3 results on '"Porebski BT"'
Search Results
2. Molecular basis for a new bovine model of Niemann-Pick type C disease.
- Author
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Woolley SA, Tsimnadis ER, Lenghaus C, Healy PJ, Walker K, Morton A, Khatkar MS, Elliott A, Kaya E, Hoerner C, Priestman DA, Shepherd D, Platt FM, Porebski BT, Willet CE, O'Rourke BA, and Tammen I
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Cattle, Cells, Cultured, Cholera Toxin metabolism, Cholesterol metabolism, DNA, Complementary genetics, Disease Models, Animal, Fibroblasts pathology, G(M1) Ganglioside metabolism, Homozygote, Mutation genetics, Niemann-Pick C1 Protein chemistry, Niemann-Pick C1 Protein genetics, Phenotype, Polymorphism, Single Nucleotide genetics, Polysaccharides metabolism, RNA, Messenger genetics, RNA, Messenger metabolism, Niemann-Pick Disease, Type C genetics, Niemann-Pick Disease, Type C pathology
- Abstract
Niemann-Pick type C disease is a lysosomal storage disease affecting primarily the nervous system that results in premature death. Here we present the first report and investigation of Niemann-Pick type C disease in Australian Angus/Angus-cross calves. After a preliminary diagnosis of Niemann-Pick type C, samples from two affected calves and two obligate carriers were analysed using single nucleotide polymorphism genotyping and homozygosity mapping, and NPC1 was considered as a positional candidate gene. A likely causal missense variant on chromosome 24 in the NPC1 gene (NM_174758.2:c.2969C>G) was identified by Sanger sequencing of cDNA. SIFT analysis, protein alignment and protein modelling predicted the variant to be deleterious to protein function. Segregation of the variant with disease was confirmed in two additional affected calves and two obligate carrier dams. Genotyping of 403 animals from the original herd identified an estimated allele frequency of 3.5%. The Niemann-Pick type C phenotype was additionally confirmed via biochemical analysis of Lysotracker Green, cholesterol, sphingosine and glycosphingolipids in fibroblast cell cultures originating from two affected calves. The identification of a novel missense variant for Niemann-Pick type C disease in Angus/Angus-cross cattle will enable improved breeding and management of this disease in at-risk populations. The results from this study offer a unique opportunity to further the knowledge of human Niemann-Pick type C disease through the potential availability of a bovine model of disease., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2020
- Full Text
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3. Modelling of Thyroid Peroxidase Reveals Insights into Its Enzyme Function and Autoantigenicity.
- Author
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Le SN, Porebski BT, McCoey J, Fodor J, Riley B, Godlewska M, Góra M, Czarnocka B, Banga JP, Hoke DE, Kass I, and Buckle AM
- Subjects
- Amino Acid Sequence, Autoantigens chemistry, Cell Membrane enzymology, Enzyme Stability, Extracellular Space enzymology, Humans, Iodide Peroxidase chemistry, Iron-Binding Proteins chemistry, Molecular Sequence Data, Protein Multimerization, Protein Structure, Quaternary, Protein Structure, Tertiary, Thermodynamics, Autoantigens immunology, Autoantigens metabolism, Iodide Peroxidase immunology, Iodide Peroxidase metabolism, Iron-Binding Proteins immunology, Iron-Binding Proteins metabolism, Molecular Dynamics Simulation
- Abstract
Thyroid peroxidase (TPO) catalyses the biosynthesis of thyroid hormones and is a major autoantigen in Hashimoto's disease--the most common organ-specific autoimmune disease. Epitope mapping studies have shown that the autoimmune response to TPO is directed mainly at two surface regions on the molecule: immunodominant regions A and B (IDR-A, and IDR-B). TPO has been a major target for structural studies for over 20 years; however, to date, the structure of TPO remains to be determined. We have used a molecular modelling approach to investigate plausible modes of TPO structure and dimer organisation. Sequence features of the C-terminus are consistent with a coiled-coil dimerization motif that most likely anchors the TPO dimer in the apical membrane of thyroid follicular cells. Two contrasting models of TPO were produced, differing in the orientation and exposure of their active sites relative to the membrane. Both models are equally plausible based upon the known enzymatic function of TPO. The "trans" model places IDR-B on the membrane-facing side of the myeloperoxidase (MPO)-like domain, potentially hindering access of autoantibodies, necessitating considerable conformational change, and perhaps even dissociation of the dimer into monomers. IDR-A spans MPO- and CCP-like domains and is relatively fragmented compared to IDR-B, therefore most likely requiring domain rearrangements in order to coalesce into one compact epitope. Less epitope fragmentation and higher solvent accessibility of the "cis" model favours it slightly over the "trans" model. Here, IDR-B clusters towards the surface of the MPO-like domain facing the thyroid follicular lumen preventing steric hindrance of autoantibodies. However, conformational rearrangements may still be necessary to allow full engagement with autoantibodies, with IDR-B on both models being close to the dimer interface. Taken together, the modelling highlights the need to consider the oligomeric state of TPO, its conformational properties, and its proximity to the membrane, when interpreting epitope-mapping data.
- Published
- 2015
- Full Text
- View/download PDF
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