42 results on '"Wei, Chu"'
Search Results
2. Ethnic differences in the age-related distribution of serum prostate-specific antigen values: A study in a Taiwanese male population.
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Tsung-Hsun Tsai, Ta-Wei Chu, Tien-Huang Lin, Teng-Fu Hsieh, Chi-Cheng Chen, Hsin-Ho Liu, Yuan-Chieh Chuang, Chia-Wen Lin, and Shang-Sen Lee
- Subjects
Medicine ,Science - Abstract
This study investigates age-specific prostate-specific antigen (PSA) distributions in Taiwanese men and recommends reference ranges for this population after comparison with other studies. From January 1999 to December 2016, a total of 213,986 Taiwanese men aged above 19 years old without history of prostate cancer, urinary tract infection, or prostate infection were recruited from the Taiwan MJ cohort, an ongoing prospective cohort of health examinations conducted by the MJ Health Screening Center in Taiwan. Participants were divided into seven age groups. Simple descriptive statistical analyses were carried out and quartiles and 95th percentiles were calculated for each group as reference ranges for serum PSA in screening for prostate cancer in Taiwanese men. Serum PSA concentration correlated with age (r = 0.274, p
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- 2023
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3. Effect of a 90 g/day low-carbohydrate diet on glycaemic control, small, dense low-density lipoprotein and carotid intima-media thickness in type 2 diabetic patients: An 18-month randomised controlled trial.
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Chin-Ying Chen, Wei-Sheng Huang, Hui-Chuen Chen, Chin-Hao Chang, Long-Teng Lee, Heng-Shuen Chen, Yow-Der Kang, Wei-Chu Chie, Chyi-Feng Jan, Wei-Dean Wang, and Jaw-Shiun Tsai
- Subjects
Medicine ,Science - Abstract
AimThis study explored the effect of a moderate (90 g/d) low-carbohydrate diet (LCD) in type 2 diabetes patients over 18 months.MethodsNinety-two poorly controlled type 2 diabetes patients aged 20-80 years with HbA1c ≥7.5% (58 mmol/mol) in the previous three months were randomly assigned to a 90 g/d LCD r traditional diabetic diet (TDD). The primary outcomes were glycaemic control status and change in medication effect score (MES). The secondary outcomes were lipid profiles, small, dense low-density lipoprotein (sdLDL), serum creatinine, microalbuminuria and carotid intima-media thickness (IMT).ResultsA total of 85 (92.4%) patients completed 18 months of the trial. At the end of the study, the LCD and TDD group consumed 88.0±29.9 g and 151.1±29.8 g of carbohydrates, respectively (p < 0.05). The 18-month mean change from baseline was statistically significant for the HbA1c (-1.6±0.3 vs. -1.0±0.3%), 2-h glucose (-94.4±20.8 vs. -18.7±25.7 mg/dl), MES (-0.42±0.32 vs. -0.05±0.24), weight (-2.8±1.8 vs. -0.7±0.7 kg), waist circumference (-5.7±2.7 vs. -1.9±1.4 cm), hip circumference (-6.1±1.8 vs. -2.9±1.7 cm) and blood pressure (-8.3±4.6/-5.0±3 vs. 1.6±0.5/2.5±1.6 mmHg) between the LCD and TDD groups (pConclusionsA moderate (90 g/d) LCD showed better glycaemic control with decreasing MES, lowering blood pressure, decreasing weight, waist and hip circumference without adverse effects on lipid profiles, sdLDL, serum creatinine, microalbuminuria, ALT and carotid IMT than TDD for type 2 diabetic patients.
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- 2020
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4. Blood multiomics reveal insights into population clusters with low prevalence of diabetes, dyslipidemia and hypertension.
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Ming-Wei Su, Chung-Ke Chang, Chien-Wei Lin, Shiu-Jie Ling, Chia-Ni Hsiung, Hou-Wei Chu, Pei-Ei Wu, and Chen-Yang Shen
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Medicine ,Science - Abstract
Diabetes, dyslipidemia and hypertension are important metabolic diseases that impose a great burden on many populations worldwide. However, certain population strata have reduced prevalence for all three diseases, but the underlying mechanisms are poorly understood. We sought to identify the phenotypic, genomic and metabolomic characteristics of the low-prevalence population to gain insights into possible innate non-susceptibility against metabolic diseases. We performed k-means cluster analysis of 16,792 subjects using anthropometric and clinical biochemistry data collected by the Taiwan Biobank. Nuclear magnetic resonance spectra-based metabolome analysis was carried out for 217 subjects with normal body mass index, good exercise habits and healthy lifestyles. We found that the gene APOA5 was significantly associated with reduced prevalence of disease, and lesser associations included the genes HIF1A, LIMA1, LPL, MLXIPL, and TRPC4. Blood plasma of subjects belonging to the low disease prevalence cluster exhibited lowered levels of the GlycA inflammation marker, very low-density lipoprotein and low-density lipoprotein cholesterol, triglycerides, valine and leucine compared to controls. Literature mining revealed that these genes and metabolites are biochemically linked, with the linkage between lipoprotein metabolism and inflammation being particularly prominent. The combination of phenomic, genomic and metabolomic analysis may also be applied towards the study of metabolic disease prevalence in other populations.
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- 2020
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5. Drug-coated balloon versus conventional balloon angioplasty of hemodialysis arteriovenous fistula or graft: A systematic review and meta-analysis of randomized controlled trials.
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Min-Tsun Liao, Meng-Kan Chen, Mu-Yang Hsieh, Nai-Lun Yeh, Kuo-Liong Chien, Chih-Ching Lin, Chih-Cheng Wu, and Wei-Chu Chie
- Subjects
Medicine ,Science - Abstract
BACKGROUND:Restenosis remains a significant problem in endovascular therapy for hemodialysis vascular access. Drug-coated balloon (DCB) angioplasty decreases restenosis in peripheral and coronary artery diseases. The aim of this systematic review and meta-analysis is to assess the patency outcomes following DCB angioplasty, as compared to conventional balloon (CB) angioplasty for the stenosis of hemodialysis vascular access. METHODS:A comprehensive search in the MEDLINE, EMBASE, and CENTRAL databases was conducted in order to identify eligible randomized controlled trials evaluating DCB angioplasty for hemodialysis vascular access dysfunction. The primary endpoint was the 6-month target lesion primary patency and the secondary endpoints were 12-month target lesion primary patency and procedure-related complications. Risk ratios (RR) were pooled and relevant subgroups were analyzed separately. RESULTS:Eleven randomized controlled trials comprised of 487 patients treated with DCB angioplasty and 489 patients treated with CB angioplasty were included. There were no significant differences in the target lesion primary patency at 6 months [RR, 0.75; 95% confidence interval (CI), 0.56, 1.01; p = 0.06] and at 12 months (RR 0.89; 95% CI, 0.79, 1.00; p = 0.06). The absence of benefit for the DCB group remained, even in the arteriovenous fistula subgroup or the subgroup of studies excluding central vein stenosis. The risk of procedure-related complication did not differ between the two groups (RR 1.00; 95% CI 0.98, 1.02; p = 0.95). CONCLUSION:DCB angioplasty did not demonstrate significant patency benefit for the treatment of hemodialysis vascular access dysfunction. Wide variations in patency outcomes across studies were noted. Further studies focusing on specific types of access or lesions are warranted to clarify the value of DCB for hemodialysis vascular access. (PROSPERO Number CRD42019119938).
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- 2020
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6. Predicting human protein subcellular localization by heterogeneous and comprehensive approaches.
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Chi-Hua Tung, Chi-Wei Chen, Han-Hao Sun, and Yen-Wei Chu
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Medicine ,Science - Abstract
Drug development and investigation of protein function both require an understanding of protein subcellular localization. We developed a system, REALoc, that can predict the subcellular localization of singleplex and multiplex proteins in humans. This system, based on comprehensive strategy, consists of two heterogeneous systematic frameworks that integrate one-to-one and many-to-many machine learning methods and use sequence-based features, including amino acid composition, surface accessibility, weighted sign aa index, and sequence similarity profile, as well as gene ontology function-based features. REALoc can be used to predict localization to six subcellular compartments (cell membrane, cytoplasm, endoplasmic reticulum/Golgi, mitochondrion, nucleus, and extracellular). REALoc yielded a 75.3% absolute true success rate during five-fold cross-validation and a 57.1% absolute true success rate in an independent database test, which was >10% higher than six other prediction systems. Lastly, we analyzed the effects of Vote and GANN models on singleplex and multiplex localization prediction efficacy. REALoc is freely available at http://predictor.nchu.edu.tw/REALoc.
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- 2017
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7. Trehalose-mediated autophagy impairs the anti-viral function of human primary airway epithelial cells.
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Qun Wu, Di Jiang, Chunjian Huang, Linda F van Dyk, Liwu Li, and Hong Wei Chu
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Medicine ,Science - Abstract
Human rhinovirus (HRV) is the most common cause of acute exacerbations of chronic lung diseases including asthma. Impaired anti-viral IFN-λ1 production and increased HRV replication in human asthmatic airway epithelial cells may be one of the underlying mechanisms leading to asthma exacerbations. Increased autophagy has been shown in asthmatic airway epithelium, but the role of autophagy in anti-HRV response remains uncertain. Trehalose, a natural glucose disaccharide, has been recognized as an effective autophagy inducer in mammalian cells. In the current study, we used trehalose to induce autophagy in normal human primary airway epithelial cells in order to determine if autophagy directly regulates the anti-viral response against HRV. We found that trehalose-induced autophagy significantly impaired IFN-λ1 expression and increased HRV-16 load. Inhibition of autophagy via knockdown of autophagy-related gene 5 (ATG5) effectively rescued the impaired IFN-λ1 expression by trehalose and subsequently reduced HRV-16 load. Mechanistically, ATG5 protein interacted with retinoic acid-inducible gene I (RIG-I) and IFN-β promoter stimulator 1 (IPS-1), two critical molecules involved in the expression of anti-viral interferons. Our results suggest that induction of autophagy in human primary airway epithelial cells inhibits the anti-viral IFN-λ1 expression and facilitates HRV infection. Intervention of excessive autophagy in chronic lung diseases may provide a novel approach to attenuate viral infections and associated disease exacerbations.
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- 2015
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8. A new Child-Turcotte-Pugh class 0 for patients with hepatocellular carcinoma: determinants, prognostic impact and ability to improve the current staging systems.
