25 results on '"Sam, H."'
Search Results
2. Implication for Functions of the Ectopic Adipocyte Copper Amine Oxidase (AOC3) from Purified Enzyme and Cell-Based Kinetic Studies
- Author
-
Shen, Sam H, Wertz, Diana L, and Klinman, Judith P
- Subjects
Biochemistry and Cell Biology ,Biological Sciences ,Diabetes ,Development of treatments and therapeutic interventions ,5.1 Pharmaceuticals ,3T3-L1 Cells ,Adipocytes ,Amine Oxidase (Copper-Containing) ,Animals ,Bacteria ,Bacterial Physiological Phenomena ,Cell Adhesion Molecules ,Cells ,Cultured ,Drosophila ,Enzyme Activation ,Gene Expression Regulation ,Enzymologic ,Humans ,Kinetics ,Mice ,Obesity ,Permeability ,Transfection ,General Science & Technology - Abstract
AOC3 is highly expressed in adipocytes and smooth muscle cells, but its function in these cells is currently unknown. The in vivo substrate(s) of AOC3 is/are also unknown, but could provide an invaluable clue to the enzyme's function. Expression of untagged, soluble human AOC3 in insect cells provides a relatively simple means of obtaining pure enzyme. Characterization of enzyme indicates a 6% titer for the active site 2,4,5-trihydroxyphenylalanine quinone (TPQ) cofactor and corrected k(cat) values as high as 7 s(-1). Substrate kinetic profiling shows that the enzyme accepts a variety of primary amines with different chemical features, including nonphysiological branched-chain and aliphatic amines, with measured k(cat)/K(m) values between 10(2) and 10(4) M(-1) s(-1). K(m)(O(2)) approximates the partial pressure of oxygen found in the interstitial space. Comparison of the properties of purified murine to human enzyme indicates k(cat)/K(m) values that are within 3 to 4-fold, with the exception of methylamine and aminoacetone that are ca. 10-fold more active with human AOC3. With drug development efforts investigating AOC3 as an anti-inflammatory target, these studies suggest that caution is called for when screening the efficacy of inhibitors designed against human enzymes in non-transgenic mouse models. Differentiated murine 3T3-L1 adipocytes show a uniform distribution of AOC3 on the cell surface and whole cell K(m) values that are reasonably close to values measured using purified enzymes. The latter studies support a relevance of the kinetic parameters measured with isolated AOC3 variants to adipocyte function. From our studies, a number of possible substrates with relatively high k(cat)/K(m) have been discovered, including dopamine and cysteamine, which may implicate a role for adipocyte AOC3 in insulin-signaling and fatty acid metabolism, respectively. Finally, the demonstrated AOC3 turnover of primary amines that are non-native to human tissue suggests possible roles for the adipocyte enzyme in subcutaneous bacterial infiltration and obesity.
- Published
- 2012
3. Higher neuron densities in the cerebral cortex and larger cerebellums may limit dive times of delphinids compared to deep-diving toothed whales.
- Author
-
Sam H Ridgway, Robert H Brownson, Kaitlin R Van Alstyne, and Robert A Hauser
- Subjects
Medicine ,Science - Abstract
Since the work of Tower in the 1950s, we have come to expect lower neuron density in the cerebral cortex of larger brains. We studied dolphin brains varying from 783 to 6215g. As expected, average neuron density in four areas of cortex decreased from the smallest to the largest brain. Despite having a lower neuron density than smaller dolphins, the killer whale has more gray matter and more cortical neurons than any mammal, including humans. To begin a study of non-dolphin toothed whales, we measured a 596g brain of a pygmy sperm whale and a 2004g brain of a Cuvier's beaked whale. We compared neuron density of Nissl stained cortex of these two brains with those of the dolphins. Non-dolphin brains had lower neuron densities compared to all of the dolphins, even the 6215g brain. The beaked whale and pygmy sperm whale we studied dive deeper and for much longer periods than the dolphins. For example, the beaked whale may dive for more than an hour, and the pygmy sperm whale more than a half hour. In contrast, the dolphins we studied limit dives to five or 10 minutes. Brain metabolism may be one feature limiting dolphin dives. The brain consumes an oversized share of oxygen available to the body. The most oxygen is used by the cortex and cerebellar gray matter. The dolphins have larger brains, larger cerebellums, and greater numbers of cortex neurons than would be expected given their body size. Smaller brains, smaller cerebellums and fewer cortical neurons potentially allow the beaked whale and pygmy sperm whale to dive longer and deeper than the dolphins. Although more gray matter, more neurons, and a larger cerebellum may limit dolphins to shorter, shallower dives, these features must give them some advantage. For example, they may be able to catch more elusive individual high-calorie prey in the upper ocean.
- Published
- 2019
- Full Text
- View/download PDF
4. Ocean acidification alters early successional coral reef communities and their rates of community metabolism.
- Author
-
Sam H C Noonan, Anna Kluibenschedl, and Katharina E Fabricius
- Subjects
Medicine ,Science - Abstract
Ocean acidification is expected to alter community composition on coral reefs, but its effects on reef community metabolism are poorly understood. Here we document how early successional benthic coral reef communities change in situ along gradients of carbon dioxide (CO2), and the consequences of these changes on rates of community photosynthesis, respiration, and light and dark calcification. Ninety standardised benthic communities were grown on PVC tiles deployed at two shallow-water volcanic CO2 seeps and two adjacent control sites in Papua New Guinea. Along the CO2 gradient, both the upward facing phototrophic and the downward facing cryptic communities changed in their composition. Under ambient CO2, both communities were dominated by calcifying algae, but with increasing CO2 they were gradually replaced by non-calcifying algae (predominantly green filamentous algae, cyanobacteria and macroalgae, which increased from ~30% to ~80% cover). Responses were weaker in the invertebrate communities, however ascidians and tube-forming polychaetes declined with increasing CO2. Differences in the carbonate chemistry explained a far greater amount of change in communities than differences between the two reefs and successional changes from five to 13 months, suggesting community successions are established early and are under strong chemical control. As pH declined from 8.0 to 7.8, rates of gross photosynthesis and dark respiration of the 13-month old reef communities (upper and cryptic surfaces combined) significantly increased by 10% and 20%, respectively, in response to altered community composition. As a consequence, net production remained constant. Light and dark calcification rates both gradually declined by 20%, and low or negative daily net calcification rates were observed at an aragonite saturation state of
- Published
- 2018
- Full Text
- View/download PDF
5. Extensive recoding of dengue virus type 2 specifically reduces replication in primate cells without gain-of-function in Aedes aegypti mosquitoes.
