128 results on '"Perego"'
Search Results
2. Mitochondrial fitness and cancer risk
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Kossenkov, Andrew V., primary, Milcarek, Andrew, additional, Notta, Faiyaz, additional, Jang, Gun-Ho, additional, Wilson, Julie M., additional, Gallinger, Steven, additional, Zhou, Daniel Cui, additional, Ding, Li, additional, Ghosh, Jagadish C., additional, Perego, Michela, additional, Morotti, Annamaria, additional, Locatelli, Marco, additional, Robert, Marie E., additional, Vaira, Valentina, additional, and Altieri, Dario C., additional
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- 2022
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3. Mitochondrial fitness and cancer risk
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Andrew V. Kossenkov, Andrew Milcarek, Faiyaz Notta, Gun-Ho Jang, Julie M. Wilson, Steven Gallinger, Daniel Cui Zhou, Li Ding, Jagadish C. Ghosh, Michela Perego, Annamaria Morotti, Marco Locatelli, Marie E. Robert, Valentina Vaira, and Dario C. Altieri
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Mitochondrial Proteins ,Pancreatic Neoplasms ,Multidisciplinary ,Antineoplastic Combined Chemotherapy Protocols ,Humans ,Interferons ,Carcinoma, Pancreatic Ductal - Abstract
Changes in metabolism are a hallmark of cancer, but molecular signatures of altered bioenergetics to aid in clinical decision-making do not currently exist. We recently identified a group of human tumors with constitutively reduced expression of the mitochondrial structural protein, Mic60, also called mitofilin or inner membrane mitochondrial protein (IMMT). These Mic60-low tumors exhibit severe loss of mitochondrial fitness, paradoxically accompanied by increased metastatic propensity and upregulation of a unique transcriptome of Interferon (IFN) signaling and Senescence-Associated Secretory Phenotype (SASP). Here, we show that an optimized, 11-gene signature of Mic60-low tumors is differentially expressed in multiple malignancies, compared to normal tissues, and correlates with poor patient outcome. When analyzed in three independent patient cohorts of pancreatic ductal adenocarcinoma (PDAC), the Mic60-low gene signature was associated with aggressive disease variants, local inflammation, FOLFIRINOX failure and shortened survival, independently of age, gender, or stage. Therefore, the 11-gene Mic60-low signature may provide an easily accessible molecular tool to stratify patient risk in PDAC and potentially other malignancies.
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- 2022
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4. Lack of association between heart period variability asymmetry and respiratory sinus arrhythmia in healthy and chronic heart failure individuals
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De Maria, Beatrice, primary, Dalla Vecchia, Laura Adelaide, additional, Maestri, Roberto, additional, Pinna, Gian Domenico, additional, Parati, Monica, additional, Perego, Francesca, additional, Bari, Vlasta, additional, Cairo, Beatrice, additional, Gelpi, Francesca, additional, La Rovere, Maria Teresa, additional, and Porta, Alberto, additional
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- 2021
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5. Nilotinib interferes with cell cycle, ABC transporters and JAK-STAT signaling pathway in CD34+/lin- cells of patients with chronic phase chronic myeloid leukemia after 12 months of treatment
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Lorenza Borin, Francesco Spina, Alessandra Trojani, Mauro Turrini, Chiara Elena, Ester Pungolino, Cristina Bucelli, Roberto Cairoli, Giacomo Baruzzo, Alessandra Perego, Pierangelo Spedini, Gabriella De Canal, Mariella D'Adda, Maria Luisa Latargia, Barbara Di Camillo, Alessandra Dal Molin, Maria Cristina Carraro, Michela Anghilieri, Milena Lodola, Giuseppe Rossi, Simona Malato, Salvatore Artale, Enrica Morra, Alessandra Iurlo, Alessandra, T, Ester, P, Alessandra Dal, M, Milena, L, Giuseppe, R, Mariella, D, Alessandra, P, Chiara, E, Mauro, T, Lorenza, B, Cristina, B, Simona, M, Maria Cristina, C, Francesco, S, Maria Luisa, L, Salvatore, A, Pierangelo, S, Michela, A, Barbara Di, C, Giacomo, B, Gabriella De, C, Alessandra, I, Enrica, M, and Cairoli, R
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0301 basic medicine ,Male ,Cell signaling ,Time Factors ,Microarrays ,Gene Expression ,Signal transduction ,STAT Transcription Factor ,Biochemistry ,0302 clinical medicine ,hemic and lymphatic diseases ,Medicine and Health Sciences ,Cell Cycle and Cell Division ,Multidisciplinary ,Chromosome Biology ,Gene Expression Regulation, Leukemic ,Stem Cell Therapy ,Cell Cycle ,Myeloid leukemia ,JAK-STAT signaling pathway ,Signaling cascades ,Cell cycle ,Middle Aged ,Neoplasm Proteins ,Nucleic acids ,Leukemia ,STAT Transcription Factors ,Bioassays and Physiological Analysis ,Cell Processes ,030220 oncology & carcinogenesis ,Medicine ,Female ,Stem cell ,Tyrosine kinase ,Human ,medicine.drug ,Research Article ,ATP-Binding Cassette Transporter ,Science ,Mitosis ,Biology ,DNA replication ,Neoplasm Protein ,03 medical and health sciences ,Extraction techniques ,Leukemia, Myelogenous, Chronic, BCR-ABL Positive ,medicine ,Genetics ,Humans ,Janus Kinases ,Clinical Genetics ,Biology and Life Sciences ,Cell Biology ,DNA ,medicine.disease ,RNA extraction ,Gene expression profiling ,Research and analysis methods ,030104 developmental biology ,Pyrimidines ,Pyrimidine ,Nilotinib ,JAK-STAT signaling cascade ,Cancer research ,Janus Kinase ,ATP-Binding Cassette Transporters - Abstract