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Yun-Hsuan Lee, Chia-Yang Hsu, Chen-Wei Chu, Po-Hong Liu, Cheng-Yuan Hsia, Yi-Hsiang Huang, Chien-Wei Su, Yi-You Chiou, Han-Chieh Lin, and Teh-Ia Huo
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Medicine ,Science - Abstract
Majority of patients with hepatocellular carcinoma (HCC) belonged to Child-Turcotte-Pugh (CTP) class A. We aimed to identify a new class of patients with very well-preserved liver function and analyze its impact on outcome prediction, tumor staging and treatment allocation.A total of 2654 HCC patients were retrospectively analyzed. The prognostic ability was compared by the Akaike information criterion (AIC).The CTP class 0 was defined by fulfilling all criteria of albumin ≧4 g/dL, bilirubin ≦0.8 mg/dL, prothrombin time prolongation
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- 2014
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9. Electronic cigarette liquid increases inflammation and virus infection in primary human airway epithelial cells.
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Qun Wu, Di Jiang, Maisha Minor, and Hong Wei Chu
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Medicine ,Science - Abstract
The use of electronic cigarettes (e-cigarettes) is rapidly increasing in the United States, especially among young people since e-cigarettes have been perceived as a safer alternative to conventional tobacco cigarettes. However, the scientific evidence regarding the human health effects of e-cigarettes on the lung is extremely limited. The major goal of our current study is to determine if e-cigarette use alters human young subject airway epithelial functions such as inflammatory response and innate immune defense against respiratory viral (i.e., human rhinovirus, HRV) infection.We examined the effects of e-cigarette liquid (e-liquid) on pro-inflammatory cytokine (e.g., IL-6) production, HRV infection and host defense molecules (e.g., short palate, lung, and nasal epithelium clone 1, SPLUNC1) in primary human airway epithelial cells from young healthy non-smokers. Additionally, we examined the role of SPLUNC1 in lung defense against HRV infection using a SPLUNC1 knockout mouse model. We found that nicotine-free e-liquid promoted IL-6 production and HRV infection. Addition of nicotine into e-liquid further amplified the effects of nicotine-free e-liquid. Moreover, SPLUNC1 deficiency in mice significantly increased lung HRV loads. E-liquid inhibited SPLUNC1 expression in primary human airway epithelial cells. These findings strongly suggest the deleterious health effects of e-cigarettes in the airways of young people. Our data will guide future studies to evaluate the impact of e-cigarettes on lung health in human populations, and help inform the public about potential health risks of e-cigarettes.
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- 2014
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10. Cigarette smoke decreases airway epithelial FABP5 expression and promotes Pseudomonas aeruginosa infection.
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Fabienne Gally, Hong Wei Chu, and Russell P Bowler
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Medicine ,Science - Abstract
Cigarette smoking is the primary cause of Chronic Obstructive Pulmonary Disease (COPD), which is characterized by chronic inflammation of the airways and destruction of lung parenchyma. Repeated and sustained bacterial infections are clearly linked to disease pathogenesis (e.g., exacerbations) and a huge burden on health care costs. The airway epithelium constitutes the first line of host defense against infection and our previous study indicated that Fatty Acid Binding Protein 5 (FABP5) is down regulated in airway epithelial cells of smokers with COPD as compared to smokers without COPD. We hypothesized that cigarette smoke (CS) exposure down regulates FABP5, thus, contributing to a more sustained inflammation in response to bacterial infection. In this report, we show that FABP5 is increased following bacterial infection but decreased following CS exposure of primary normal human bronchial epithelial (NHBE) cells. The goal of this study was to address FABP5 function by knocking down or overexpressing FABP5 in primary NHBE cells exposed to CS. Our data indicate that FABP5 down regulation results in increased P. aeruginosa bacterial load and inflammatory cytokine levels (e.g., IL-8) and decreased expression of the anti-bacterial peptide, β defensin-2. On the contrary, FABP5 overexpression exerts a protective function in airway epithelial cells against P. aeruginosa infection by limiting the production of IL-8 and increasing the expression of β defensin-2. Our study indicates that FABP5 exerts immunomodulatory functions in the airway epithelium against CS exposure and subsequent bacterial infection through its modulation of the nuclear receptor peroxisome proliferator-activated receptor (PPAR)-γ activity. These findings support the development of FABP5/PPAR-γ-targeted therapeutic approach to prevent airway inflammation by restoring antimicrobial immunity during COPD exacerbations.
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- 2013
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11. Human neutrophil elastase degrades SPLUNC1 and impairs airway epithelial defense against bacteria.
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Di Jiang, Sally E Wenzel, Qun Wu, Russell P Bowler, Christina Schnell, and Hong Wei Chu
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Medicine ,Science - Abstract
Acute exacerbations of chronic obstructive pulmonary disease (AECOPD) are a significant cause of mortality of COPD patients, and pose a huge burden on healthcare. One of the major causes of AECOPD is airway bacterial (e.g. nontypeable Haemophilus influenzae [NTHi]) infection. However, the mechanisms underlying bacterial infections during AECOPD remain poorly understood. As neutrophilic inflammation including increased release of human neutrophil elastase (HNE) is a salient feature of AECOPD, we hypothesized that HNE impairs airway epithelial defense against NTHi by degrading airway epithelial host defense proteins such as short palate, lung, and nasal epithelium clone 1 (SPLUNC1).Recombinant human SPLUNC1 protein was incubated with HNE to confirm SPLUNC1 degradation by HNE. To determine if HNE-mediated impairment of host defense against NTHi was SPLUNC1-dependent, SPLUNC1 protein was added to HNE-treated primary normal human airway epithelial cells. The in vivo function of SPLUNC1 in NTHi defense was investigated by infecting SPLUNC1 knockout and wild-type mice intranasally with NTHi. We found that: (1) HNE directly increased NTHi load in human airway epithelial cells; (2) HNE degraded human SPLUNC1 protein; (3) Recombinant SPLUNC1 protein reduced NTHi levels in HNE-treated human airway epithelial cells; (4) NTHi levels in lungs of SPLUNC1 knockout mice were increased compared to wild-type mice; and (5) SPLUNC1 was reduced in lungs of COPD patients.Our findings suggest that SPLUNC1 degradation by neutrophil elastase may increase airway susceptibility to bacterial infections. SPLUNC1 therapy likely attenuates bacterial infections during AECOPD.
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- 2013
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12. Blood multiomics reveal insights into population clusters with low prevalence of diabetes, dyslipidemia and hypertension
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Hou-Wei Chu, Pei-Ei Wu, Chien-Wei Lin, Chen-Yang Shen, Chia-Ni Hsiung, Chung-ke Chang, Shiu-Jie Ling, and Ming-Wei Su
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0301 basic medicine ,Male ,Epidemiology ,Prevalence ,Physiology ,Genome-wide association study ,Blood Pressure ,Disease ,Vascular Medicine ,Biochemistry ,Cohort Studies ,chemistry.chemical_compound ,0302 clinical medicine ,Endocrinology ,Medicine and Health Sciences ,Cluster Analysis ,education.field_of_study ,Multidisciplinary ,Genomics ,Middle Aged ,Healthy Volunteers ,Phenotypes ,Phenotype ,Hypertension ,Metabolome ,Medicine ,Female ,Research Article ,Adult ,Genotype ,Endocrine Disorders ,Science ,Lipoproteins ,Population ,Taiwan ,Polymorphism, Single Nucleotide ,03 medical and health sciences ,Diabetes mellitus ,medicine ,Diabetes Mellitus ,Genetics ,Genome-Wide Association Studies ,Metabolomics ,Humans ,education ,Dyslipidemias ,Cholesterol ,business.industry ,Biology and Life Sciences ,Proteins ,Computational Biology ,Human Genetics ,Cholesterol, LDL ,medicine.disease ,Genome Analysis ,030104 developmental biology ,Metabolism ,chemistry ,Dyslipidemia ,Metabolic Disorders ,business ,030217 neurology & neurosurgery ,Genome-Wide Association Study - Abstract
Diabetes, dyslipidemia and hypertension are important metabolic diseases that impose a great burden on many populations worldwide. However, certain population strata have reduced prevalence for all three diseases, but the underlying mechanisms are poorly understood. We sought to identify the phenotypic, genomic and metabolomic characteristics of the low-prevalence population to gain insights into possible innate non-susceptibility against metabolic diseases. We performed k-means cluster analysis of 16,792 subjects using anthropometric and clinical biochemistry data collected by the Taiwan Biobank. Nuclear magnetic resonance spectra-based metabolome analysis was carried out for 217 subjects with normal body mass index, good exercise habits and healthy lifestyles. We found that the gene APOA5 was significantly associated with reduced prevalence of disease, and lesser associations included the genes HIF1A, LIMA1, LPL, MLXIPL, and TRPC4. Blood plasma of subjects belonging to the low disease prevalence cluster exhibited lowered levels of the GlycA inflammation marker, very low-density lipoprotein and low-density lipoprotein cholesterol, triglycerides, valine and leucine compared to controls. Literature mining revealed that these genes and metabolites are biochemically linked, with the linkage between lipoprotein metabolism and inflammation being particularly prominent. The combination of phenomic, genomic and metabolomic analysis may also be applied towards the study of metabolic disease prevalence in other populations.
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- 2020
13. Human alveolar epithelial cell injury induced by cigarette smoke.
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Beata Kosmider, Elise M Messier, Hong Wei Chu, and Robert J Mason
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Medicine ,Science - Abstract
Cigarette smoke (CS) is a highly complex mixture and many of its components are known carcinogens, mutagens, and other toxic substances. CS induces oxidative stress and cell death, and this cell toxicity plays a key role in the pathogenesis of several pulmonary diseases.We studied the effect of cigarette smoke extract (CSE) in human alveolar epithelial type I-like (ATI-like) cells. These are isolated type II cells that are differentiating toward the type I cell phenotype in vitro and have lost many type II cell markers and express type I cell markers. ATI-like cells were more sensitive to CSE than alveolar type II cells, which maintained their differentiated phenotype in vitro. We observed disruption of mitochondrial membrane potential, apoptosis and necrosis that were detected by double staining with acridine orange and ethidium bromide or Hoechst 33342 and propidium iodide and TUNEL assay after treatment with CSE. We also detected caspase 3 and caspase 7 activities and lipid peroxidation. CSE induced nuclear translocation of Nrf2 and increased expression of Nrf2, HO-1, Hsp70 and Fra1. Moreover, we found that Nrf2 knockdown sensitized ATI-like cells to CSE and Nrf2 overexpression provided protection against CSE-induced cell death. We also observed that two antioxidant compounds N-acetylcysteine and trolox protected ATI-like cells against injury by CSE.Our study indicates that Nrf2 activation is a major factor in cellular defense of the human alveolar epithelium against CSE-induced toxicity and oxidative stress. Therefore, antioxidant agents that modulate Nrf2 would be expected to restore antioxidant and detoxifying enzymes and to prevent CS-related lung injury and perhaps lessen the development of emphysema.
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- 2011
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14. siPRED: predicting siRNA efficacy using various characteristic methods.