- Author
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Charles B Stauft, Sam H Shen, Yutong Song, Oleksandr Gorbatsevych, Emmanuel Asare, Bruce Futcher, Steffen Mueller, Anne Payne, Matthew Brecher, Laura Kramer, and Eckard Wimmer
- Subjects
Medicine ,Science - Abstract
Dengue virus (DENV), an arthropod-borne ("arbovirus") virus, causes a range of human maladies ranging from self-limiting dengue fever to the life-threatening dengue shock syndrome and proliferates well in two different taxa of the Animal Kingdom, mosquitoes and primates. Mosquitoes and primates show taxonomic group-specific intolerance to certain codon pairs when expressing their genes by translation. This is called "codon pair bias". By necessity, dengue viruses evolved to delicately balance this fundamental difference in their open reading frames (ORFs). We have undone the evolutionarily conserved genomic balance in the DENV2 ORF sequence and specifically shifted the encoding preference away from primates. However, this recoding of DENV2 raised concerns of 'gain-of-function,' namely whether recoding could inadvertently increase fitness for replication in the arthropod vector. Using mosquito cell lines and two strains of Aedes aegypti we did not observe any increase in fitness in DENV2 variants codon pair deoptimized for humans. This ability to disrupt and control DENV2's host preference has great promise towards developing the next generation of synthetic vaccines not only for DENV but for other emerging arboviral pathogens such as chikungunya virus and Zika virus.
- Published
- 2018
- Full Text
- View/download PDF
6. Cumulative Effects of Nutrient Enrichment and Elevated Temperature Compromise the Early Life History Stages of the Coral Acropora tenuis.
- Author
-
Adriana Humanes, Sam H C Noonan, Bette L Willis, Katharina E Fabricius, and Andrew P Negri
- Subjects
Medicine ,Science - Abstract
Inshore coral reefs are experiencing the combined pressures of excess nutrient availability associated with coastal activities and warming seawater temperatures. Both pressures are known to have detrimental effects on the early life history stages of hard corals, but studies of their combined effects on early demographic stages are lacking. We conducted a series of experiments to test the combined effects of nutrient enrichment (three levels) and elevated seawater temperature (up to five levels) on early life history stages of the inshore coral Acropora tenuis, a common species in the Indo-Pacific and Red Sea. Gamete fertilization, larval survivorship and larval settlement were all significantly reduced as temperature increased, but only fertilization was further affected by simultaneous nutrient enrichment. Combined high temperatures and nutrient enrichment affected fertilization in an additive manner, whereas embryo abnormalities increased synergistically. Higher than normal temperatures (32°C) increased coral juvenile growth rates 1.6-fold, but mortality also increased by 50%. The co-occurrence of nutrient enrichment with high temperatures reduced juvenile mortality to 36%, ameliorating temperature stress (antagonistic interaction). Overall, the types of effect (additive vs synergistic or antagonistic) and their magnitude varied among life stages. Gamete and embryo stages were more affected by temperature stress and, in some cases, also by nutrient enrichment than juveniles. The data suggest that coastal runoff events might exacerbate the impacts of warming temperatures on fertilization if these events co-occur during corals spawning. The cumulative impacts of simultaneous exposure to nutrient enrichment and elevated temperatures over all early life history stages increases the likelihood for failure of larval supply and recruitment for this coral species. Our results suggest that improving the water quality of river discharges into coastal areas might help to enhance the thermal tolerances of early life history stages in this common coral species.
- Published
- 2016
- Full Text
- View/download PDF
7. Central pain processing in chronic chemotherapy-induced peripheral neuropathy: a functional magnetic resonance imaging study.
- Author
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Elaine G Boland, Dinesh Selvarajah, Mike Hunter, Yousef Ezaydi, Solomon Tesfaye, Sam H Ahmedzai, John A Snowden, and Iain D Wilkinson
- Subjects
Medicine ,Science - Abstract
Life expectancy in multiple myeloma has significantly increased. However, a high incidence of chemotherapy induced peripheral neuropathy (CIPN) can negatively influence quality of life during this period. This study applied functional magnetic resonance imaging (fMRI) to compare areas associated with central pain processing in patients with multiple myeloma who had chemotherapy induced peripheral neuropathy (MM-CIPN) with those from healthy volunteers (HV). Twenty-four participants (n = 12 MM-CIPN, n = 12 HV) underwent Blood Oxygen Level-Dependent (BOLD) fMRI at 3T whilst noxious heat-pain stimuli were applied to the foot and then thigh. Patients with MM-CIPN demonstrated greater activation during painful stimulation in the precuneus compared to HV (p = 0.014, FWE-corrected). Patients with MM-CIPN exhibited hypo-activation of the right superior frontal gyrus compared to HV (p = 0.031, FWE-corrected). Significant positive correlation existed between the total neuropathy score (reduced version) and activation in the frontal operculum (close to insular cortex) during foot stimulation in patients with MM-CIPN (p = 0.03, FWE-corrected; adjusted R2 = 0.87). Painful stimuli delivered to MM-CIPN patients evoke differential activation of distinct cortical regions, reflecting a unique pattern of central pain processing compared with healthy volunteers. This characteristic activation pattern associated with pain furthers the understanding of the pathophysiology of painful chemotherapy induced peripheral neuropathy. Functional MRI provides a tool for monitoring cerebral changes during anti-cancer and analgesic treatment.