Chronic myeloid leukemia (CML) is characterized by the constitutive tyrosine kinase activity of the oncoprotein BCR-ABL1 in myeloid progenitor cells that activates multiple signal transduction pathways leading to the leukemic phenotype. The tyrosine-kinase inhibitor (TKI) nilotinib inhibits the tyrosine kinase activity of BCR-ABL1 in CML patients. Despite the success of nilotinib treatment in patients with chronic-phase (CP) CML, a population of Philadelphia-positive (Ph+) quiescent stem cells escapes the drug activity and can lead to drug resistance. The molecular mechanism by which these quiescent cells remain insensitive is poorly understood. The aim of this study was to compare the gene expression profiling (GEP) of bone marrow (BM) CD34+/lin- cells from CP-CML patients at diagnosis and after 12 months of nilotinib treatment by microarray, in order to identify gene expression changes and the dysregulation of pathways due to nilotinib action. We selected BM CD34+/lin- cells from 78 CP-CML patients at diagnosis and after 12 months of first-line nilotinib therapy and microarray analysis was performed. GEP bioinformatic analyses identified 2,959 differently expressed probes and functional clustering determined some significantly enriched pathways between diagnosis and 12 months of nilotinib treatment. Among these pathways, we observed the under expression of 26 genes encoding proteins belonging to the cell cycle after 12 months of nilotinib treatment which led to the up-regulation of chromosome replication, cell proliferation, DNA replication, and DNA damage checkpoint at diagnosis. We demonstrated the under expression of the ATP-binding cassette (ABC) transporters ABCC4, ABCC5, and ABCD3 encoding proteins which pumped drugs out of the cells after 12 months of nilotinib. Moreover, GEP data demonstrated the deregulation of genes involved in the JAK-STAT signaling pathway. The down-regulation of JAK2, IL7, STAM, PIK3CA, PTPN11, RAF1, and SOS1 key genes after 12 months of nilotinib could demonstrate the up-regulation of cell cycle, proliferation and differentiation via MAPK and PI3K-AKT signaling pathways at diagnosis.
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- 2019
6. Analysis of determinants for in vitro resistance to the small molecule deubiquitinase inhibitor b-AP15
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Mofers, Arjan, Perego, Paola, Selvaraju, Karthik, Gatti, Laura, Gullbo, Joachim, Linder, Stig, and D'Arcy, Padraig
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Science ,Cancer Treatment ,Medical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy) ,Antineoplastic Agents ,Apoptosis ,Biochemistry ,Benzylidene Compounds ,Plasma Cell Disorders ,Hematologic Cancers and Related Disorders ,Bortezomib ,Drug Therapy ,Medicine and Health Sciences ,Tumor Cells, Cultured ,Humans ,Cell Cycle and Cell Division ,Myelomas and Lymphoproliferative Diseases ,Cell Cycle Inhibitors ,Medicinsk bioteknologi (med inriktning mot cellbiologi (inklusive stamcellsbiologi), molekylärbiologi, mikrobiologi, biokemi eller biofarmaci) ,Cell Proliferation ,Cancer och onkologi ,Cell Death ,Pharmaceutics ,Biology and Life Sciences ,Proteins ,Protein Complexes ,Proteasomes ,Cancers and Neoplasms ,Cell Biology ,Hematology ,Azepines ,Glutathione ,Myelomas ,Oncology ,Cell Processes ,Drug Resistance, Neoplasm ,Cancer and Oncology ,Colonic Neoplasms ,Medicine ,Multiple Myeloma ,Peptides ,Proteasome Inhibitors ,Research Article - Abstract
Background: b-AP15NLX1570 are small molecule inhibitors of the ubiquitin specific peptidase 14 (USP14) and ubiquitin carboxyl-terminal hydrolase 5 (UCHL5) deubiquitinases (DUBs) of the 19S proteasome. b-AP15NLX1570 have been shown to be cytotoxic to cells resistant to bortezomib, raising the possibility that this class of drugs can be used as a second-line therapy for treatment-resistant multiple myeloma. Limited information is available with regard to potential resistance mechanisms to b-AP15NLX1570. Results: We found that b-AP15-induced cell death is cell-cycle dependent and that non-cycling tumor cells may evade b-AP15-induced cell death. Such non-cycling cells may re-enter the proliferative state to form colonies of drug-sensitive cells. Long-term selection of cells with b-AP15 resulted in limited drug resistance (similar to 2-fold) that could be reversed by buthionine sulphoximine, implying altered glutathione (GSH) metabolism as a resistance mechanism. In contrast, drug uptake and overexpression of drug efflux transporters were found not to be associated with b-AP15 resistance. Conclusions: The proteasome DUB inhibitors b-AP15NLX1570 are cell cycle-active. The slow and incomplete development of resistance towards these compounds is an attractive feature in view of future clinical use.