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Wei-Jie Pan, Chi-Wei Chen, and Yen-Wei Chu
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Medicine ,Science - Abstract
Small interfering RNA (siRNA) has been used widely to induce gene silencing in cells. To predict the efficacy of an siRNA with respect to inhibition of its target mRNA, we developed a two layer system, siPRED, which is based on various characteristic methods in the first layer and fusion mechanisms in the second layer. Characteristic methods were constructed by support vector regression from three categories of characteristics, namely sequence, features, and rules. Fusion mechanisms considered combinations of characteristic methods in different categories and were implemented by support vector regression and neural networks to yield integrated methods. In siPRED, the prediction of siRNA efficacy through integrated methods was better than through any method that utilized only a single method. Moreover, the weighting of each characteristic method in the context of integrated methods was established by genetic algorithms so that the effect of each characteristic method could be revealed. Using a validation dataset, siPRED performed better than other predictive systems that used the scoring method, neural networks, or linear regression. Finally, siPRED can be improved to achieve a correlation coefficient of 0.777 when the threshold of the whole stacking energy is ≥-34.6 kcal/mol. siPRED is freely available on the web at http://predictor.nchu.edu.tw/siPRED.
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- 2011
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15. Effect of a 90 g/day low-carbohydrate diet on glycaemic control, small, dense low-density lipoprotein and carotid intima-media thickness in type 2 diabetic patients: An 18-month randomised controlled trial
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Chen, Chin-Ying, primary, Huang, Wei-Sheng, additional, Chen, Hui-Chuen, additional, Chang, Chin-Hao, additional, Lee, Long-Teng, additional, Chen, Heng-Shuen, additional, Kang, Yow-Der, additional, Chie, Wei-Chu, additional, Jan, Chyi-Feng, additional, Wang, Wei-Dean, additional, and Tsai, Jaw-Shiun, additional
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- 2020
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16. Drug-coated balloon versus conventional balloon angioplasty of hemodialysis arteriovenous fistula or graft: A systematic review and meta-analysis of randomized controlled trials
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Liao, Min-Tsun, primary, Chen, Meng-Kan, additional, Hsieh, Mu-Yang, additional, Yeh, Nai-Lun, additional, Chien, Kuo-Liong, additional, Lin, Chih-Ching, additional, Wu, Chih-Cheng, additional, and Chie, Wei-Chu, additional
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- 2020
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17. Effect of a 90 g/day low-carbohydrate diet on glycaemic control, small, dense low-density lipoprotein and carotid intima-media thickness in type 2 diabetic patients: An 18-month randomised controlled trial
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Wei-Sheng Huang, Wei-Chu Chie, Yow-Der Kang, Wei-Dean Wang, Chyi-Feng Jan, Hui-Chuen Chen, Chin-Ying Chen, Heng-Shuen Chen, Long-Teng Lee, Jaw-Shiun Tsai, and Chin-Hao Chang
- Subjects
Blood Glucose ,Male ,Physiology ,medicine.medical_treatment ,Type 2 diabetes ,Gastroenterology ,Carotid Intima-Media Thickness ,Biochemistry ,chemistry.chemical_compound ,Diet, Carbohydrate-Restricted ,0302 clinical medicine ,Endocrinology ,Medical Conditions ,Medicine and Health Sciences ,Diabetes diagnosis and management ,Medicine ,030212 general & internal medicine ,Aged, 80 and over ,Multidisciplinary ,Organic Compounds ,Monosaccharides ,Middle Aged ,Type 2 Diabetes ,Lipoproteins, LDL ,Chemistry ,Treatment Outcome ,Physiological Parameters ,Physical Sciences ,Female ,Research Article ,Adult ,medicine.medical_specialty ,Waist ,HbA1c ,Endocrine Disorders ,Science ,Carbohydrates ,030209 endocrinology & metabolism ,03 medical and health sciences ,Young Adult ,Internal medicine ,Diabetes mellitus ,Diabetes Mellitus ,Humans ,Hemoglobin ,Aged ,Nutrition ,Glycated Hemoglobin ,Creatinine ,Biology and life sciences ,business.industry ,Organic Chemistry ,Body Weight ,Chemical Compounds ,Proteins ,medicine.disease ,Atherosclerosis ,Diagnostic medicine ,Diet ,Diabetic diet ,Blood pressure ,Glucose ,chemistry ,Intima-media thickness ,Diabetes Mellitus, Type 2 ,Diet and Type 2 Diabetes ,Metabolic Disorders ,Microalbuminuria ,business - Abstract
AimThis study explored the effect of a moderate (90 g/d) low-carbohydrate diet (LCD) in type 2 diabetes patients over 18 months.MethodsNinety-two poorly controlled type 2 diabetes patients aged 20-80 years with HbA1c ≥7.5% (58 mmol/mol) in the previous three months were randomly assigned to a 90 g/d LCD r traditional diabetic diet (TDD). The primary outcomes were glycaemic control status and change in medication effect score (MES). The secondary outcomes were lipid profiles, small, dense low-density lipoprotein (sdLDL), serum creatinine, microalbuminuria and carotid intima-media thickness (IMT).ResultsA total of 85 (92.4%) patients completed 18 months of the trial. At the end of the study, the LCD and TDD group consumed 88.0±29.9 g and 151.1±29.8 g of carbohydrates, respectively (p < 0.05). The 18-month mean change from baseline was statistically significant for the HbA1c (-1.6±0.3 vs. -1.0±0.3%), 2-h glucose (-94.4±20.8 vs. -18.7±25.7 mg/dl), MES (-0.42±0.32 vs. -0.05±0.24), weight (-2.8±1.8 vs. -0.7±0.7 kg), waist circumference (-5.7±2.7 vs. -1.9±1.4 cm), hip circumference (-6.1±1.8 vs. -2.9±1.7 cm) and blood pressure (-8.3±4.6/-5.0±3 vs. 1.6±0.5/2.5±1.6 mmHg) between the LCD and TDD groups (pConclusionsA moderate (90 g/d) LCD showed better glycaemic control with decreasing MES, lowering blood pressure, decreasing weight, waist and hip circumference without adverse effects on lipid profiles, sdLDL, serum creatinine, microalbuminuria, ALT and carotid IMT than TDD for type 2 diabetic patients.
- Published
- 2020
18. Drug-coated balloon versus conventional balloon angioplasty of hemodialysis arteriovenous fistula or graft: A systematic review and meta-analysis of randomized controlled trials
- Author
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Wei-Chu Chie, Chih Ching Lin, Mu-Yang Hsieh, Nai Lun Yeh, Meng-Kan Chen, Chih-Cheng Wu, Kuo-Liong Chien, and Min-Tsun Liao
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Target lesion ,Male ,medicine.medical_specialty ,Time Factors ,medicine.medical_treatment ,Science ,Arteriovenous fistula ,Constriction, Pathologic ,030204 cardiovascular system & hematology ,Balloon ,030218 nuclear medicine & medical imaging ,law.invention ,03 medical and health sciences ,Peripheral Arterial Disease ,0302 clinical medicine ,Restenosis ,Randomized controlled trial ,Coated Materials, Biocompatible ,law ,Renal Dialysis ,Angioplasty ,medicine ,Humans ,Popliteal Artery ,Vascular Patency ,Aged ,Randomized Controlled Trials as Topic ,Aged, 80 and over ,Multidisciplinary ,business.industry ,Graft Occlusion, Vascular ,Correction ,Cardiovascular Agents ,Middle Aged ,medicine.disease ,Surgery ,Femoral Artery ,Stenosis ,Treatment Outcome ,Arteriovenous Fistula ,Medicine ,Female ,Hemodialysis ,business ,Angioplasty, Balloon ,Vascular Access Devices - Abstract
BACKGROUND Restenosis remains a significant problem in endovascular therapy for hemodialysis vascular access. Drug-coated balloon (DCB) angioplasty decreases restenosis in peripheral and coronary artery diseases. The aim of this systematic review and meta-analysis is to assess the patency outcomes following DCB angioplasty, as compared to conventional balloon (CB) angioplasty for the stenosis of hemodialysis vascular access. METHODS A comprehensive search in the MEDLINE, EMBASE, and CENTRAL databases was conducted in order to identify eligible randomized controlled trials evaluating DCB angioplasty for hemodialysis vascular access dysfunction. The primary endpoint was the 6-month target lesion primary patency and the secondary endpoints were 12-month target lesion primary patency and procedure-related complications. Risk ratios (RR) were pooled and relevant subgroups were analyzed separately. RESULTS Eleven randomized controlled trials comprised of 487 patients treated with DCB angioplasty and 489 patients treated with CB angioplasty were included. There were no significant differences in the target lesion primary patency at 6 months [RR, 0.75; 95% confidence interval (CI), 0.56, 1.01; p = 0.06] and at 12 months (RR 0.89; 95% CI, 0.79, 1.00; p = 0.06). The absence of benefit for the DCB group remained, even in the arteriovenous fistula subgroup or the subgroup of studies excluding central vein stenosis. The risk of procedure-related complication did not differ between the two groups (RR 1.00; 95% CI 0.98, 1.02; p = 0.95). CONCLUSION DCB angioplasty did not demonstrate significant patency benefit for the treatment of hemodialysis vascular access dysfunction. Wide variations in patency outcomes across studies were noted. Further studies focusing on specific types of access or lesions are warranted to clarify the value of DCB for hemodialysis vascular access. (PROSPERO Number CRD42019119938).