- Published
- 2014
- Full Text
- View/download PDF
8. Symbiodinium community composition in scleractinian corals is not affected by life-long exposure to elevated carbon dioxide.
- Author
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Sam H C Noonan, Katharina E Fabricius, and Craig Humphrey
- Subjects
Medicine ,Science - Abstract
Ocean acidification (OA) is expected to negatively affect coral reefs, however little is known about how OA will change the coral-algal symbiosis on which reefs ultimately depend. This study investigated whether there would be differences in coral Symbiodinium types in response to OA, potentially improving coral performance. We used denaturing gradient gel electrophoresis (DGGE) of the internal transcribed spacer 2 (ITS2) region of ribosomal DNA to investigate the dominant types of Symbiodinium associating with six species of scleractinian coral that were exposed to elevated partial pressures of carbon dioxide (pCO2) in situ from settlement and throughout their lives. The study was conducted at three naturally occurring volcanic CO2 seeps (pCO2 ∼500 to 900 ppm, pHTotal 7.8 - 7.9) and adjacent control areas (pCO2 ∼390 ppm, pHTotal ∼8.0 - 8.05) in Papua New Guinea. The Symbiodinium associated with corals living in an extreme seep site (pCO2 >1000 ppm) were also examined. Ten clade C types and three clade D types dominated the 443 coral samples. Symbiodinium types strongly contrasted between coral species, however, no differences were observed due to CO2 exposure. Within five species, 85 - 95% of samples exhibited the same Symbiodinium type across all sites, with remaining rare types having no patterns attributable to CO2 exposure. The sixth species of coral displayed site specific differences in Symbiodinium types, unrelated to CO2 exposure. Symbiodinium types from the coral inhabiting the extreme CO2 seep site were found commonly throughout the moderate seeps and control areas. Our finding that symbiotic associations did not change in response to CO2 exposure suggest that, within the six coral hosts, none of the investigated 13 clade C and D Symbiodinium types had a selective advantage at high pCO2. Acclimatisation through changing symbiotic association therefore does not seem to be an option for Indo-Pacific corals to deal with future OA.
- Published
- 2013
- Full Text
- View/download PDF
9. Five members of a mixed-sex group of bottlenose dolphins share a stereotyped whistle contour in addition to maintaining their individually distinctive signature whistles
- Author
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Brittany L. Jones, Sam H. Ridgway, Risa Daniels, and Samantha Tufano
- Subjects
Male ,0106 biological sciences ,Sound Spectrography ,Physiology ,Individuality ,Marine and Aquatic Sciences ,Social Sciences ,01 natural sciences ,Ornithology ,Medicine and Health Sciences ,Psychology ,Animal communication ,Mammals ,Gulf of Mexico ,Multidisciplinary ,Animal Behavior ,Physics ,05 social sciences ,Eukaryota ,Bottle-Nosed Dolphin ,Above ground ,Vertebrates ,Physical Sciences ,Medicine ,Female ,Bird Song ,Research Article ,Dolphins ,Science ,Marine Biology ,010603 evolutionary biology ,Gulfs ,Birds ,Marine mammal ,Bodies of water ,Animals ,0501 psychology and cognitive sciences ,050102 behavioral science & comparative psychology ,Marine Mammals ,Social Behavior ,Swimming ,Behavior ,Stereotyping ,Communication ,Biological Locomotion ,business.industry ,Organisms ,Biology and Life Sciences ,Acoustics ,Animal Communication ,Amniotes ,Earth Sciences ,Vocalization, Animal ,business ,Bioacoustics ,Zoology - Abstract
Most commonly, animal communication systems are driven by shared call repertoires, with some individual distinctiveness encoded as a byproduct of voice cues. We provide evidence that bottlenose dolphins produce both individually distinctive whistles, and a shared whistle type. A stereotyped whistle contour (termed the group whistle) is shared by five bottlenose dolphins that have lived, worked, and traveled together for at least 21 years. These five dolphins are members of a group of eight dolphins that work as a specialized team for the Navy Marine Mammal Program. Each dolphin is routinely recorded during periods when an individual is isolated from the others in above ground pools as part of their routine training. Each of the eight dolphins has an individually distinctive signature whistle. In addition, at least five of these dolphins share a distinct non-signature whistle type. This shared whistle contour was produced an average of 22.4% +/- 9.0% of the time during periods in which individuals were isolated. During these isolations the signature whistle was produced an average of 42.9% +/- 11.9% of the time. This is consistent with decades of signature whistle research. A group of 10 naïve observers rated the similarity of the different whistle contours. The observers rated the group whistle contour produced by all five dolphins as highly similar (P < 0.01). Their ratings further showed that the signature whistles of the five dolphins were very different (P < 0.01). These findings were further supported by discriminant function analyses. That said, the shared whistle contours still exhibited individual differences which may allow conspecifics to identify the producer even when a whistle contour is shared among multiple dolphins. This is the first in-depth analysis of a non-signature whistle type shared among multiple conspecifics.
- Published
- 2020
10. Dolphins can maintain vigilant behavior through echolocation for 15 days without interruption or cognitive impairment.
- Author
-
Brian K Branstetter, James J Finneran, Elizabeth A Fletcher, Brian C Weisman, and Sam H Ridgway
- Subjects
Medicine ,Science - Abstract
In dolphins, natural selection has developed unihemispheric sleep where alternating hemispheres of their brain stay awake. This allows dolphins to maintain consciousness in response to respiratory demands of the ocean. Unihemispheric sleep may also allow dolphins to maintain vigilant states over long periods of time. Because of the relatively poor visibility in the ocean, dolphins use echolocation to interrogate their environment. During echolocation, dolphin produce clicks and listen to returning echoes to determine the location and identity of objects. The extent to which individual dolphins are able to maintain continuous vigilance through this active sense is unknown. Here we show that dolphins may continuously echolocate and accurately report the presence of targets for at least 15 days without interruption. During a total of three sessions, each lasting five days, two dolphins maintained echolocation behaviors while successfully detecting and reporting targets. Overall performance was between 75 to 86% correct for one dolphin and 97 to 99% correct for a second dolphin. Both animals demonstrated diel patterns in echolocation behavior. A 15-day testing session with one dolphin resulted in near perfect performance with no significant decrement over time. Our results demonstrate that dolphins can continuously monitor their environment and maintain long-term vigilant behavior through echolocation.