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- 2019
7. Nilotinib interferes with cell cycle, ABC transporters and JAK-STAT signaling pathway in CD34+/lin- cells of patients with chronic phase chronic myeloid leukemia after 12 months of treatment
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Trojani, Alessandra, primary, Pungolino, Ester, additional, Dal Molin, Alessandra, additional, Lodola, Milena, additional, Rossi, Giuseppe, additional, D’Adda, Mariella, additional, Perego, Alessandra, additional, Elena, Chiara, additional, Turrini, Mauro, additional, Borin, Lorenza, additional, Bucelli, Cristina, additional, Malato, Simona, additional, Carraro, Maria Cristina, additional, Spina, Francesco, additional, Latargia, Maria Luisa, additional, Artale, Salvatore, additional, Spedini, Pierangelo, additional, Anghilieri, Michela, additional, Di Camillo, Barbara, additional, Baruzzo, Giacomo, additional, De Canal, Gabriella, additional, Iurlo, Alessandra, additional, Morra, Enrica, additional, and Cairoli, Roberto, additional
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- 2019
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8. Hereditary angioedema: Assessing the hypothesis for underlying autonomic dysfunction
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Eleonora Tobaldini, Nada Afifi Afifi, Maddalena Alessandra Wu, Chiara Suffritti, Marco Cicardi, Francesco Casella, Chiara Cogliati, Andrea Zanichelli, Nicola Montano, and Francesca Perego
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Male ,Physiology ,Vascular Permeability ,Social Sciences ,lcsh:Medicine ,Blood Pressure ,030204 cardiovascular system & hematology ,Pathology and Laboratory Medicine ,Vascular Medicine ,Nervous System ,Epithelium ,Orthostatic vital signs ,chemistry.chemical_compound ,Electrocardiography ,0302 clinical medicine ,Heart Rate ,Animal Cells ,Blood plasma ,Medicine and Health Sciences ,Heart rate variability ,Psychology ,lcsh:Science ,Immune Response ,Multidisciplinary ,Middle Aged ,Body Fluids ,Blood ,Hereditary angioedema ,Female ,Anatomy ,Cellular Types ,Research Article ,Adult ,medicine.medical_specialty ,Immunology ,Cardiology ,Bradykinin ,Psychological Stress ,Autonomic Nervous System ,Blood Plasma ,03 medical and health sciences ,Signs and Symptoms ,Diagnostic Medicine ,Internal medicine ,Heart rate ,Mental Health and Psychiatry ,medicine ,Humans ,Inflammation ,business.industry ,lcsh:R ,Angioedemas, Hereditary ,Biology and Life Sciences ,Endothelial Cells ,Epithelial Cells ,Cell Biology ,medicine.disease ,Autonomic nervous system ,Endocrinology ,Blood pressure ,Biological Tissue ,chemistry ,Case-Control Studies ,lcsh:Q ,business ,030217 neurology & neurosurgery - Abstract
Background Attacks of Hereditary Angioedema due to C1-inhibitor deficiency (C1-INH-HAE)are often triggered by stressful events/hormonal changes. Objective Our study evaluates the relationship between autonomic nervous system (ANS) and contact/complement system activation. Methods Twenty-three HAE patients (6 males, mean age 47.5±11.4 years) during remission and 24 healthy controls (8 males, mean age 45.3±10.6 years) were studied. ECG, beat-by-beat blood pressure, respiratory activity were continuously recorded during rest (10') and 75-degrees-head-up tilt (10'). C1-INH, C4, cleaved high molecular weight kininogen (cHK) were assessed; in 16 patients and 11 controls plasma catecholamines were also evaluated. Spectral analysis of heart rate variability allowed extraction of low-(LF) and high-(HF) frequency components, markers of sympathetic and vagal modulation respectively. Results HAE patients showed higher mean systolic arterial pressure (SAP) than controls during both rest and tilt. Tilt induced a significant increase in SAP and its variability only in controls. Although sympathetic modulation (LFnu) increased significantly with tilt in both groups, LF/HF ratio, index of sympathovagal balance, increased significantly only in controls. At rest HAE patients showed higher noradrenaline values (301.4±132.9 pg/ml vs 210.5±89.6pg/ml, p = 0.05). Moreover, in patients tilt was associated with a significant increase in cHK, marker of contact system activation (49.5 ± 7.5% after T vs 47.1 ± 7.8% at R, p = 0.01). Conclusions Our data are consistent with altered ANS modulation in HAE patients, i.e. increased sympathetic activation at rest and blunted response to orthostatic challenge. Tilt test-induced increased HK cleavage suggests a link between stress and bradykinin production.