- Published
- 2019
19. dBMHCC: A comprehensive hepatocellular carcinoma (HCC) biomarker database provides a reliable prediction system for novel HCC phosphorylated biomarkers
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Mei-I Sung, Chi-Wei Chen, Ching-Hsuan Chien, Yen-Wei Chu, and Yu-Ting Chen
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0301 basic medicine ,Databases, Factual ,computer.software_genre ,Biochemistry ,chemistry.chemical_compound ,Mice ,Database and Informatics Methods ,0302 clinical medicine ,Medicine and Health Sciences ,Protein phosphorylation ,Phosphorylation ,Post-Translational Modification ,Database Searching ,Multidisciplinary ,Database ,Kinase ,Liver Diseases ,Liver Neoplasms ,Drug Information ,Prognosis ,Enzymes ,Subcellular Localization ,Oncology ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,Biomarker (medicine) ,Medicine ,Cellular Structures and Organelles ,Sequence Analysis ,Research Article ,Carcinoma, Hepatocellular ,Bioinformatics ,Science ,PDGFRA ,Gastroenterology and Hepatology ,Research and Analysis Methods ,Carcinomas ,03 medical and health sciences ,Sequence Motif Analysis ,Regorafenib ,Gastrointestinal Tumors ,medicine ,Biomarkers, Tumor ,Animals ,Humans ,neoplasms ,Pharmacology ,Internet ,business.industry ,Cancer ,Computational Biology ,Cancers and Neoplasms ,Biology and Life Sciences ,Proteins ,Hepatocellular Carcinoma ,Cell Biology ,medicine.disease ,digestive system diseases ,030104 developmental biology ,Acireductone dioxygenase ,chemistry ,Enzymology ,business ,computer ,Protein Kinases ,Biomarkers - Abstract
Hepatocellular carcinoma (HCC), which is associated with an absence of obvious symptoms and poor prognosis, is the second leading cause of cancer death worldwide. Genome-wide molecular biology studies should provide biological insights into HCC development. Based on the importance of phosphorylation for signal transduction, several protein kinase inhibitors have been developed that improve the survival of cancer patients. However, a comprehensive database of HCC-related phosphorylated biomarkers (HCCPMs) and novel HCCPMs prediction platform has been lacking. We have thus constructed the dBMHCC databases to provide expression profiles, phosphorylation and drug information, and evidence type; gathered information on HCC-related pathways and their involved genes as candidate HCC biomarkers; and established a system for evaluating protein phosphorylation and HCC-related biomarkers to improve the reliability of biomarker prediction. The resulting dBMHCC contains 611 notable HCC-related genes, 234 HCC-related pathways, 17 phosphorylation-related motifs and their 255 corresponding protein kinases, 5955 HCC biomarkers, and 1077 predicted HCCPMs. Methionine adenosyltransferase 2B (MAT2B) and acireductone dioxygenase 1 (ADI1), which regulate HCC development and hepatitis C virus infection, respectively, were among the top 10 HCCPMs predicted by dBMHCC. Platelet-derived growth factor receptor alpha (PDGFRA), which had the highest evaluation score, was identified as the target of one HCC drug (Regorafenib), five cancer drugs, and four non-cancer drugs. dBMHCC is an open resource for HCC phosphorylated biomarkers, which supports researchers investigating the development of HCC and designing novel diagnosis methods and drug treatments. Database URL: http://predictor.nchu.edu.tw/dBMHCC.
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- 2019
20. Transcriptomic analysis elucidates the molecular processes associated with hydrogen peroxide-induced diapause termination in Artemia-encysted embryos
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Jui-Wen Ma, Bonien Chen, Tsung-Meng Wu, Chih-Ming Liang, Ming-Chang Hong, Tah-Wei Chu, Wei-Kuang Wang, and Kuo-Hsun Chiu
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Cell signaling ,Embryo, Nonmammalian ,Physiology ,Gene Expression ,Signal transduction ,Transcriptome ,Gene expression ,Membrane Receptor Signaling ,0303 health sciences ,Multidisciplinary ,biology ,030302 biochemistry & molecular biology ,Signaling cascades ,Gene Expression Regulation, Developmental ,Embryo ,Genomics ,Hormone Receptor Signaling ,cAMP signaling cascade ,Up-Regulation ,Cell biology ,Engineering and Technology ,Medicine ,Transcriptome Analysis ,Research Article ,MAPK signaling cascades ,Science ,Down-Regulation ,Diapause ,03 medical and health sciences ,Genetics ,Animals ,Gene Regulation ,KEGG ,030304 developmental biology ,Hippo signaling pathway ,Biology and life sciences ,Gene Expression Profiling ,Computational Biology ,Molecular Sequence Annotation ,Hydrogen Peroxide ,Genome Analysis ,biology.organism_classification ,Metabolic pathway ,Gene Ontology ,Signal Processing ,Artemia ,Artemia salina ,Physiological Processes ,Developmental Biology - Abstract
Treatment with hydrogen peroxide (H2O2) raises the hatching rate through the development and diapause termination ofArtemiacysts. To comprehend the upstream genetic regulation of diapause termination activated by exterior H2O2elements, an Illumina RNA-seq analysis was performed to recognize and assess comparative transcript amounts to explore the genetic regulation of H2O2in starting the diapause termination of cysts inArtemia salina. We examined three groupings treated with no H2O2(control), 180 μM H2O2(low) and 1800 μM H2O2(high). The results showed a total of 114,057 unigenes were identified, 41.22% of which were functionally annotated in at least one particular database. When compared to control group, 34 and 98 differentially expressed genes (DEGs) were upregulated in 180 μM and 1800 μM H2O2treatments, respectively. On the other hand, 162 and 30 DEGs were downregulated in the 180 μM and 1800 μM H2O2treatments, respectively. Cluster analysis of DEGs demonstrated significant patterns among these types of 3 groups. GO and KEGG enrichment analysis showed the DEGs involved in the regulation of blood coagulation (GO: 0030193; GO: 0050818), regulation of wound healing (GO:0061041), regulation of hemostasis (GO: 1900046), antigen processing and presentation (KO04612), the Hippo signaling pathway (KO04391), as well as the MAPK signaling pathway (KO04010). This research helped to define the diapause-related transcriptomes ofArtemiacysts using RNA-seq technology, which might fill up a gap in the prevailing body of knowledge.
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- 2021
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21. QUATgo: Protein quaternary structural attributes predicted by two-stage machine learning approaches with heterogeneous feature encoding
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Chi-Wei Chen, Yu-Nan Liu, Lan-Ying Huang, Yen-Wei Chu, Chi-Hua Tung, and Ching-Hsuan Chien
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0301 basic medicine ,Support Vector Machine ,Computer science ,Protein Structure Prediction ,Protein Sequencing ,Proteomics ,Biochemistry ,Machine Learning ,Database and Informatics Methods ,Protein Structure Databases ,Mathematical and Statistical Techniques ,0302 clinical medicine ,Sequence Analysis, Protein ,Macromolecular Structure Analysis ,Databases, Protein ,Materials ,Multidisciplinary ,Statistics ,030220 oncology & carcinogenesis ,Physical Sciences ,Medicine ,Structural Proteins ,Sequence Analysis ,Algorithms ,Research Article ,Protein Structure ,Bioinformatics ,Science ,Feature vector ,Protein subunit ,Materials Science ,Sequence Databases ,Research and Analysis Methods ,Viral Proteins ,03 medical and health sciences ,Protein Domains ,Animals ,Humans ,Statistical Methods ,Molecular Biology Techniques ,Sequencing Techniques ,Protein Structure, Quaternary ,Molecular Biology ,business.industry ,Biology and Life Sciences ,Proteins ,Computational Biology ,Pattern recognition ,Biological Databases ,030104 developmental biology ,Oligomers ,Protein quaternary structure ,Artificial intelligence ,business ,Classifier (UML) ,Mathematics ,Software ,Forecasting - Abstract
Many proteins exist in natures as oligomers with various quaternary structural attributes rather than as single chains. Predicting these attributes is an essential task in computational biology for the advancement of proteomics. However, the existing methods do not consider the integration of heterogeneous coding and the accuracy of subunit categories with limited data. To this end, we proposed a tool that can predict more than 12 subunit protein oligomers, QUATgo. Meanwhile, three kinds of sequence coding were used, including dipeptide composition, which was used for the first time to predict protein quaternary structural attributes, and protein half-life characteristics, and we modified the coding method of the functional domain composition proposed by predecessors to solve the problem of large feature vectors. QUATgo solves the problem of insufficient data for a single subunit using a two-stage architecture and uses 10-fold cross-validation to test the predictive accuracy of the classifier. QUATgo has 49.0% cross-validation accuracy and 31.1% independent test accuracy. In the case study, the accuracy of QUATgo can reach 61.5% for predicting the quaternary structure of influenza virus hemagglutinin proteins. Finally, QUATgo is freely accessible to the public as a web server via the site http://predictor.nchu.edu.tw/QUATgo.
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- 2020
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22. Impact of mycoplasma pneumonia infection on urticaria: A nationwide, population-based retrospective cohort study in Taiwan
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Yong, Su-Boon, primary, Yeh, Wei-Chu, additional, Wu, Hsing-Ju, additional, Chen, Huang-Hsi, additional, Huang, Jing-Yang, additional, Chang, Tung-Ming, additional, and Wei, James Cheng-Chung, additional
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- 2019
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23. Impact of mycoplasma pneumonia infection on urticaria: A nationwide, population-based retrospective cohort study in Taiwan
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Wei-Chu Yeh, Jing-Yang Huang, Hsing-Ju Wu, James Cheng-Chung Wei, Tung-Ming Chang, Huang-Hsi Chen, and Su-Boon Yong
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Male ,Bacterial Diseases ,Mycoplasma Pneumonia ,Urticaria ,Pulmonology ,Pathology and Laboratory Medicine ,Pediatrics ,030207 dermatology & venereal diseases ,Mycoplasma ,0302 clinical medicine ,Risk Factors ,immune system diseases ,Medicine and Health Sciences ,Mycoplasma Pneumoniae ,Longitudinal Studies ,Child ,skin and connective tissue diseases ,education.field_of_study ,Multidisciplinary ,Incidence ,Incidence (epidemiology) ,Hazard ratio ,Middle Aged ,Bacterial Pathogens ,Infectious Diseases ,Medical Microbiology ,Child, Preschool ,Medicine ,Female ,Pathogens ,Pediatric Infections ,Research Article ,Cohort study ,Adult ,medicine.medical_specialty ,Adolescent ,Science ,Population ,Taiwan ,Mollicutes ,Dermatology ,Microbiology ,Young Adult ,03 medical and health sciences ,Diagnostic Medicine ,Streptococcal Infections ,Internal medicine ,Pneumonia, Mycoplasma ,parasitic diseases ,Upper Respiratory Tract Infections ,medicine ,Humans ,Propensity Score ,education ,Microbial Pathogens ,Proportional Hazards Models ,Retrospective Studies ,030203 arthritis & rheumatology ,Bacteria ,Proportional hazards model ,business.industry ,Organisms ,Biology and Life Sciences ,Retrospective cohort study ,Pneumonia ,medicine.disease ,Relative risk ,Multivariate Analysis ,Respiratory Infections ,Mycoplasma pneumonia ,business - Abstract
Mycoplasma pneumonia (MP) infection might be pathogenically closely related to urticaria. This study is a nationwide population-based cohort study from 1997 to 2013, which investigated the association between MP infection and urticaria in Taiwan. A total of 1,175 patients were included for the study group, and 2,350 for the control group. Multivariate Cox regression analysis was performed to estimate the adjusted hazard ratio (aHR) for urticaria. Result showed that 254 patients with new-onset urticaria were involved in the study group and 465 incident cases in the control group. The incidence rates (per 100,000 person-months) of urticaria were 37.2 and 32.5 in the study and control groups, respectively. The relative risk is 1.1 (95% CI = 1.0–1.3) indicating no significant correlation between MP and urticaria. The multivariate analysis revealed that the risk of urticaria with MP infection (aHR = 1.1, P = 0.1058) had no statistically significance difference compared to the control group. However, the risk of urticaria in MP-infected patients aged between 20 and 59 years old was found to have increased (aHR = 1.6, 95% CI = 1.1–2.2) prior to a diagnosis.
