1. Retrospective testing and case series study of porcine delta coronavirus in U.S. swine herds
- Author
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Yan Zhang, Albert Rovira, Sunny Barder, Brian J. McCluskey, Rodger Main, and Charles Haley
- Subjects
0301 basic medicine ,Diarrhea ,Veterinary medicine ,Swine ,Biosecurity ,medicine.disease_cause ,Article ,03 medical and health sciences ,Food Animals ,Risk Factors ,Rotavirus ,Case fatality rate ,Prevalence ,Medicine ,Animals ,Case series ,Coronavirus ,Retrospective Studies ,Swine Diseases ,business.industry ,Porcine epidemic diarrhea virus ,Outbreak ,Porcine deltacoronavirus ,United States ,030104 developmental biology ,Herd ,Animal Science and Zoology ,Morbidity ,business ,Coronavirus Infections ,Swine enteric coronaviruses - Abstract
Highlights • We conducted retrospective testing of clinical samples submitted to veterinary diagnostic laboratories for porcine deltacoronavirus. • Over 2000 samples were tested over three separate years with 3 positive samples detected prior to the PDCoV outbreak detection in February 2014. • We surveyed 42 early infected swine farms to determine various farm level characteristics, descriptive estimates of biosecurity practices and disease status over time of each operation. • Clinical signs of PDCoV were reported to be similar to those of PEDv. The average number of animals on each operation exhibiting clinical signs (morbidity) and the average number of case fatalities was greatest for suckling and weaned pigs. • The survey included questions regarding biosecurity practices for visitors and operation employees; trucks, equipment and drivers; and feed sources. These questions attempted to identify a likely pathway of introduction of PDCoV onto the operations surveyed., Porcine deltacoronavirus (PDCoV) was first reported in the United States (US) in February 2014. This was the second novel swine enteric coronavirus detected in the US since May 2013. In this study, we conducted retrospective testing of samples submitted to three veterinary diagnostic laboratories where qualifying biological samples were derived from previously submitted diagnostic case submissions from US commercial swine farms with a clinical history of enteric disease or from cases that had been previously tested for transmissible gastroenteritis virus, PEDV, or rotavirus. Overall, 2286 banked samples were tested from 27 States. Samples were collected in 3 separate years and in 17 different months. Test results revealed 4 positive samples, 3 collected in August 2013 and 1 collected in October 2013. In addition, a case series including 42 operations in 10 States was conducted through administration of a survey. Survey data collected included information on characteristics of swine operations that had experienced PDCoV clinical signs. Special emphasis was placed on obtaining descriptive estimates of biosecurity practices and disease status over time of each operation. Clinical signs of PDCoV were reported to be similar to those of PEDV. The average number of animals on each operation exhibiting clinical signs (morbidity) and the average number of case fatalities was greatest for suckling and weaned pigs. Average operation-level weaned pig morbidity was greatest in the first week of the outbreak while average operation-level suckling pig case fatality was greatest in the second week of the outbreak. The survey included questions regarding biosecurity practices for visitors and operation employees; trucks, equipment and drivers; and feed sources. These questions attempted to identify a likely pathway of introduction of PDCoV onto the operations surveyed.
- Published
- 2016
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