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- 2017
9. Hereditary angioedema: Assessing the hypothesis for underlying autonomic dysfunction
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Wu, Maddalena A., primary, Casella, Francesco, additional, Perego, Francesca, additional, Suffritti, Chiara, additional, Afifi Afifi, Nada, additional, Tobaldini, Eleonora, additional, Zanichelli, Andrea, additional, Cogliati, Chiara, additional, Montano, Nicola, additional, and Cicardi, Marco, additional
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- 2017
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10. Exploring the Y Chromosomal Ancestry of Modern Panamanians
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Grugni, Viola, primary, Battaglia, Vincenza, additional, Perego, Ugo Alessandro, additional, Raveane, Alessandro, additional, Lancioni, Hovirag, additional, Olivieri, Anna, additional, Ferretti, Luca, additional, Woodward, Scott R., additional, Pascale, Juan Miguel, additional, Cooke, Richard, additional, Myres, Natalie, additional, Motta, Jorge, additional, Torroni, Antonio, additional, Achilli, Alessandro, additional, and Semino, Ornella, additional
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- 2015
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11. The First Peopling of South America: New Evidence from Y-Chromosome Haplogroup Q
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Alessandro Achilli, Antonio Torroni, Viola Grugni, J. Edgar Gomez-Palmieri, Norman Angerhofer, Ugo A. Perego, Natalie M. Myres, Scott R. Woodward, Ornella Semino, and Vincenza Battaglia
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Evolutionary Genetics ,Male ,Mesoamerica ,Haplogroup ,History, Ancient ,Phylogeny ,education.field_of_study ,Multidisciplinary ,Plateau ,geography.geographical_feature_category ,Paleogenetics ,Gene Pool ,Medicine ,Algorithms ,Research Article ,Gene Flow ,Science ,Population ,Biology ,DNA, Mitochondrial ,Beringia ,Genetics ,Humans ,education ,Y-chromosome ,geography ,Evolutionary Biology ,Chromosomes, Human, Y ,Population Biology ,Haplogroup Q ,South America ,Indians, South American ,Haplotype ,Genetic Drift ,Human Genetics ,Mongolia ,Indians, Central American ,Siberia ,Genetics, Population ,Haplotypes ,Evolutionary biology ,Mutation ,Genetic Polymorphism ,Indians, North American ,Far East ,Population Genetics ,Microsatellite Repeats - Abstract
Recent progress in the phylogenetic resolution of the Y-chromosome phylogeny permits the male demographic dynamics and migratory events that occurred in Central and Southern America after the initial human spread into the Americas to be investigated at the regional level. To delve further into this issue, we examined more than 400 Native American Y chromosomes (collected in the region ranging from Mexico to South America) belonging to haplogroup Q – virtually the only branch of the Y phylogeny observed in modern-day Amerindians of Central and South America – together with 27 from Mongolia and Kamchatka. Two main founding lineages, Q1a3a1a-M3 and Q1a3a1-L54(xM3), were detected along with novel sub-clades of younger age and more restricted geographic distributions. The first was also observed in Far East Asia while no Q1a3a1-L54(xM3) Y chromosome was found in Asia except the southern Siberian-specific sub-clade Q1a3a1c-L330. Our data not only confirm a southern Siberian origin of ancestral populations that gave rise to Paleo-Indians and the differentiation of both Native American Q founding lineages in Beringia, but support their concomitant arrival in Mesoamerica, where Mexico acted as recipient for the first wave of migration, followed by a rapid southward migration, along the Pacific coast, into the Andean region. Although Q1a3a1a-M3 and Q1a3a1-L54(xM3) display overlapping general distributions, they show different patterns of evolution in the Mexican plateau and the Andean area, which can be explained by local differentiations due to demographic events triggered by the introduction of agriculture and associated with the flourishing of the Great Empires.
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- 2013
12. Molecular dissection of the basal clades in the human Y chromosome phylogenetic tree
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Beniamino Trombetta, Fulvio Cruciani, Eugenia D'Atanasio, Rosaria Scozzari, Ugo A. Perego, Natalie M. Myres, and Andrea Massaia
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Evolutionary Genetics ,Evolutionary Processes ,Heredity ,Science ,Biology ,Y chromosome ,Social and Behavioral Sciences ,Polymorphism, Single Nucleotide ,Human Evolution ,Haplogroup ,Molecular Genetics ,Phylogenetics ,Genetics ,Humans ,Evolutionary Systematics ,Clade ,Phylogeny ,Evolutionary Biology ,Multidisciplinary ,Chromosomes, Human, Y ,Phylogenetic tree ,Population Biology ,Genome, Human ,Haplotype ,Computational Biology ,Paleontology ,Subclade ,Human Genetics ,Gene Pool ,Y-Linked ,Organismal Evolution ,Biological Anthropology ,Haplotypes ,Biogeography ,Anthropology ,Mutation ,Genetic Polymorphism ,Medicine ,Human genome ,Sequence Analysis ,Population Genetics ,Microsatellite Repeats ,Research Article - Abstract
One hundred and forty-six previously detected mutations were more precisely positioned in the human Y chromosome phylogeny by the analysis of 51 representative Y chromosome haplogroups and the use of 59 mutations from literature. Twenty-two new mutations were also described and incorporated in the revised phylogeny. This analysis made it possible to identify new haplogroups and to resolve a deep trifurcation within haplogroup B2. Our data provide a highly resolved branching in the African-specific portion of the Y tree and support the hypothesis of an origin in the north-western quadrant of the African continent for the human MSY diversity.