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- 2019
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24. Impact of universal drug susceptibility testing and effective management of multidrug-resistant tuberculosis in Taiwan
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Ruwen Jou, Jen Jyh Lee, Yi-Wen Huang, Yen Ting Peng, Chen Yuan Chiang, Mei Hua Wu, Pei Chun Chan, Po Wei Chu, Shun Tien Chien, Chou Jui Lin, Pin Hui Lee, and Ming Chih Yu
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Male ,Bacterial Diseases ,0301 basic medicine ,Extensively Drug-Resistant Tuberculosis ,Antitubercular Agents ,Geographical Locations ,0302 clinical medicine ,Tuberculosis, Multidrug-Resistant ,Epidemiology ,Medicine and Health Sciences ,Public and Occupational Health ,030212 general & internal medicine ,Young adult ,Multidisciplinary ,Pharmaceutics ,Incidence ,Multi-Drug-Resistant Tuberculosis ,Multi-drug-resistant tuberculosis ,Incidence (epidemiology) ,Middle Aged ,Treatment Outcome ,Infectious Diseases ,Tuberculosis Diagnosis and Management ,Medicine ,Female ,Research Article ,Adult ,medicine.medical_specialty ,Asia ,Tuberculosis ,Science ,030106 microbiology ,Taiwan ,Microbial Sensitivity Tests ,Young Adult ,03 medical and health sciences ,Pharmacotherapy ,Drug Therapy ,Diagnostic Medicine ,Internal medicine ,medicine ,Humans ,Aged ,Pharmacology ,Drug Screening ,business.industry ,Extensively drug-resistant tuberculosis ,Mycobacterium tuberculosis ,Tropical Diseases ,medicine.disease ,Directly Observed Therapy ,Multiple drug resistance ,People and Places ,business - Abstract
Background The treatment outcomes of multidrug-resistant tuberculosis (MDR-TB) patients in the 1990s in Taiwan was not satisfactory. To strengthen programmatic management of drug-resistant tuberculosis (PMDT), Taiwan MDR-TB Consortium (TMTC) was established in 2007. We assess the performance and epidemiologic impact of TMTC. Methodology/Principle findings We analyzed the trends of proportion of TB cases with drug susceptibility testing, enrollment of MDR-TB patients into TMTC and outcomes of treatment of all MDR-TB patients in Taiwan from 2007–2016. We computed the trends of both incidence and prevalence of MDR-TB from 2007–2016. We assessed the trends of MDR-TB among both new and recurrent TB cases. The proportion of TB cases with drug susceptibility testing results increased from 24.2% in 2007 to 97.9% in 2016. Of the 1,452 MDR-TB patients who were eligible for TMTC care, 1,197 (82.4%) were enrolled in TMTC, in whom 82.9% had treatment success. MDR-TB incidence was 9.0 cases per million in 2007, which declined to 4.6 cases per million in 2016 (p
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- 2019
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25. MUC18 Regulates Lung Rhinovirus Infection and Inflammation
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Di Jiang, Niccolette Schaefer, Reena Berman, Connor Stevenson, Hong Wei Chu, and Qun Wu
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0301 basic medicine ,Viral Diseases ,Rhinovirus ,Neutrophils ,lcsh:Medicine ,Gene Expression ,medicine.disease_cause ,Pathology and Laboratory Medicine ,Epithelium ,White Blood Cells ,Mice ,0302 clinical medicine ,Animal Cells ,Medicine and Health Sciences ,Respiratory system ,lcsh:Science ,Immune Response ,Cells, Cultured ,Mice, Knockout ,Gene knockdown ,Multidisciplinary ,Animal Models ,respiratory system ,Viral Load ,3. Good health ,Trachea ,medicine.anatomical_structure ,Infectious Diseases ,medicine.symptom ,Cellular Types ,Anatomy ,Viral load ,Research Article ,Immune Cells ,Immunology ,Context (language use) ,Inflammation ,Mouse Models ,CD146 Antigen ,Biology ,Rhinovirus Infection ,Research and Analysis Methods ,Microbiology ,03 medical and health sciences ,Model Organisms ,Signs and Symptoms ,In vivo ,Diagnostic Medicine ,Virology ,medicine ,Genetics ,Animals ,Humans ,Lung ,Blood Cells ,Picornaviridae Infections ,lcsh:R ,Biology and Life Sciences ,Epithelial Cells ,Cell Biology ,respiratory tract diseases ,Disease Models, Animal ,030104 developmental biology ,Biological Tissue ,030228 respiratory system ,Gene Expression Regulation ,lcsh:Q ,Viral Transmission and Infection - Abstract
Background MUC18 is upregulated in the lungs of asthma and COPD patients. It has been shown to have pro-inflammatory functions in cultured human airway epithelial cells during viral infections and in mice during lung bacterial infections. However, the in vivo role of MUC18 in the context of viral infections remains poorly understood. The goal of this study is to define the in vivo function of MUC18 during respiratory rhinovirus infection. Methods Muc18 wild-type (WT) and knockout (KO) mice were infected with human rhinovirus 1B (HRV-1B) and sacrificed after 1 day to determine the inflammatory and antiviral responses. To examine the direct effects of Muc18 on viral infection, tracheal epithelial cells isolated from WT and KO mice were grown under air-liquid interface and infected with HRV-1B. Finally, siRNA mediated knockdown of MUC18 was performed in human airway epithelial cells (AECs) to define the impact of MUC18 on human airway response to HRV-1B. Results Both viral load and neutrophilic inflammation were significantly decreased in Muc18 KO mice compared to WT mice. In the in vitro setting, viral load was significantly lower and antiviral gene expression was higher in airway epithelial cells of Muc18 KO mice than the WT mice. Furthermore, in MUC18 knockdown human AECs, viral load was decreased and antiviral gene expression was increased compared to controls. Conclusions Our study is the first to demonstrate MUC18’s pro-inflammatory and pro-viral function in an in vivo mouse model of rhinovirus infection.
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- 2016
26. Therapeutic Effects of α1-Antitrypsin on Psedumonas aeruginosa Infection in ENaC Transgenic Mice
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Di Jiang, Carrie Happoldt, David P. Nichols, Hong Wei Chu, and Reena Berman
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Genetically modified mouse ,Epithelial sodium channel ,lcsh:Medicine ,Inflammation ,Mice, Transgenic ,medicine.disease_cause ,Cystic fibrosis ,Fibrin ,Mice ,medicine ,Animals ,Pseudomonas Infections ,lcsh:Science ,Epithelial Sodium Channels ,Multidisciplinary ,Lung ,medicine.diagnostic_test ,biology ,Pseudomonas aeruginosa ,lcsh:R ,respiratory system ,medicine.disease ,Anti-Bacterial Agents ,Mice, Inbred C57BL ,Bronchoalveolar lavage ,medicine.anatomical_structure ,alpha 1-Antitrypsin ,Immunology ,biology.protein ,lcsh:Q ,medicine.symptom ,Research Article - Abstract
Cystic fibrosis (CF) is a genetic disease with many airway pathological features, including aberrant epithelial sodium channel (ENaC) function, persistent Pseudomonas aeruginosa (PA) infection and neutrophil-dominant inflammation. PA infection in CF airways is difficult to treat due to antibiotic resistance and other factors. Recently, α1-antitrypsin (A1AT) have been shown to be effective to reduce CF airway PA infection. However, there is a dearth of studies about the mechanisms underlying A1AT's therapeutic effects. The goal of our study is to provide an animal model of A1AT therapy in CF lungs. ENaC transgenic mice with PA infection were used as a CF-like model. Mice were intratracheally treated with PA or saline (control) in a fibrin plug. Two hours after PA infection, aerosolized A1AT were delivered to mouse lungs once daily. At day 1 and day 3 post PA infection, lung inflammation, PA load as well as host defence protein short palate, lung, and nasal epithelium clone 1 (SPLUNC1) were measured. At day 1 post PA infection when A1AT was delivered once to ENaC transgenic mouse lungs, A1AT did not reduce lung inflammation (e.g., neutrophils) and PA load. However, at day 3 post PA infection when ENaC transgenic mice received three repeated A1AT treatments, a significant decrease in airspace inflammation and PA load was observed. Although A1AT prevented the loss of SPLUNC1 in bronchoalveolar lavage fluid of PA-infected wild-type mice, it did not restore SPLUNC1 levels in ENaC transgenic mice. Our current study has provided a valid and quick A1AT therapeutic model in CF-like lungs that may serve as a platform for future mechanistic studies about how A1AT exerts beneficial effects in human CF patients.
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- 2015
27. The Effect of MicroRNA-124 Overexpression on Anti-Tumor Drug Sensitivity
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Hou Wei Chu, Shiau Mei Chen, Wen Cheng Chou, Jyh Cherng Yu, Chen-Yang Shen, Huan Ming Hsu, Chia-Ni Hsiung, Yuan Ling Huang, and Ling Yueh Hu
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DNA Repair ,DNA damage ,DNA repair ,Poly ADP ribose polymerase ,Poly (ADP-Ribose) Polymerase-1 ,lcsh:Medicine ,Gene Expression ,Antineoplastic Agents ,Breast Neoplasms ,Biology ,medicine.disease_cause ,PARP1 ,Cell Line, Tumor ,Neoplasms ,microRNA ,medicine ,Humans ,RNA, Messenger ,lcsh:Science ,Osteosarcoma ,Multidisciplinary ,lcsh:R ,Prognosis ,Molecular biology ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,Drug Resistance, Neoplasm ,Cancer cell ,Cancer research ,lcsh:Q ,Female ,RNA Interference ,Poly(ADP-ribose) Polymerases ,Homologous recombination ,Carcinogenesis ,Research Article ,Transcription Factors - Abstract
MicroRNAs play critical roles in regulating various physiological processes, including growth and development. Previous studies have shown that microRNA-124 (miR-124) participates not only in regulation of early neurogenesis but also in suppression of tumorigenesis. In the present study, we found that overexpression of miR-124 was associated with reduced DNA repair capacity in cultured cancer cells and increased sensitivity of cells to DNA-damaging anti-tumor drugs, specifically those that cause the formation of DNA strand-breaks (SBs). We then examined which DNA repair–related genes, particularly the genes of SB repair, were regulated by miR-124. Two SB repair–related genes, encoding ATM interactor (ATMIN) and poly (ADP-ribose) polymerase 1 (PARP1), were strongly affected by miR-124 overexpression, by binding of miR-124 to the 3¢-untranslated region of their mRNAs. As a result, the capacity of cells to repair DNA SBs, such as those resulting from homologous recombination, was significantly reduced upon miR-124 overexpression. A particularly important therapeutic implication of this finding is that overexpression of miR-124 enhanced cell sensitivity to multiple DNA-damaging agents via ATMIN- and PARP1-mediated mechanisms. The translational relevance of this role of miR-124 in anti-tumor drug sensitivity is suggested by the finding that increased miR-124 expression correlates with better breast cancer prognosis, specifically in patients receiving chemotherapy. These findings suggest that miR-124 could potentially be used as a therapeutic agent to improve the efficacy of chemotherapy with DNA-damaging agents.
