, this paper reviews the recent progress in the synthesis of BWPU, and focuses on its applications in coatings, adhesives and antimicrobials, which is expected to provide reference and summarize research priorities and issues. [Display omitted] • Summarize bio-based waterborne polyurethanes (BWPU) recently produced from bio-based raw materials. • Summarize the current applications of BWPU, including coatings, adhesives and antimicrobials. • Suggestions are provided for further future research by BWPU in other areas. [ABSTRACT FROM AUTHOR]