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- 2012
13. p53-Dependent Activation of microRNA-34a in Response to Etoposide-Induced DNA Damage in Osteosarcoma Cell Lines Not Impaired by Dominant Negative p53 Expression
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Novello, Chiara, primary, Pazzaglia, Laura, additional, Conti, Amalia, additional, Quattrini, Irene, additional, Pollino, Serena, additional, Perego, Paola, additional, Picci, Piero, additional, and Benassi, Maria Serena, additional
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- 2014
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14. Lung Epithelial Injury by B. Anthracis Lethal Toxin Is Caused by MKK-Dependent Loss of Cytoskeletal Integrity
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Mandy Lehmann, Ulla G. Knaus, Malcolm R. Wood, Deborah Noack, and Marta Perego
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Cell Membrane Permeability ,lcsh:Medicine ,Fluorescent Antibody Technique ,Apoptosis ,Respiratory Medicine/Respiratory Infections ,MKKS ,Cell Biology/Cell Signaling ,GTP Phosphohydrolases ,Infectious Diseases/Bacterial Infections ,chemistry.chemical_compound ,Cell Movement ,lcsh:Science ,Cytoskeleton ,Cells, Cultured ,0303 health sciences ,Multidisciplinary ,030302 biochemistry & molecular biology ,Metalloendopeptidases ,Cell migration ,Lung Injury ,3. Good health ,Bacillus anthracis ,Cell biology ,Actin Cytoskeleton ,Keratinocyte growth factor ,Research Article ,Cell Survival ,Bacterial Toxins ,Blotting, Western ,Bronchi ,Lung injury ,Biology ,Focal adhesion ,03 medical and health sciences ,Cell Biology/Cytoskeleton ,Cell Adhesion ,Humans ,Cell Biology/Chemical Biology of the Cell ,030304 developmental biology ,Mitogen-Activated Protein Kinase Kinases ,Antigens, Bacterial ,Wound Healing ,lcsh:R ,Lentivirus ,Epithelial Cells ,Actin cytoskeleton ,biology.organism_classification ,Molecular biology ,Cell Biology/Cell Adhesion ,chemistry ,lcsh:Q - Abstract
Bacillus anthracis lethal toxin (LT) is a key virulence factor of anthrax and contributes significantly to the in vivo pathology. The enzymatically active component is a Zn(2+)-dependent metalloprotease that cleaves most isoforms of mitogen-activated protein kinase kinases (MKKs). Using ex vivo differentiated human lung epithelium we report that LT destroys lung epithelial barrier function and wound healing responses by immobilizing the actin and microtubule network. Long-term exposure to the toxin generated a unique cellular phenotype characterized by increased actin filament assembly, microtubule stabilization, and changes in junction complexes and focal adhesions. LT-exposed cells displayed randomly oriented, highly dynamic protrusions, polarization defects and impaired cell migration. Reconstitution of MAPK pathways revealed that this LT-induced phenotype was primarily dependent on the coordinated loss of MKK1 and MKK2 signaling. Thus, MKKs control fundamental aspects of cytoskeletal dynamics and cell motility. Even though LT disabled repair mechanisms, agents such as keratinocyte growth factor or dexamethasone improved epithelial barrier integrity by reducing cell death. These results suggest that co-administration of anti-cytotoxic drugs may be of benefit when treating inhalational anthrax.
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- 2009
15. Altered Insulin Receptor Signalling and β-Cell Cycle Dynamics in Type 2 Diabetes Mellitus
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Folli, Franco, primary, Okada, Terumasa, additional, Perego, Carla, additional, Gunton, Jenny, additional, Liew, Chong Wee, additional, Akiyama, Masaru, additional, D'Amico, Anna, additional, La Rosa, Stefano, additional, Placidi, Claudia, additional, Lupi, Roberto, additional, Marchetti, Piero, additional, Sesti, Giorgio, additional, Hellerstein, Marc, additional, Perego, Lucia, additional, and Kulkarni, Rohit N., additional
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- 2011
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16. Mitochondrial DNA Backgrounds Might Modulate Diabetes Complications Rather than T2DM as a Whole
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Antonio Ceriello, Roberto Testa, Maria Pala, Francesca Gandini, Liana Spazzafumo, Hovirag Lancioni, Maurizio Marra, Maria Nicola Gadaleta, Viola Grugni, Baharak Hooshiar Kashani, Valeria Carossa, Alessandro Achilli, Massimo Boemi, Antonio Torroni, Ivano Testa, Anna Olivieri, C. Sirolla, Aurelia Santoro, Ugo A. Perego, Anna Rita Bonfigli, Antonella Cormio, Ornella Semino, Vincenza Battaglia, Claudio Franceschi, Achilli A., Olivieri A., Pala M., Hooshiar Kashani B., Carossa V., Perego U.A., Gandini F., Santoro A., Battaglia V., Grugni V., Lancioni H., Sirolla C., Bonfigli A.R., Cormio A., Boemi M., Testa I., Semino O., Ceriello A., Spazzafumo L., Gadaleta M.N., Marra M., Testa R., Franceschi C., and Torroni A.
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Male ,Mitochondrial Diseases ,lcsh:Medicine ,Type 2 diabetes ,Mitochondrion ,Q1 ,Type 2 diabete ,Haplogroup ,diabetic complications ,lcsh:Science ,Phylogeny ,Genetics ,education.field_of_study ,Multidisciplinary ,mtDNA ,Diabetes ,Middle Aged ,Female ,MITOCHONDRIAL DNA ,Research Article ,Adult ,haplogroup ,Mitochondrial DNA ,Population ,Biology ,DNA, Mitochondrial ,Diabetes Complications ,Diabetes mellitus ,medicine ,Humans ,Genetic Predisposition to Disease ,education ,QH426 ,Genetic Association Studies ,Aged ,lcsh:R ,Haplotype ,Case-control study ,nutritional and metabolic diseases ,Human Genetics ,medicine.disease ,Diabetes Mellitus and Deafness ,Diabetes Mellitus, Type 2 ,Haplotypes ,Case-Control Studies ,Genome, Mitochondrial ,Genetic Polymorphism ,lcsh:Q ,Population Genetics - Abstract
Mitochondrial dysfunction has been implicated in rare and common forms of type 2 diabetes (T2DM). Additionally, rare mitochondrial DNA (mtDNA) mutations have been shown to be causal for T2DM pathogenesis. So far, many studies have investigated the possibility that mtDNA variation might affect the risk of T2DM, however, when found, haplogroup association has been rarely replicated, even in related populations, possibly due to an inadequate level of haplogroup resolution. Effects of mtDNA variation on diabetes complications have also been proposed. However, additional studies evaluating the mitochondrial role on both T2DM and related complications are badly needed. To test the hypothesis of a mitochondrial genome effect on diabetes and its complications, we genotyped the mtDNAs of 466 T2DM patients and 438 controls from a regional population of central Italy (Marche). Based on the most updated mtDNA phylogeny, all 904 samples were classified into 57 different mitochondrial sub-haplogroups, thus reaching an unprecedented level of resolution. We then evaluated whether the susceptibility of developing T2DM or its complications differed among the identified haplogroups, considering also the potential effects of phenotypical and clinical variables. MtDNA backgrounds, even when based on a refined haplogroup classification, do not appear to play a role in developing T2DM despite a possible protective effect for the common European haplogroup H1, which harbors the G3010A transition in the MTRNR2 gene. In contrast, our data indicate that different mitochondrial haplogroups are significantly associated with an increased risk of specific diabetes complications: H (the most frequent European haplogroup) with retinopathy, H3 with neuropathy, U3 with nephropathy, and V with renal failure.