- Published
- 2012
- Full Text
- View/download PDF
11. Implication for functions of the ectopic adipocyte copper amine oxidase (AOC3) from purified enzyme and cell-based kinetic studies.
- Author
-
Sam H Shen, Diana L Wertz, and Judith P Klinman
- Subjects
Medicine ,Science - Abstract
AOC3 is highly expressed in adipocytes and smooth muscle cells, but its function in these cells is currently unknown. The in vivo substrate(s) of AOC3 is/are also unknown, but could provide an invaluable clue to the enzyme's function. Expression of untagged, soluble human AOC3 in insect cells provides a relatively simple means of obtaining pure enzyme. Characterization of enzyme indicates a 6% titer for the active site 2,4,5-trihydroxyphenylalanine quinone (TPQ) cofactor and corrected k(cat) values as high as 7 s(-1). Substrate kinetic profiling shows that the enzyme accepts a variety of primary amines with different chemical features, including nonphysiological branched-chain and aliphatic amines, with measured k(cat)/K(m) values between 10(2) and 10(4) M(-1) s(-1). K(m)(O(2)) approximates the partial pressure of oxygen found in the interstitial space. Comparison of the properties of purified murine to human enzyme indicates k(cat)/K(m) values that are within 3 to 4-fold, with the exception of methylamine and aminoacetone that are ca. 10-fold more active with human AOC3. With drug development efforts investigating AOC3 as an anti-inflammatory target, these studies suggest that caution is called for when screening the efficacy of inhibitors designed against human enzymes in non-transgenic mouse models. Differentiated murine 3T3-L1 adipocytes show a uniform distribution of AOC3 on the cell surface and whole cell K(m) values that are reasonably close to values measured using purified enzymes. The latter studies support a relevance of the kinetic parameters measured with isolated AOC3 variants to adipocyte function. From our studies, a number of possible substrates with relatively high k(cat)/K(m) have been discovered, including dopamine and cysteamine, which may implicate a role for adipocyte AOC3 in insulin-signaling and fatty acid metabolism, respectively. Finally, the demonstrated AOC3 turnover of primary amines that are non-native to human tissue suggests possible roles for the adipocyte enzyme in subcutaneous bacterial infiltration and obesity.
- Published
- 2012
- Full Text
- View/download PDF
12. Higher neuron densities in the cerebral cortex and larger cerebellums may limit dive times of delphinids compared to deep-diving toothed whales
- Author
-
Robert A. Hauser, Robert H. Brownson, Kaitlin R. Van Alstyne, and Sam H. Ridgway
- Subjects
0301 basic medicine ,Central Nervous System ,Cerebellum ,Time Factors ,Physiology ,Diving ,neurons ,Marine and Aquatic Sciences ,Pygmy sperm whale ,Cell Count ,Nervous System ,0302 clinical medicine ,Animal Cells ,Medicine and Health Sciences ,Cerebral Cortex ,Neurons ,Mammals ,Brain Mapping ,Multidisciplinary ,Brain ,Eukaryota ,Killer Whales ,Organ Size ,killer whales ,medicine.anatomical_structure ,Physiological Parameters ,Cerebral cortex ,Vertebrates ,Nissl body ,symbols ,cerebral cortex ,Medicine ,Autopsy ,Cellular Types ,Anatomy ,Research Article ,cerebellum ,Science ,Dolphins ,Zoology ,Marine Biology ,Biology ,03 medical and health sciences ,symbols.namesake ,Beaked whale ,physiological parameters ,biology.animal ,medicine ,Animals ,mammals ,Marine Mammals ,Whale ,Whales ,Organisms ,Biology and Life Sciences ,Cell Biology ,central nervous system ,biology.organism_classification ,030104 developmental biology ,nervous system ,Positron-Emission Tomography ,Cellular Neuroscience ,Amniotes ,Earth Sciences ,Mammal ,Neuron ,Whale, Killer ,human activities ,dolphins ,030217 neurology & neurosurgery ,Neuroscience - Abstract
Since the work of Tower in the 1950s, we have come to expect lower neuron density in the cerebral cortex of larger brains. We studied dolphin brains varying from 783 to 6215g. As expected, average neuron density in four areas of cortex decreased from the smallest to the largest brain. Despite having a lower neuron density than smaller dolphins, the killer whale has more gray matter and more cortical neurons than any mammal, including humans. To begin a study of non-dolphin toothed whales, we measured a 596g brain of a pygmy sperm whale and a 2004g brain of a Cuvier's beaked whale. We compared neuron density of Nissl stained cortex of these two brains with those of the dolphins. Non-dolphin brains had lower neuron densities compared to all of the dolphins, even the 6215g brain. The beaked whale and pygmy sperm whale we studied dive deeper and for much longer periods than the dolphins. For example, the beaked whale may dive for more than an hour, and the pygmy sperm whale more than a half hour. In contrast, the dolphins we studied limit dives to five or 10 minutes. Brain metabolism may be one feature limiting dolphin dives. The brain consumes an oversized share of oxygen available to the body. The most oxygen is used by the cortex and cerebellar gray matter. The dolphins have larger brains, larger cerebellums, and greater numbers of cortex neurons than would be expected given their body size. Smaller brains, smaller cerebellums and fewer cortical neurons potentially allow the beaked whale and pygmy sperm whale to dive longer and deeper than the dolphins. Although more gray matter, more neurons, and a larger cerebellum may limit dolphins to shorter, shallower dives, these features must give them some advantage. For example, they may be able to catch more elusive individual high-calorie prey in the upper ocean.