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- 2015
28. A new Child-Turcotte-Pugh class 0 for patients with hepatocellular carcinoma: determinants, prognostic impact and ability to improve the current staging systems
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Chen Wei Chu, Teh Ia Huo, Yi You Chiou, Yun Hsuan Lee, Yi Hsiang Huang, Cheng Yuan Hsia, Chia Yang Hsu, Han-Chieh Lin, Chien Wei Su, and Po Hong Liu
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Male ,medicine.medical_specialty ,Cirrhosis ,Carcinoma, Hepatocellular ,Clinical Research Design ,lcsh:Medicine ,Surgical and Invasive Medical Procedures ,Gastroenterology and Hepatology ,Research and Analysis Methods ,Gastroenterology ,Disease-Free Survival ,Predictive Value of Tests ,Diagnostic Medicine ,Internal medicine ,medicine ,Medicine and Health Sciences ,Humans ,heterocyclic compounds ,Public and Occupational Health ,lcsh:Science ,Hepatic encephalopathy ,Primary Care ,Neoplasm Staging ,Retrospective Studies ,Prothrombin time ,Multidisciplinary ,medicine.diagnostic_test ,Proportional hazards model ,business.industry ,Hazard ratio ,lcsh:R ,Liver Neoplasms ,medicine.disease ,Surgery ,Survival Rate ,Health Care ,Oncology ,Research Design ,Hepatocellular carcinoma ,lcsh:Q ,Female ,Liver function ,Liver cancer ,business ,Research Article - Abstract
Background/Aim Majority of patients with hepatocellular carcinoma (HCC) belonged to Child-Turcotte-Pugh (CTP) class A. We aimed to identify a new class of patients with very well-preserved liver function and analyze its impact on outcome prediction, tumor staging and treatment allocation. Methods A total of 2654 HCC patients were retrospectively analyzed. The prognostic ability was compared by the Akaike information criterion (AIC). Results The CTP class 0 was defined by fulfilling all criteria of albumin ≧4 g/dL, bilirubin ≦0.8 mg/dL, prothrombin time prolongation
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- 2014
29. Expression of GATA3 in MDA-MB-231 Triple-negative Breast Cancer Cells Induces a Growth Inhibitory Response to TGFß
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Hosein Kouros-Mehr, Olga Aprelikova, Isabel Chu, Lara H. El Touny, Jeffrey E. Green, and Wei-Chu Lai
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Transcription, Genetic ,Receptor, ErbB-2 ,lcsh:Medicine ,Bone Morphogenetic Protein 5 ,medicine.disease_cause ,Metastasis ,Transforming Growth Factor beta ,Molecular Cell Biology ,Basic Cancer Research ,Breast Tumors ,lcsh:Science ,Multidisciplinary ,Cell Cycle ,GATA3 ,Obstetrics and Gynecology ,Genomics ,Cell cycle ,Gene Expression Regulation, Neoplastic ,Oncology ,Receptors, Estrogen ,Medicine ,Receptors, Progesterone ,Reprogramming ,Cell Division ,Research Article ,Signal Transduction ,Epithelial-Mesenchymal Transition ,Breast Neoplasms ,GATA3 Transcription Factor ,Biology ,Cell Growth ,Cell Line, Tumor ,Breast Cancer ,medicine ,Genetics ,Cancer Genetics ,Biomarkers, Tumor ,Humans ,Epithelial–mesenchymal transition ,Cell Proliferation ,Cell growth ,lcsh:R ,Cancers and Neoplasms ,Transforming growth factor beta ,medicine.disease ,Immunology ,Cancer research ,biology.protein ,lcsh:Q ,Carcinogenesis - Abstract
Transforming growth factor (ß1TGFß1) can promote proliferation in late stage cancers but acts as a tumor suppressor in normal epithelial cells and in early stage cancers. Although, the TGFß pathway has been shown to play a key role in tumorigenesis and metastasis, only a limited number of models have been developed to understand this process. Here, we present a novel model system to discern this paradoxical role of TGFß1 using the MDA-MB-231 (MB-231) cell line. The MB-231 triple-negative breast cancer cell line has been extensively characterized and has been shown to continue to proliferate and undergo epithelial-to-mesenchymal transition (EMT) upon TGFß1 stimulation. We have previously shown by microarray analysis that expression of GATA3 in MB-231 cells results in reprogramming of these cells from a basal to a luminal subtype associated with a reduction of metastasis and tumorigenesis when implanted as xenografts. We now demonstrate that GATA3 overexpression in these cells results in a reduction of TGFß1 response, reversal of EMT, and most importantly, restoration of sensitivity to the inhibitory effects on proliferation of TGFß1. Microarray analysis revealed that TGFß1 treatment resulted in reduction of several cell cycle effectors in 231-GATA3 cells but not in control cells. Furthermore, our microarray analysis revealed a significant increase of BMP5 in 231-GATA3 cells. We demonstrate that combined treatment of MB-231 control cells with TGFß1 and BMP5 results in a significant reduction of cellular proliferation. Thus, this model offers a means to further investigate potentially novel mechanisms involved in the switch in response to TGFß1 from tumor promoter to tumor suppressor through the reprogramming of a triple-negative breast cancer cell line by the GATA3 transcription factor.
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- 2013
30. Airway epithelial NF-κB activation promotes Mycoplasma pneumoniae clearance in mice
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Maisha Minor, Stephanie Case, Fabienne Gally, Qun Wu, Sean Smith, Di Jiang, Hong Wei Chu, Jyoti Thaikoottathil, and Mark L. Nelson
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Mycoplasma pneumoniae ,Pulmonology ,Clone (cell biology) ,lcsh:Medicine ,medicine.disease_cause ,Mice ,lcsh:Science ,Immune Response ,Cells, Cultured ,0303 health sciences ,Multidisciplinary ,Allergy and Hypersensitivity ,NF-kappa B ,respiratory system ,Innate Immunity ,3. Good health ,medicine.anatomical_structure ,Mucociliary Clearance ,Doxycycline ,Medicine ,Cytokines ,Signal transduction ,Research Article ,Mucociliary clearance ,Mice, Transgenic ,Respiratory Mucosa ,Biology ,Immune Activation ,03 medical and health sciences ,In vivo ,Pneumonia, Mycoplasma ,medicine ,Animals ,Humans ,Immunity to Infections ,030304 developmental biology ,Inflammation ,Lung ,030306 microbiology ,lcsh:R ,Immunity ,Immune Defense ,NFKB1 ,Immunity, Innate ,Asthma ,respiratory tract diseases ,Mice, Inbred C57BL ,Immune System ,Immunology ,Respiratory epithelium ,lcsh:Q ,Clinical Immunology - Abstract
Background/Objective Respiratory infections including atypical bacteria Mycoplasma pneumoniae (Mp) contribute to the pathobiology of asthma and chronic obstructive pulmonary disease (COPD). Mp infection mainly targets airway epithelium and activates various signaling pathways such as nuclear factor κB (NF-κB). We have shown that short palate, lung, and nasal epithelium clone 1 (SPLUNC1) serves as a novel host defense protein and is up-regulated upon Mp infection through NF-κB activation in cultured human and mouse primary airway epithelial cells. However, the in vivo role of airway epithelial NF-κB activation in host defense against Mp infection has not been investigated. In the current study, we investigated the effects of in vivo airway epithelial NF-κB activation on lung Mp clearance and its association with airway epithelial SPLUNC1 expression. Methodology/Main Results Non-antimicrobial tetracycline analog 9-t-butyl doxycycline (9-TB) was initially optimized in mouse primary tracheal epithelial cell culture, and then utilized to induce in vivo airway epithelial specific NF-κB activation in conditional NF-κB transgenic mice (CC10-CAIKKβ) with or without Mp infection. Lung Mp load and inflammation were evaluated, and airway epithelial SPLUNC1 protein was examined by immunohistochemistry. We found that 9-TB treatment in NF-κB transgene positive (Tg+), but not transgene negative (Tg−) mice significantly reduced lung Mp load. Moreover, 9-TB increased airway epithelial SPLUNC1 protein expression in NF-κB Tg+ mice. Conclusion By using the non-antimicrobial 9-TB, our study demonstrates that in vivo airway epithelial NF-κB activation promotes lung bacterial clearance, which is accompanied by increased epithelial SPLUNC1 expression.
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- 2012
31. siPRED: Predicting siRNA Efficacy Using Various Characteristic Methods
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Yen-Wei Chu, Chi-Wei Chen, and Wei-Jie Pan
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Correlation coefficient ,Biophysics ,lcsh:Medicine ,Context (language use) ,Biochemistry ,Pattern Recognition, Automated ,RNA interference ,Molecular cell biology ,Artificial Intelligence ,Linear regression ,Genetics ,Humans ,Gene Silencing ,RNA, Small Interfering ,lcsh:Science ,Biology ,Physics ,Multidisciplinary ,Artificial neural network ,Sequence Analysis, RNA ,Applied Mathematics ,lcsh:R ,Weighting ,Support vector machine ,Nucleic acids ,Pattern recognition (psychology) ,Computer Science ,RNA ,lcsh:Q ,Epigenetics ,Gene expression ,Biological system ,Information Technology ,Energy (signal processing) ,Algorithms ,Mathematics ,Software ,Research Article - Abstract
Small interfering RNA (siRNA) has been used widely to induce gene silencing in cells. To predict the efficacy of an siRNA with respect to inhibition of its target mRNA, we developed a two layer system, siPRED, which is based on various characteristic methods in the first layer and fusion mechanisms in the second layer. Characteristic methods were constructed by support vector regression from three categories of characteristics, namely sequence, features, and rules. Fusion mechanisms considered combinations of characteristic methods in different categories and were implemented by support vector regression and neural networks to yield integrated methods. In siPRED, the prediction of siRNA efficacy through integrated methods was better than through any method that utilized only a single method. Moreover, the weighting of each characteristic method in the context of integrated methods was established by genetic algorithms so that the effect of each characteristic method could be revealed. Using a validation dataset, siPRED performed better than other predictive systems that used the scoring method, neural networks, or linear regression. Finally, siPRED can be improved to achieve a correlation coefficient of 0.777 when the threshold of the whole stacking energy is ≥−34.6 kcal/mol. siPRED is freely available on the web at http://predictor.nchu.edu.tw/siPRED.