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- 2011
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17. Phylogenetic Relationships of Three Italian Merino-Derived Sheep Breeds Evaluated through a Complete Mitogenome Analysis
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Lancioni, Hovirag, primary, Di Lorenzo, Piera, additional, Ceccobelli, Simone, additional, Perego, Ugo A., additional, Miglio, Arianna, additional, Landi, Vincenzo, additional, Antognoni, Maria T., additional, Sarti, Francesca M., additional, Lasagna, Emiliano, additional, and Achilli, Alessandro, additional
- Published
- 2013
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18. The First Peopling of South America: New Evidence from Y-Chromosome Haplogroup Q
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Battaglia, Vincenza, primary, Grugni, Viola, additional, Perego, Ugo Alessandro, additional, Angerhofer, Norman, additional, Gomez-Palmieri, J. Edgar, additional, Woodward, Scott Ray, additional, Achilli, Alessandro, additional, Myres, Natalie, additional, Torroni, Antonio, additional, and Semino, Ornella, additional
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- 2013
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19. Mitogenomes from Two Uncommon Haplogroups Mark Late Glacial/Postglacial Expansions from the Near East and Neolithic Dispersals within Europe
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Olivieri, Anna, primary, Pala, Maria, additional, Gandini, Francesca, additional, Kashani, Baharak Hooshiar, additional, Perego, Ugo A., additional, Woodward, Scott R., additional, Grugni, Viola, additional, Battaglia, Vincenza, additional, Semino, Ornella, additional, Achilli, Alessandro, additional, Richards, Martin B., additional, and Torroni, Antonio, additional
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- 2013
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20. Inside the “African Cattle Complex”: Animal Burials in the Holocene Central Sahara
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di Lernia, Savino, primary, Tafuri, Mary Anne, additional, Gallinaro, Marina, additional, Alhaique, Francesca, additional, Balasse, Marie, additional, Cavorsi, Lucia, additional, Fullagar, Paul D., additional, Mercuri, Anna Maria, additional, Monaco, Andrea, additional, Perego, Alessandro, additional, and Zerboni, Andrea, additional
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- 2013
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21. Arrival of Paleo-Indians to the Southern Cone of South America: New Clues from Mitogenomes
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de Saint Pierre, Michelle, primary, Gandini, Francesca, additional, Perego, Ugo A., additional, Bodner, Martin, additional, Gómez-Carballa, Alberto, additional, Corach, Daniel, additional, Angerhofer, Norman, additional, Woodward, Scott R., additional, Semino, Ornella, additional, Salas, Antonio, additional, Parson, Walther, additional, Moraga, Mauricio, additional, Achilli, Alessandro, additional, Torroni, Antonio, additional, and Olivieri, Anna, additional
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- 2012
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22. Molecular Dissection of the Basal Clades in the Human Y Chromosome Phylogenetic Tree
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Scozzari, Rosaria, primary, Massaia, Andrea, additional, D’Atanasio, Eugenia, additional, Myres, Natalie M., additional, Perego, Ugo A., additional, Trombetta, Beniamino, additional, and Cruciani, Fulvio, additional
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- 2012
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23. Decrypting the Mitochondrial Gene Pool of Modern Panamanians
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Perego, Ugo A., primary, Lancioni, Hovirag, additional, Tribaldos, Maribel, additional, Angerhofer, Norman, additional, Ekins, Jayne E., additional, Olivieri, Anna, additional, Woodward, Scott R., additional, Pascale, Juan Miguel, additional, Cooke, Richard, additional, Motta, Jorge, additional, and Achilli, Alessandro, additional
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- 2012
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24. Mitochondrial DNA Backgrounds Might Modulate Diabetes Complications Rather than T2DM as a Whole
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Achilli, Alessandro, primary, Olivieri, Anna, additional, Pala, Maria, additional, Hooshiar Kashani, Baharak, additional, Carossa, Valeria, additional, Perego, Ugo A., additional, Gandini, Francesca, additional, Santoro, Aurelia, additional, Battaglia, Vincenza, additional, Grugni, Viola, additional, Lancioni, Hovirag, additional, Sirolla, Cristina, additional, Bonfigli, Anna Rita, additional, Cormio, Antonella, additional, Boemi, Massimo, additional, Testa, Ivano, additional, Semino, Ornella, additional, Ceriello, Antonio, additional, Spazzafumo, Liana, additional, Gadaleta, Maria Nicola, additional, Marra, Maurizio, additional, Testa, Roberto, additional, Franceschi, Claudio, additional, and Torroni, Antonio, additional