- Published
- 2019
13. Effects of variability in daily light integrals on the photophysiology of the corals Pachyseris speciosa and Acropora millepora
- Author
-
Sam H. C. Noonan, Katharina E. Fabricius, Stephanie Diperna, and Mia O. Hoogenboom
- Subjects
0106 biological sciences ,Pigments ,Chlorophyll ,Chloroplasts ,010504 meteorology & atmospheric sciences ,Light ,Coral ,Acclimatization ,lcsh:Medicine ,Marine and Aquatic Sciences ,Plant Science ,01 natural sciences ,Biochemistry ,chemistry.chemical_compound ,Acropora millepora ,Photosynthesis ,lcsh:Science ,Multidisciplinary ,geography.geographical_feature_category ,Phototroph ,Ecology ,Coral Reefs ,Plant Biochemistry ,Physics ,Electromagnetic Radiation ,Coral reef ,Anthozoa ,Circadian Rhythm ,Corals ,Physical Sciences ,Sunlight ,Cellular Structures and Organelles ,Cellular Types ,Elementary Particles ,Research Article ,Plant Cell Biology ,Materials Science ,Marine Biology ,Biology ,Plant Cells ,Animals ,Particle Physics ,Reef ,Materials by Attribute ,0105 earth and related environmental sciences ,geography ,Photons ,Organic Pigments ,010604 marine biology & hydrobiology ,lcsh:R ,fungi ,Biology and Life Sciences ,Cell Biology ,biology.organism_classification ,Carotenoids ,chemistry ,Earth Sciences ,Reefs ,lcsh:Q - Abstract
Phototrophic sessile organisms, such as reef corals, adjust their photosynthetic apparatus to optimize the balance of light capture versus protection in response to variable light availability (photoacclimation). In shallow marine environments, daily light integrals (DLI) can vary several-fold in response to water clarity and clouds. This laboratory study investigated the responses of two coral species to fluctuations in DLI. Corals were exposed to four contrasting DLI treatments: 'high-light' (potentially photoinhibiting conditions, 32 mol photons m-2 d-1), 'low-light' (potentially light-limiting conditions, 6 mol photons m-2 d-1), and two 'variable light' treatments that alternated between high and low conditions every 5 days. In the variable treatments, the shade-tolerant coral Pachyseris speciosa displayed cycles of rapid declines in maximum quantum yield during high-light and subsequent recoveries during low-light, showing photoacclimation at a time scale of 3-5 days. In contrast, the shallow-water coral Acropora millepora showed slow (>20 days) photoacclimation, and minimal changes in photosynthetic yields despite contrasting light exposure. However, growth (change in buoyant weight) in A. millepora was significantly slower under variable light, and even more so under low-light conditions, compared with high-light conditions. The responses of yields in P. speciosa match their preference for low-light environments, but suggest a vulnerability to even short periods of high-light exposure. In contrast, A. millepora had better tolerance of high-light conditions, however its slow photoacclimatory responses limit its growth under low and variable conditions. The study shows contrasting photoacclimatory responses in variable light environments, which is important to identify and understand as many coastal and midshelf reefs are becoming increasingly more turbid, and may experience higher variability in light availability.
- Published
- 2018
14. Ocean acidification alters early successional coral reef communities and their rates of community metabolism
- Author
-
Katharina E. Fabricius, Anna Kluibenschedl, and Sam H. C. Noonan
- Subjects
0106 biological sciences ,Atmospheric Science ,010504 meteorology & atmospheric sciences ,Physiology ,Carbonates ,Marine and Aquatic Sciences ,lcsh:Medicine ,Plant Science ,01 natural sciences ,Biochemistry ,Chlorophyta ,Medicine and Health Sciences ,Photosynthesis ,lcsh:Science ,Multidisciplinary ,geography.geographical_feature_category ,biology ,Ecology ,Coral Reefs ,Plant Biochemistry ,Eukaryota ,Ocean acidification ,Coral reef ,Hydrogen-Ion Concentration ,Plants ,Anthozoa ,Chemistry ,Benthic zone ,Physical Sciences ,geographic locations ,Research Article ,Algae ,Oceans and Seas ,Marine Biology ,Calcification ,Papua New Guinea ,Greenhouse Gases ,Hydrothermal Vents ,Benthos ,Sea Water ,Animals ,Environmental Chemistry ,Ecosystem ,Reef ,0105 earth and related environmental sciences ,geography ,Community ,010604 marine biology & hydrobiology ,Ecology and Environmental Sciences ,fungi ,lcsh:R ,Organisms ,Chemical Compounds ,Biology and Life Sciences ,Aquatic Environments ,Carbon Dioxide ,biology.organism_classification ,Invertebrates ,Marine Environments ,Atmospheric Chemistry ,Earth Sciences ,Reefs ,Calcium ,lcsh:Q ,Physiological Processes ,Animal Distribution - Abstract