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- 2011
32. Impact of cigarette smoke exposure on innate immunity: a Caenorhabditis elegans model
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Min Han, Bifeng Gao, Stephanie R. Case, Rebecca M. Green, Richard J. Martin, Maisha N. Minor, Jonathon G. Keeney, Hong Wei Chu, Scott Alper, Andrew R. Weinberger, and Fabienne Gally
- Subjects
Mycoplasma pneumoniae ,Nicotine ,lcsh:Medicine ,medicine.disease_cause ,Microbiology ,Immune system ,RNA interference ,Immunity ,Smoke ,Tobacco ,medicine ,Gene silencing ,Animals ,Caenorhabditis elegans ,Cotinine ,lcsh:Science ,Multidisciplinary ,Innate immune system ,biology ,Microarray analysis techniques ,lcsh:R ,Genetics and Genomics/Gene Expression ,biology.organism_classification ,Respiratory Medicine/COPD and Allied Disorders ,Immunity, Innate ,Genetics and Genomics/Disease Models ,Immunology ,Models, Animal ,Pseudomonas aeruginosa ,Genetics and Genomics/Gene Discovery ,RNA Interference ,lcsh:Q ,Research Article - Abstract
Background Cigarette smoking is the major cause of chronic obstructive pulmonary disease (COPD) and lung cancer. Respiratory bacterial infections have been shown to be involved in the development of COPD along with impaired airway innate immunity. Methodology/Principal Findings To address the in vivo impact of cigarette smoke (CS) exclusively on host innate defense mechanisms, we took advantage of Caenorhabditis elegans (C. elegans), which has an innate immune system but lacks adaptive immune function. Pseudomonas aeruginosa (PA) clearance from intestines of C. elegans was dampened by CS. Microarray analysis identified 6 candidate genes with a 2-fold or greater reduction after CS exposure, that have a human orthologue, and that may participate in innate immunity. To confirm a role of CS-down-regulated genes in the innate immune response to PA, RNA interference (RNAi) by feeding was carried out in C. elegans to inhibit the gene of interest, followed by PA infection to determine if the gene affected innate immunity. Inhibition of lbp-7, which encodes a lipid binding protein, resulted in increased levels of intestinal PA. Primary human bronchial epithelial cells were shown to express mRNA of human Fatty Acid Binding Protein 5 (FABP-5), the human orthologue of lpb-7. Interestingly, FABP-5 mRNA levels from human smokers with COPD were significantly lower (p = 0.036) than those from smokers without COPD. Furthermore, FABP-5 mRNA levels were up-regulated (7-fold) after bacterial (i.e., Mycoplasma pneumoniae) infection in primary human bronchial epithelial cell culture (air-liquid interface culture). Conclusions Our results suggest that the C. elegans model offers a novel in vivo approach to specifically study innate immune deficiencies resulting from exposure to cigarette smoke, and that results from the nematode may provide insight into human airway epithelial cell biology and cigarette smoke exposure.
- Published
- 2009
33. Expression of GATA3 in MDA-MB-231 Triple-negative Breast Cancer Cells Induces a Growth Inhibitory Response to TGFß
- Author
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Chu, Isabel M., primary, Lai, Wei-Chu, additional, Aprelikova, Olga, additional, El Touny, Lara H., additional, Kouros-Mehr, Hosein, additional, and Green, Jeffrey E., additional
- Published
- 2013
- Full Text
- View/download PDF
34. Cigarette Smoke Decreases Airway Epithelial FABP5 Expression and Promotes Pseudomonas aeruginosa Infection.
- Author
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Gally, Fabienne, Hong Wei Chu, and Bowler, Russell P.
- Subjects
SMOKING ,OBSTRUCTIVE lung diseases ,AIRWAY (Anatomy) ,EPITHELIAL cells ,INFLAMMATION ,BACTERIAL diseases ,MEDICAL care costs - Abstract
Cigarette smoking is the primary cause of Chronic Obstructive Pulmonary Disease (COPD), which is characterized by chronic inflammation of the airways and destruction of lung parenchyma. Repeated and sustained bacterial infections are clearly linked to disease pathogenesis (e.g., exacerbations) and a huge burden on health care costs. The airway epithelium constitutes the first line of host defense against infection and our previous study indicated that Fatty Acid Binding Protein 5 (FABP5) is down regulated in airway epithelial cells of smokers with COPD as compared to smokers without COPD. We hypothesized that cigarette smoke (CS) exposure down regulates FABP5, thus, contributing to a more sustained inflammation in response to bacterial infection. In this report, we show that FABP5 is increased following bacterial infection but decreased following CS exposure of primary normal human bronchial epithelial (NHBE) cells. The goal of this study was to address FABP5 function by knocking down or overexpressing FABP5 in primary NHBE cells exposed to CS. Our data indicate that FABP5 down regulation results in increased P. aeruginosa bacterial load and inflammatory cytokine levels (e.g., IL-8) and decreased expression of the anti-bacterial peptide, β defensin-2. On the contrary, FABP5 overexpression exerts a protective function in airway epithelial cells against P. aeruginosa infection by limiting the production of IL-8 and increasing the expression of β defensin-2. Our study indicates that FABP5 exerts immunomodulatory functions in the airway epithelium against CS exposure and subsequent bacterial infection through its modulation of the nuclear receptor peroxisome proliferator-activated receptor (PPAR)-γ activity. These findings support the development of FABP5/PPAR-γ-targeted therapeutic approach to prevent airway inflammation by restoring antimicrobial immunity during COPD exacerbations. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
35. Airway Epithelial NF-κB Activation Promotes Mycoplasma pneumoniae Clearance in Mice.
- Author
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Di Jiang, Mark L. Nelson, Fabienne Gally, Sean Smith, Qun Wu, Maisha Minor, Stephanie Case, Jyoti Thaikoottathil, and Hong Wei Chu
- Subjects
EPITHELIAL cells ,OBSTRUCTIVE lung diseases ,MYCOPLASMA pneumoniae infections ,IMMUNOHISTOCHEMISTRY ,MICE - Abstract
Background/Objective: Respiratory infections including atypical bacteria Mycoplasma pneumoniae (Mp) contribute to the pathobiology of asthma and chronic obstructive pulmonary disease (COPD). Mp infection mainly targets airway epithelium and activates various signaling pathways such as nuclear factor κB (NF-κB). We have shown that short palate, lung, and nasal epithelium clone 1 (SPLUNC1) serves as a novel host defense protein and is up-regulated upon Mp infection through NF-κB activation in cultured human and mouse primary airway epithelial cells. However, the in vivo role of airway epithelial NF-κB activation in host defense against Mp infection has not been investigated. In the current study, we investigated the effects of in vivo airway epithelial NF-κB activation on lung Mp clearance and its association with airway epithelial SPLUNC1 expression. Methodology/Main Results: Non-antimicrobial tetracycline analog 9-t-butyl doxycycline (9-TB) was initially optimized in mouse primary tracheal epithelial cell culture, and then utilized to induce in vivo airway epithelial specific NF-κB activation in conditional NF-κB transgenic mice (CC10-
CA IKKβ) with or without Mp infection. Lung Mp load and inflammation were evaluated, and airway epithelial SPLUNC1 protein was examined by immunohistochemistry. We found that 9-TB treatment in NF-κB transgene positive (Tg+), but not transgene negative (Tg-) mice significantly reduced lung Mp load. Moreover, 9-TB increased airway epithelial SPLUNC1 protein expression in NF-κB Tg+ mice. Conclusion: By using the non-antimicrobial 9-TB, our study demonstrates that in vivo airway epithelial NF-κB activation promotes lung bacterial clearance, which is accompanied by increased epithelial SPLUNC1 expression. [ABSTRACT FROM AUTHOR]- Published
- 2012
- Full Text
- View/download PDF
36. Impact of Cigarette Smoke Exposure on Innate Immunity: A Caenorhabditis elegans Model.
- Author
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Green, Rebecca M., Gally, Fabienne, Keeney, Jonathon G., Alper, Scott, Gao, Bifeng, Han, Min, Martin, Richard J., Weinberger, Andrew R., Case, Stephanie R., Minor, Maisha N., and Hong Wei Chu
- Subjects
CIGARETTE smoke ,IMMUNITY ,CAENORHABDITIS elegans ,CIGARETTE smokers ,OBSTRUCTIVE lung diseases ,BACTERIAL diseases ,IMMUNE system ,PSEUDOMONAS aeruginosa ,RNA ,MESSENGER RNA - Abstract
Background: Cigarette smoking is the major cause of chronic obstructive pulmonary disease (COPD) and lung cancer. Respiratory bacterial infections have been shown to be involved in the development of COPD along with impaired airway innate immunity. Methodology/Principal Findings: To address the in vivo impact of cigarette smoke (CS) exclusively on host innate defense mechanisms, we took advantage of Caenorhabditis elegans (C. elegans), which has an innate immune system but lacks adaptive immune function. Pseudomonas aeruginosa (PA) clearance from intestines of C. elegans was dampened by CS. Microarray analysis identified 6 candidate genes with a 2-fold or greater reduction after CS exposure, that have a human orthologue, and that may participate in innate immunity. To confirm a role of CS-down-regulated genes in the innate immune response to PA, RNA interference (RNAi) by feeding was carried out in C. elegans to inhibit the gene of interest, followed by PA infection to determine if the gene affected innate immunity. Inhibition of lbp-7, which encodes a lipid binding protein, resulted in increased levels of intestinal PA. Primary human bronchial epithelial cells were shown to express mRNA of human Fatty Acid Binding Protein 5 (FABP-5), the human orthologue of lpb-7. Interestingly, FABP-5 mRNA levels from human smokers with COPD were significantly lower (p = 0.036) than those from smokers without COPD. Furthermore, FABP-5 mRNA levels were up-regulated (7-fold) after bacterial (i.e., Mycoplasma pneumoniae) infection in primary human bronchial epithelial cell culture (air-liquid interface culture). Conclusions: Our results suggest that the C. elegans model offers a novel in vivo approach to specifically study innate immune deficiencies resulting from exposure to cigarette smoke, and that results from the nematode may provide insight into human airway epithelial cell biology and cigarette smoke exposure. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
37. dBMHCC: A comprehensive hepatocellular carcinoma (HCC) biomarker database provides a reliable prediction system for novel HCC phosphorylated biomarkers.