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- 2011
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25. Effects of Weight Loss in Metabolically Healthy Obese Subjects after Laparoscopic Adjustable Gastric Banding and Hypocaloric Diet
- Author
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Sesti, Giorgio, primary, Folli, Franco, additional, Perego, Lucia, additional, Hribal, Marta Letizia, additional, and Pontiroli, Antonio E., additional
- Published
- 2011
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- View/download PDF
26. Proteomics Reveals Novel Oxidative and Glycolytic Mechanisms in Type 1 Diabetic Patients' Skin Which Are Normalized by Kidney-Pancreas Transplantation
- Author
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Folli, Franco, primary, Guzzi, Valeria, additional, Perego, Lucia, additional, Coletta, Dawn K., additional, Finzi, Giovanna, additional, Placidi, Claudia, additional, La Rosa, Stefano, additional, Capella, Carlo, additional, Socci, Carlo, additional, Lauro, Davide, additional, Tripathy, Devjit, additional, Jenkinson, Christopher, additional, Paroni, Rita, additional, Orsenigo, Elena, additional, Cighetti, Giuliana, additional, Gregorini, Luisa, additional, Staudacher, Carlo, additional, Secchi, Antonio, additional, Bachi, Angela, additional, Brownlee, Michael, additional, and Fiorina, Paolo, additional
- Published
- 2010
- Full Text
- View/download PDF
27. Influence of Climate on Emergency Department Visits for Syncope: Role of Air Temperature Variability
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Andrea Galli, Franca Barbic, Marta Borella, Giorgio Costantino, Francesca Perego, Franca Dipaola, Francesco Casella, Pier Giorgio Duca, Andrè Diedrich, Satish Raj, David Robertson, Alberto Porta, Raffaello Furlan, and STePS Investigators
- Subjects
Adult ,Male ,medicine.medical_specialty ,Anatomy and Physiology ,Climate ,lcsh:Medicine ,Arrhythmias ,Cardiovascular ,Cardiovascular System ,Syncope ,Young Adult ,Cardiovascular Diseases in Women ,medicine ,Humans ,lcsh:Science ,Intensive care medicine ,Biology ,Aged ,Multidisciplinary ,biology ,Clinical events ,business.industry ,Acute Cardiovascular Problems ,Air ,lcsh:R ,Temperature ,Syncope (genus) ,Emergency department ,Middle Aged ,biology.organism_classification ,Blood pressure ,Italy ,Air temperature ,Computer Science ,Medicine ,Women's Health ,Female ,lcsh:Q ,Public Health ,Seasons ,Emergency Service, Hospital ,business ,Geriatric Cardiology ,Environmental Health ,Research Article - Abstract
BACKGROUND: Syncope is a clinical event characterized by a transient loss of consciousness, estimated to affect 6.2/1000 person-years, resulting in remarkable health care and social costs. Human pathophysiology suggests that heat may promote syncope during standing. We tested the hypothesis that the increase of air temperatures from January to July would be accompanied by an increased rate of syncope resulting in a higher frequency of Emergency Department (ED) visits. We also evaluated the role of maximal temperature variability in affecting ED visits for syncope. METHODOLOGY/PRINCIPAL FINDINGS: We included 770 of 2775 consecutive subjects who were seen for syncope at four EDs between January and July 2004. This period was subdivided into three epochs of similar length: 23 January-31 March, 1 April-31 May and 1 June-31 July. Spectral techniques were used to analyze oscillatory components of day by day maximal temperature and syncope variability and assess their linear relationship. There was no correlation between daily maximum temperatures and number of syncope. ED visits for syncope were lower in June and July when maximal temperature variability declined although the maximal temperatures themselves were higher. Frequency analysis of day by day maximal temperature variability showed a major non-random fluctuation characterized by a ∼23-day period and two minor oscillations with ∼3- and ∼7-day periods. This latter oscillation was correlated with a similar ∼7-day fluctuation in ED visits for syncope. CONCLUSIONS/SIGNIFICANCE: We conclude that ED visits for syncope were not predicted by daily maximal temperature but were associated with increased temperature variability. A ∼7-day rhythm characterized both maximal temperatures and ED visits for syncope variability suggesting that climate changes may have a significant effect on the mode of syncope occurrence.