Ocean acidification is expected to alter community composition on coral reefs, but its effects on reef community metabolism are poorly understood. Here we document how early successional benthic coral reef communities change in situ along gradients of carbon dioxide (CO2), and the consequences of these changes on rates of community photosynthesis, respiration, and light and dark calcification. Ninety standardised benthic communities were grown on PVC tiles deployed at two shallow-water volcanic CO2 seeps and two adjacent control sites in Papua New Guinea. Along the CO2 gradient, both the upward facing phototrophic and the downward facing cryptic communities changed in their composition. Under ambient CO2, both communities were dominated by calcifying algae, but with increasing CO2 they were gradually replaced by non-calcifying algae (predominantly green filamentous algae, cyanobacteria and macroalgae, which increased from ~30% to ~80% cover). Responses were weaker in the invertebrate communities, however ascidians and tube-forming polychaetes declined with increasing CO2. Differences in the carbonate chemistry explained a far greater amount of change in communities than differences between the two reefs and successional changes from five to 13 months, suggesting community successions are established early and are under strong chemical control. As pH declined from 8.0 to 7.8, rates of gross photosynthesis and dark respiration of the 13-month old reef communities (upper and cryptic surfaces combined) significantly increased by 10% and 20%, respectively, in response to altered community composition. As a consequence, net production remained constant. Light and dark calcification rates both gradually declined by 20%, and low or negative daily net calcification rates were observed at an aragonite saturation state of
- Published
- 2018
15. Extensive recoding of dengue virus type 2 specifically reduces replication in primate cells without gain-of-function in Aedes aegypti mosquitoes
- Author
-
Stauft, Charles B., primary, Shen, Sam H., additional, Song, Yutong, additional, Gorbatsevych, Oleksandr, additional, Asare, Emmanuel, additional, Futcher, Bruce, additional, Mueller, Steffen, additional, Payne, Anne, additional, Brecher, Matthew, additional, Kramer, Laura, additional, and Wimmer, Eckard, additional
- Published
- 2018
- Full Text
- View/download PDF
16. Ocean acidification alters early successional coral reef communities and their rates of community metabolism
- Author
-
Noonan, Sam H. C., primary, Kluibenschedl, Anna, additional, and Fabricius, Katharina E., additional
- Published
- 2018
- Full Text
- View/download PDF
17. Cumulative Effects of Nutrient Enrichment and Elevated Temperature Compromise the Early Life History Stages of the Coral Acropora tenuis
- Author
-
Sam H. C. Noonan, Adriana Humanes, Katharina E. Fabricius, Bette L. Willis, and Andrew P. Negri
- Subjects
0106 biological sciences ,Embryology ,Hot Temperature ,010504 meteorology & atmospheric sciences ,Coral ,ved/biology.organism_classification_rank.species ,Marine and Aquatic Sciences ,lcsh:Medicine ,Stylophora pistillata ,01 natural sciences ,Nutrient ,Larvae ,Water Quality ,lcsh:Science ,Multidisciplinary ,geography.geographical_feature_category ,biology ,Ecology ,Coral Reefs ,Physics ,Cumulative effects ,Classical Mechanics ,Coral reef ,Anthozoa ,Corals ,Physical Sciences ,Mechanical Stress ,Embryo Development ,Research Article ,Marine Biology ,Sea Water ,Juvenile ,Animals ,Acropora tenuis ,0105 earth and related environmental sciences ,geography ,Life Cycle Stages ,Metamorphosis ,ved/biology ,010604 marine biology & hydrobiology ,Embryos ,fungi ,lcsh:R ,Biology and Life Sciences ,biology.organism_classification ,Thermal Stresses ,Fertilization ,Earth Sciences ,Reefs ,lcsh:Q ,Hydrology ,Developmental Biology - Abstract
Inshore coral reefs are experiencing the combined pressures of excess nutrient availability associated with coastal activities and warming seawater temperatures. Both pressures are known to have detrimental effects on the early life history stages of hard corals, but studies of their combined effects on early demographic stages are lacking. We conducted a series of experiments to test the combined effects of nutrient enrichment (three levels) and elevated seawater temperature (up to five levels) on early life history stages of the inshore coral Acropora tenuis, a common species in the Indo-Pacific and Red Sea. Gamete fertilization, larval survivorship and larval settlement were all significantly reduced as temperature increased, but only fertilization was further affected by simultaneous nutrient enrichment. Combined high temperatures and nutrient enrichment affected fertilization in an additive manner, whereas embryo abnormalities increased synergistically. Higher than normal temperatures (32°C) increased coral juvenile growth rates 1.6-fold, but mortality also increased by 50%. The co-occurrence of nutrient enrichment with high temperatures reduced juvenile mortality to 36%, ameliorating temperature stress (antagonistic interaction). Overall, the types of effect (additive vs synergistic or antagonistic) and their magnitude varied among life stages. Gamete and embryo stages were more affected by temperature stress and, in some cases, also by nutrient enrichment than juveniles. The data suggest that coastal runoff events might exacerbate the impacts of warming temperatures on fertilization if these events co-occur during corals spawning. The cumulative impacts of simultaneous exposure to nutrient enrichment and elevated temperatures over all early life history stages increases the likelihood for failure of larval supply and recruitment for this coral species. Our results suggest that improving the water quality of river discharges into coastal areas might help to enhance the thermal tolerances of early life history stages in this common coral species.