- Author
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Yen-Wei Chu, Ching-Hsuan Chien, Mei-I Sung, Chi-Wei Chen, and Yu-Ting Chen
- Subjects
Medicine ,Science - Abstract
Hepatocellular carcinoma (HCC), which is associated with an absence of obvious symptoms and poor prognosis, is the second leading cause of cancer death worldwide. Genome-wide molecular biology studies should provide biological insights into HCC development. Based on the importance of phosphorylation for signal transduction, several protein kinase inhibitors have been developed that improve the survival of cancer patients. However, a comprehensive database of HCC-related phosphorylated biomarkers (HCCPMs) and novel HCCPMs prediction platform has been lacking. We have thus constructed the dBMHCC databases to provide expression profiles, phosphorylation and drug information, and evidence type; gathered information on HCC-related pathways and their involved genes as candidate HCC biomarkers; and established a system for evaluating protein phosphorylation and HCC-related biomarkers to improve the reliability of biomarker prediction. The resulting dBMHCC contains 611 notable HCC-related genes, 234 HCC-related pathways, 17 phosphorylation-related motifs and their 255 corresponding protein kinases, 5955 HCC biomarkers, and 1077 predicted HCCPMs. Methionine adenosyltransferase 2B (MAT2B) and acireductone dioxygenase 1 (ADI1), which regulate HCC development and hepatitis C virus infection, respectively, were among the top 10 HCCPMs predicted by dBMHCC. Platelet-derived growth factor receptor alpha (PDGFRA), which had the highest evaluation score, was identified as the target of one HCC drug (Regorafenib), five cancer drugs, and four non-cancer drugs. dBMHCC is an open resource for HCC phosphorylated biomarkers, which supports researchers investigating the development of HCC and designing novel diagnosis methods and drug treatments. Database URL: http://predictor.nchu.edu.tw/dBMHCC.
- Published
- 2020
- Full Text
- View/download PDF
38. IL-13 induces periostin and eotaxin expression in human primary alveolar epithelial cells: Comparison with paired airway epithelial cells.
- Author
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Yoko Ito, Reem Al Mubarak, Nicole Roberts, Kelly Correll, William Janssen, James Finigan, Rangnath Mishra, and Hong Wei Chu
- Subjects
Medicine ,Science - Abstract
Alveolar epithelial cells are critical to the pathogenesis of pulmonary inflammation and fibrosis, which are associated with overexpression of type 2 cytokine IL-13. IL-13 is known to induce the production of profibrotic (e.g., periostin) and pro-inflammatory (e.g., eotaxin-3) mediators in human airway epithelial cells, but it remains unclear if human primary alveolar epithelial cells increase periostin and eotaxin expression following IL-13 stimulation. The goals of this study are to determine if alveolar epithelial cells increase periostin and eotaxin expression upon IL-13 stimulation, and if alveolar and airway epithelial cells from the same subjects have similar responses to IL-13. Paired alveolar and airway epithelial cells were isolated from donors without any lung disease, and cultured under submerged or air-liquid interface conditions with or without IL-13. Up-regulation of periostin protein and mRNA was observed in IL-13-stimulated alveolar epithelial cells, which was comparable to that in IL-13-stimulated paired airway epithelial cells. IL-13 also increased eotaxin-3 expression in alveolar epithelial cells, but the level of eotaxin mRNA was lower in alveolar epithelial cells than in airway epithelial cells. Our findings demonstrate that human alveolar epithelial cells are able to produce periostin and eotaxin in responses to IL-13 stimulation. This study suggests the need to further determine the contribution of alveolar epithelial cell-derived mediators to pulmonary fibrosis.
- Published
- 2018
- Full Text
- View/download PDF
39. MUC18 Regulates Lung Rhinovirus Infection and Inflammation.
- Author
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Reena Berman, Di Jiang, Qun Wu, Connor R Stevenson, Niccolette R Schaefer, and Hong Wei Chu
- Subjects
Medicine ,Science - Abstract
MUC18 is upregulated in the lungs of asthma and COPD patients. It has been shown to have pro-inflammatory functions in cultured human airway epithelial cells during viral infections and in mice during lung bacterial infections. However, the in vivo role of MUC18 in the context of viral infections remains poorly understood. The goal of this study is to define the in vivo function of MUC18 during respiratory rhinovirus infection.Muc18 wild-type (WT) and knockout (KO) mice were infected with human rhinovirus 1B (HRV-1B) and sacrificed after 1 day to determine the inflammatory and antiviral responses. To examine the direct effects of Muc18 on viral infection, tracheal epithelial cells isolated from WT and KO mice were grown under air-liquid interface and infected with HRV-1B. Finally, siRNA mediated knockdown of MUC18 was performed in human airway epithelial cells (AECs) to define the impact of MUC18 on human airway response to HRV-1B.Both viral load and neutrophilic inflammation were significantly decreased in Muc18 KO mice compared to WT mice. In the in vitro setting, viral load was significantly lower and antiviral gene expression was higher in airway epithelial cells of Muc18 KO mice than the WT mice. Furthermore, in MUC18 knockdown human AECs, viral load was decreased and antiviral gene expression was increased compared to controls.Our study is the first to demonstrate MUC18's pro-inflammatory and pro-viral function in an in vivo mouse model of rhinovirus infection.
- Published
- 2016
- Full Text
- View/download PDF
40. The Effect of MicroRNA-124 Overexpression on Anti-Tumor Drug Sensitivity.
- Author
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Shiau-Mei Chen, Wen-Cheng Chou, Ling-Yueh Hu, Chia-Ni Hsiung, Hou-Wei Chu, Yuan-Ling Huang, Huan-Ming Hsu, Jyh-Cherng Yu, and Chen-Yang Shen
- Subjects
Medicine ,Science - Abstract
MicroRNAs play critical roles in regulating various physiological processes, including growth and development. Previous studies have shown that microRNA-124 (miR-124) participates not only in regulation of early neurogenesis but also in suppression of tumorigenesis. In the present study, we found that overexpression of miR-124 was associated with reduced DNA repair capacity in cultured cancer cells and increased sensitivity of cells to DNA-damaging anti-tumor drugs, specifically those that cause the formation of DNA strand-breaks (SBs). We then examined which DNA repair-related genes, particularly the genes of SB repair, were regulated by miR-124. Two SB repair-related genes, encoding ATM interactor (ATMIN) and poly (ADP-ribose) polymerase 1 (PARP1), were strongly affected by miR-124 overexpression, by binding of miR-124 to the 3¢-untranslated region of their mRNAs. As a result, the capacity of cells to repair DNA SBs, such as those resulting from homologous recombination, was significantly reduced upon miR-124 overexpression. A particularly important therapeutic implication of this finding is that overexpression of miR-124 enhanced cell sensitivity to multiple DNA-damaging agents via ATMIN- and PARP1-mediated mechanisms. The translational relevance of this role of miR-124 in anti-tumor drug sensitivity is suggested by the finding that increased miR-124 expression correlates with better breast cancer prognosis, specifically in patients receiving chemotherapy. These findings suggest that miR-124 could potentially be used as a therapeutic agent to improve the efficacy of chemotherapy with DNA-damaging agents.
- Published
- 2015
- Full Text
- View/download PDF
41. Therapeutic Effects of α1-Antitrypsin on Psedumonas aeruginosa Infection in ENaC Transgenic Mice.
- Author
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David P Nichols, Di Jiang, Carrie Happoldt, Reena Berman, and Hong Wei Chu
- Subjects
Medicine ,Science - Abstract
Cystic fibrosis (CF) is a genetic disease with many airway pathological features, including aberrant epithelial sodium channel (ENaC) function, persistent Pseudomonas aeruginosa (PA) infection and neutrophil-dominant inflammation. PA infection in CF airways is difficult to treat due to antibiotic resistance and other factors. Recently, α1-antitrypsin (A1AT) have been shown to be effective to reduce CF airway PA infection. However, there is a dearth of studies about the mechanisms underlying A1AT's therapeutic effects. The goal of our study is to provide an animal model of A1AT therapy in CF lungs. ENaC transgenic mice with PA infection were used as a CF-like model. Mice were intratracheally treated with PA or saline (control) in a fibrin plug. Two hours after PA infection, aerosolized A1AT were delivered to mouse lungs once daily. At day 1 and day 3 post PA infection, lung inflammation, PA load as well as host defence protein short palate, lung, and nasal epithelium clone 1 (SPLUNC1) were measured. At day 1 post PA infection when A1AT was delivered once to ENaC transgenic mouse lungs, A1AT did not reduce lung inflammation (e.g., neutrophils) and PA load. However, at day 3 post PA infection when ENaC transgenic mice received three repeated A1AT treatments, a significant decrease in airspace inflammation and PA load was observed. Although A1AT prevented the loss of SPLUNC1 in bronchoalveolar lavage fluid of PA-infected wild-type mice, it did not restore SPLUNC1 levels in ENaC transgenic mice. Our current study has provided a valid and quick A1AT therapeutic model in CF-like lungs that may serve as a platform for future mechanistic studies about how A1AT exerts beneficial effects in human CF patients.
- Published
- 2015
- Full Text
- View/download PDF
42. Impact of cigarette smoke exposure on innate immunity: a Caenorhabditis elegans model.
- Author
-
Rebecca M Green, Fabienne Gally, Jonathon G Keeney, Scott Alper, Bifeng Gao, Min Han, Richard J Martin, Andrew R Weinberger, Stephanie R Case, Maisha N Minor, and Hong Wei Chu
- Subjects
Medicine ,Science - Abstract
BACKGROUND: Cigarette smoking is the major cause of chronic obstructive pulmonary disease (COPD) and lung cancer. Respiratory bacterial infections have been shown to be involved in the development of COPD along with impaired airway innate immunity. METHODOLOGY/PRINCIPAL FINDINGS: To address the in vivo impact of cigarette smoke (CS) exclusively on host innate defense mechanisms, we took advantage of Caenorhabditis elegans (C. elegans), which has an innate immune system but lacks adaptive immune function. Pseudomonas aeruginosa (PA) clearance from intestines of C. elegans was dampened by CS. Microarray analysis identified 6 candidate genes with a 2-fold or greater reduction after CS exposure, that have a human orthologue, and that may participate in innate immunity. To confirm a role of CS-down-regulated genes in the innate immune response to PA, RNA interference (RNAi) by feeding was carried out in C. elegans to inhibit the gene of interest, followed by PA infection to determine if the gene affected innate immunity. Inhibition of lbp-7, which encodes a lipid binding protein, resulted in increased levels of intestinal PA. Primary human bronchial epithelial cells were shown to express mRNA of human Fatty Acid Binding Protein 5 (FABP-5), the human orthologue of lpb-7. Interestingly, FABP-5 mRNA levels from human smokers with COPD were significantly lower (p = 0.036) than those from smokers without COPD. Furthermore, FABP-5 mRNA levels were up-regulated (7-fold) after bacterial (i.e., Mycoplasma pneumoniae) infection in primary human bronchial epithelial cell culture (air-liquid interface culture). CONCLUSIONS: Our results suggest that the C. elegans model offers a novel in vivo approach to specifically study innate immune deficiencies resulting from exposure to cigarette smoke, and that results from the nematode may provide insight into human airway epithelial cell biology and cigarette smoke exposure.
- Published
- 2009
- Full Text
- View/download PDF
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