- Published
- 2016
18. Extensive recoding of dengue virus type 2 specifically reduces replication in primate cells without gain-of-function in Aedes aegypti mosquitoes
- Author
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Laura D. Kramer, Oleksandr Gorbatsevych, Sam H. Shen, Charles B. Stauft, Eckard Wimmer, Emmanuel Asare, Bruce Futcher, Yutong Song, Anne F. Payne, Matthew Brecher, and Steffen Mueller
- Subjects
RNA viruses ,0301 basic medicine ,Pulmonology ,Cell Lines ,viruses ,lcsh:Medicine ,Disease Vectors ,Dengue virus ,Virus Replication ,Pathology and Laboratory Medicine ,medicine.disease_cause ,Mosquitoes ,Zika virus ,Dengue fever ,Aedes ,Chlorocebus aethiops ,Medicine and Health Sciences ,Chikungunya ,ORFS ,lcsh:Science ,Mammals ,Genetics ,0303 health sciences ,Multidisciplinary ,biology ,Eukaryota ,virus diseases ,3. Good health ,Insects ,Infectious Diseases ,Medical Microbiology ,Viral Pathogens ,Viruses ,Vertebrates ,Biological Cultures ,Pathogens ,Research Article ,Primates ,Arthropoda ,030106 microbiology ,Genome, Viral ,Aedes aegypti ,Aedes Aegypti ,Research and Analysis Methods ,Microbiology ,Arbovirus ,Virus ,Cell Line ,03 medical and health sciences ,Virology ,medicine ,Animals ,Vero Cells ,Microbial Pathogens ,030304 developmental biology ,Flaviviruses ,030306 microbiology ,lcsh:R ,Organisms ,Biology and Life Sciences ,biochemical phenomena, metabolism, and nutrition ,Dengue Virus ,Cell Cultures ,biology.organism_classification ,medicine.disease ,Invertebrates ,Viral Replication ,Insect Vectors ,Species Interactions ,Open reading frame ,030104 developmental biology ,Respiratory Infections ,Amniotes ,lcsh:Q - Abstract
Dengue virus (DENV), an arthropod-borne (“arbovirus”) virus causing a range of human maladies ranging from self-limiting dengue fever to the life-threatening dengue shock syndrome, proliferates well in two different taxa of the Animal Kingdom, mosquitoes and primates. Unexpectedly, mosquitoes and primates have distinct preferences when expressing their genes by translation, e.g. members of these taxa show taxonomic group-specific intolerance to certain codon pairs. This is called “codon pair bias”. By necessity, arboviruses evolved to delicately balance this fundamental difference in their ORFs. Using the mosquito-borne human pathogen DENV we have undone the evolutionarily conserved genomic balance in its ORF sequence and specifically shifted the encoding preference away from primates. However, this recoding of DENV raised concerns of ‘gain-of-function,’ namely whether recoding could inadvertently increase fitness for replication in the arthropod vector. Using mosquito cell cultures and two strains of Aedes aegypti we did not observe any increase in fitness in DENV2 variants codon pair deoptimized for humans. This ability to disrupt and control an arbovirus’s host preference has great promise towards developing the next generation of synthetic vaccines not only for DENV but for other emerging arboviral pathogens such as chikungunya virus and Zika virus.
- Published
- 2018
19. Increased Dietary Intake of Saturated Fatty Acid Heptadecanoic Acid (C17:0) Associated with Decreasing Ferritin and Alleviated Metabolic Syndrome in Dolphins
- Author
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Risa Daniels, Celeste Parry, Kevin P. Carlin, Cynthia R. Smith, Randall S. Wells, Mark S. Baird, Richard Jones, Stephanie Venn-Watson, Sacha Stevenson, Sam H. Ridgway, and Eric D. Jensen
- Subjects
medicine.medical_specialty ,endocrine system ,Saturated fat ,medicine.medical_treatment ,lcsh:Medicine ,Carbohydrate metabolism ,Biology ,Mullet ,chemistry.chemical_compound ,Internal medicine ,medicine ,Animals ,lcsh:Science ,Metabolic Syndrome ,Multidisciplinary ,Dose-Response Relationship, Drug ,Insulin ,Fatty Acids ,lcsh:R ,medicine.disease ,biology.organism_classification ,Dietary Fats ,Bottle-Nosed Dolphin ,Ferritin ,Endocrinology ,chemistry ,Ferritins ,Saturated fatty acid ,biology.protein ,Regression Analysis ,Heptadecanoic acid ,lcsh:Q ,Metabolic syndrome ,Research Article - Abstract
Similar to humans, bottlenose dolphins (Tursiops truncatus) can develop metabolic syndrome and associated high ferritin. While fish and fish-based fatty acids may protect against metabolic syndrome in humans, findings have been inconsistent. To assess potential protective factors against metabolic syndrome related to fish diets, fatty acids were compared between two dolphin populations with higher (n = 30, Group A) and lower (n = 19, Group B) mean insulin (11 ± 12 and 2 ± 5 μIU/ml, respectively; P < 0.0001) and their dietary fish. In addition to higher insulin, triglycerides, and ferritin, Group A had lower percent serum heptadecanoic acid (C17:0) compared to Group B (0.3 ± 0.1 and 1.3 ± 0.4%, respectively; P < 0.0001). Using multivariate stepwise regression, higher percent serum C17:0, a saturated fat found in dairy fat, rye, and some fish, was an independent predictor of lower insulin in dolphins. Capelin, a common dietary fish for Group A, had no detectable C17:0, while pinfish and mullet, common in Group B’s diet, had C17:0 (41 and 67 mg/100g, respectively). When a modified diet adding 25% pinfish and/or mullet was fed to six Group A dolphins over 24 weeks (increasing the average daily dietary C17:0 intake from 400 to 1700 mg), C17:0 serum levels increased, high ferritin decreased, and blood-based metabolic syndrome indices normalized toward reference levels. These effects were not found in four reference dolphins. Further, higher total serum C17:0 was an independent and linear predictor of lower ferritin in dolphins in Group B dolphins. Among off the shelf dairy products tested, butter had the highest C17:0 (423mg/100g); nonfat dairy products had no detectable C17:0. We hypothesize that humans’ movement away from diets with potentially beneficial saturated fatty acid C17:0, including whole fat dairy products, could be a contributor to widespread low C17:0 levels, higher ferritin, and metabolic syndrome.
- Published
- 2015
20. Central pain processing in chronic chemotherapy-induced peripheral neuropathy: a functional magnetic resonance imaging study
- Author
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Dinesh Selvarajah, John A. Snowden, Solomon Tesfaye, Elaine G. Boland, Yousef Ezaydi, Iain D. Wilkinson, Sam H Ahmedzai, and Mike D. Hunter
- Subjects
Male ,Pathology ,Epidemiology ,Cancer Treatment ,Precuneus ,lcsh:Medicine ,Plasma Cell Disorders ,Diagnostic Radiology ,Hematologic Cancers and Related Disorders ,Medicine and Health Sciences ,Clinical Epidemiology ,lcsh:Science ,Multiple myeloma ,Pain Measurement ,Multidisciplinary ,medicine.diagnostic_test ,Radiology and Imaging ,Palliative Care ,Temperature ,Peripheral Nervous System Diseases ,Hematology ,Middle Aged ,Magnetic Resonance Imaging ,medicine.anatomical_structure ,Oncology ,Chemotherapy-induced peripheral neuropathy ,Research Design ,Neuropathic pain ,Cardiology ,Female ,Multiple Myeloma ,Research Article ,medicine.medical_specialty ,Clinical Research Design ,Analgesic ,Pain ,Research and Analysis Methods ,Insular cortex ,Diagnostic Medicine ,Physical Stimulation ,Internal medicine ,medicine ,Humans ,Myelomas and Lymphoproliferative Diseases ,Aged ,business.industry ,lcsh:R ,Cancers and Neoplasms ,medicine.disease ,Neurophysiological Monitoring ,Health Care ,Peripheral neuropathy ,Quality of Life ,lcsh:Q ,business ,Functional magnetic resonance imaging - Abstract
Life expectancy in multiple myeloma has significantly increased. However, a high incidence of chemotherapy induced peripheral neuropathy (CIPN) can negatively influence quality of life during this period. This study applied functional magnetic resonance imaging (fMRI) to compare areas associated with central pain processing in patients with multiple myeloma who had chemotherapy induced peripheral neuropathy (MM-CIPN) with those from healthy volunteers (HV). Twenty-four participants (n = 12 MM-CIPN, n = 12 HV) underwent Blood Oxygen Level-Dependent (BOLD) fMRI at 3T whilst noxious heat-pain stimuli were applied to the foot and then thigh. Patients with MM-CIPN demonstrated greater activation during painful stimulation in the precuneus compared to HV (p = 0.014, FWE-corrected). Patients with MM-CIPN exhibited hypo-activation of the right superior frontal gyrus compared to HV (p = 0.031, FWE-corrected). Significant positive correlation existed between the total neuropathy score (reduced version) and activation in the frontal operculum (close to insular cortex) during foot stimulation in patients with MM-CIPN (p = 0.03, FWE-corrected; adjusted R2 = 0.87). Painful stimuli delivered to MM-CIPN patients evoke differential activation of distinct cortical regions, reflecting a unique pattern of central pain processing compared with healthy volunteers. This characteristic activation pattern associated with pain furthers the understanding of the pathophysiology of painful chemotherapy induced peripheral neuropathy. Functional MRI provides a tool for monitoring cerebral changes during anti-cancer and analgesic treatment.
- Published
- 2014
21. Cumulative Effects of Nutrient Enrichment and Elevated Temperature Compromise the Early Life History Stages of the Coral Acropora tenuis
- Author
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Humanes, Adriana, primary, Noonan, Sam H. C., additional, Willis, Bette L., additional, Fabricius, Katharina E., additional, and Negri, Andrew P., additional
- Published
- 2016
- Full Text
- View/download PDF
22. Central Pain Processing in Chronic Chemotherapy-Induced Peripheral Neuropathy: A Functional Magnetic Resonance Imaging Study
- Author
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Boland, Elaine G., primary, Selvarajah, Dinesh, additional, Hunter, Mike, additional, Ezaydi, Yousef, additional, Tesfaye, Solomon, additional, Ahmedzai, Sam H., additional, Snowden, John A., additional, and Wilkinson, Iain D., additional
- Published
- 2014
- Full Text
- View/download PDF
23. Symbiodinium Community Composition in Scleractinian Corals Is Not Affected by Life-Long Exposure to Elevated Carbon Dioxide
- Author
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Noonan, Sam H. C., primary, Fabricius, Katharina E., additional, and Humphrey, Craig, additional
- Published
- 2013
- Full Text
- View/download PDF
24. Dolphins Can Maintain Vigilant Behavior through Echolocation for 15 Days without Interruption or Cognitive Impairment
- Author
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Branstetter, Brian K., primary, Finneran, James J., additional, Fletcher, Elizabeth A., additional, Weisman, Brian C., additional, and Ridgway, Sam H., additional
- Published
- 2012
- Full Text
- View/download PDF
25. Symbiodinium Community Composition in Scleractinian Corals Is Not Affected by Life-Long Exposure to Elevated Carbon Dioxide
- Author
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Noonan, Sam H. C., Fabricius, Katharina E., and Humphrey, Craig
- Subjects
- *
SYMBIODINIUM , *SCLERACTINIA , *OCEAN acidification , *ANIMAL populations , *GEL electrophoresis , *MOLECULAR genetics , *RIBOSOMAL DNA , *MARINE ecology - Abstract
Ocean acidification (OA) is expected to negatively affect coral reefs, however little is known about how OA will change the coral-algal symbiosis on which reefs ultimately depend. This study investigated whether there would be differences in coral Symbiodinium types in response to OA, potentially improving coral performance. We used denaturing gradient gel electrophoresis (DGGE) of the internal transcribed spacer 2 (ITS2) region of ribosomal DNA to investigate the dominant types of Symbiodinium associating with six species of scleractinian coral that were exposed to elevated partial pressures of carbon dioxide (pCO2) in situ from settlement and throughout their lives. The study was conducted at three naturally occurring volcanic CO2 seeps (pCO2 ∼500 to 900 ppm, pHTotal 7.8 – 7.9) and adjacent control areas (pCO2 ∼390 ppm, pHTotal ∼8.0 – 8.05) in Papua New Guinea. The Symbiodinium associated with corals living in an extreme seep site (pCO2 >1000 ppm) were also examined. Ten clade C types and three clade D types dominated the 443 coral samples. Symbiodinium types strongly contrasted between coral species, however, no differences were observed due to CO2 exposure. Within five species, 85 – 95% of samples exhibited the same Symbiodinium type across all sites, with remaining rare types having no patterns attributable to CO2 exposure. The sixth species of coral displayed site specific differences in Symbiodinium types, unrelated to CO2 exposure. Symbiodinium types from the coral inhabiting the extreme CO2 seep site were found commonly throughout the moderate seeps and control areas. Our finding that symbiotic associations did not change in response to CO2 exposure suggest that, within the six coral hosts, none of the investigated 13 clade C and D Symbiodinium types had a selective advantage at high pCO2. Acclimatisation through changing symbiotic association therefore does not seem to be an option for Indo-Pacific corals to deal with future OA. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
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