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- 2011
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28. AQP1 Is Not Only a Water Channel: It Contributes to Cell Migration through Lin7/Beta-Catenin
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Monzani, Elena, primary, Bazzotti, Riccardo, additional, Perego, Carla, additional, and La Porta, Caterina A. M., additional
- Published
- 2009
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29. The Multifaceted Origin of Taurine Cattle Reflected by the Mitochondrial Genome
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Achilli, Alessandro, primary, Bonfiglio, Silvia, additional, Olivieri, Anna, additional, Malusà, Arianna, additional, Pala, Maria, additional, Kashani, Baharak Hooshiar, additional, Perego, Ugo A., additional, Ajmone-Marsan, Paolo, additional, Liotta, Luigi, additional, Semino, Ornella, additional, Bandelt, Hans-Jürgen, additional, Ferretti, Luca, additional, and Torroni, Antonio, additional
- Published
- 2009
- Full Text
- View/download PDF
30. Lung Epithelial Injury by B. Anthracis Lethal Toxin Is Caused by MKK-Dependent Loss of Cytoskeletal Integrity
- Author
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Lehmann, Mandy, primary, Noack, Deborah, additional, Wood, Malcolm, additional, Perego, Marta, additional, and Knaus, Ulla G., additional
- Published
- 2009
- Full Text
- View/download PDF
31. The Phylogeny of the Four Pan-American MtDNA Haplogroups: Implications for Evolutionary and Disease Studies
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Achilli, Alessandro, primary, Perego, Ugo A., additional, Bravi, Claudio M., additional, Coble, Michael D., additional, Kong, Qing-Peng, additional, Woodward, Scott R., additional, Salas, Antonio, additional, Torroni, Antonio, additional, and Bandelt, Hans-Jürgen, additional
- Published
- 2008
- Full Text
- View/download PDF
32. AQP1 Is Not Only a Water Channel: It Contributes to Cell Migration through Lin7/Beta-Catenin
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Carla Perego, Riccardo Bazzotti, Caterina A. M. La Porta, and Elena Monzani
- Subjects
Small interfering RNA ,Quantitative Biology - Subcellular Processes ,Beta-catenin ,Angiogenesis ,Blotting, Western ,Vesicular Transport Proteins ,Fluorescent Antibody Technique ,lcsh:Medicine ,Biology ,Quantitative Biology - Quantitative Methods ,Cell Biology/Cell Signaling ,Cell Line ,Mice ,Cell Movement ,Cell Biology/Cytoskeleton ,Cell Behavior (q-bio.CB) ,Animals ,Humans ,Immunoprecipitation ,Gene silencing ,Gene Silencing ,RNA, Small Interfering ,lcsh:Science ,Subcellular Processes (q-bio.SC) ,beta Catenin ,Quantitative Methods (q-bio.QM) ,Mice, Knockout ,Multidisciplinary ,Aquaporin 1 ,Base Sequence ,Reverse Transcriptase Polymerase Chain Reaction ,lcsh:R ,Membrane Proteins ,Cell migration ,Cell Biology ,Transfection ,Cell biology ,Endothelial stem cell ,Cell culture ,Gene Knockdown Techniques ,FOS: Biological sciences ,biology.protein ,Quantitative Biology - Cell Behavior ,lcsh:Q ,Carrier Proteins ,Research Article - Abstract
Background AQP1 belongs to aquaporins family, water-specific, membrane-channel proteins expressed in diverse tissues. Recent papers showed that during angiogenesis, AQP1 is expressed preferentially by microvessels, favoring angiogenesis via the increase of permeability In particular, in AQP1 null mice, endothelial cell migration is impaired without altering their proliferation or adhesion. Therefore, AQP1 has been proposed as a novel promoter of tumor angiogenesis. Methods/Findings Using targeted silencing of AQP1 gene expression, an impairment in the organization of F-actin and a reduced migration capacity was demonstrated in human endothelial and melanoma cell lines. Interestingly, we showed, for the first time, that AQP1 co-immunoprecipitated with Lin-7. Lin7-GFP experiments confirmed co-immunoprecipitation. In addition, the knock down of AQP1 decreased the level of expression of Lin-7 and β-catenin and the inhibition of proteasome contrasted partially such a decrease. Conclusions/Significance All together, our findings show that AQP1 plays a role inside the cells through Lin-7/β-catenin interaction. Such a role of AQP1 is the same in human melanoma and endothelial cells, suggesting that AQP1 plays a global physiological role. A model is presented.
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- 2009
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33. Influence of Climate on Emergency Department Visits for Syncope: Role of Air Temperature Variability.
- Author
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Galli, Andrea, Barbic, Franca, Borella, Marta, Costantino, Giorgio, Perego, Francesca, Dipaola, Franca, Casella, Francesco, Duca, Pier Giorgio, Diedrich, Andrè, Raj, Satish, Robertson, David, Porta, Alberto, and Furlan, Raffaello
- Subjects
CLIMATOLOGY ,SYNCOPE ,CONSCIOUSNESS ,MEDICAL care ,HOSPITALS ,EXTERNALITIES ,PATHOLOGICAL physiology - Abstract
Background: Syncope is a clinical event characterized by a transient loss of consciousness, estimated to affect 6.2/1000 person-years, resulting in remarkable health care and social costs. Human pathophysiology suggests that heat may promote syncope during standing. We tested the hypothesis that the increase of air temperatures from January to July would be accompanied by an increased rate of syncope resulting in a higher frequency of Emergency Department (ED) visits. We also evaluated the role of maximal temperature variability in affecting ED visits for syncope. Methodology/Principal Findings: We included 770 of 2775 consecutive subjects who were seen for syncope at four EDs between January and July 2004. This period was subdivided into three epochs of similar length: 23 January-31 March, 1 April-31 May and 1 June-31 July. Spectral techniques were used to analyze oscillatory components of day by day maximal temperature and syncope variability and assess their linear relationship. There was no correlation between daily maximum temperatures and number of syncope. ED visits for syncope were lower in June and July when maximal temperature variability declined although the maximal temperatures themselves were higher. Frequency analysis of day by day maximal temperature variability showed a major non-random fluctuation characterized by a ∼23-day period and two minor oscillations with ∼3- and ∼7-day periods. This latter oscillation was correlated with a similar ∼7-day fluctuation in ED visits for syncope. Conclusions/Significance: We conclude that ED visits for syncope were not predicted by daily maximal temperature but were associated with increased temperature variability. A ∼7-day rhythm characterized both maximal temperatures and ED visits for syncope variability suggesting that climate changes may have a significant effect on the mode of syncope occurrence. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
34. High glucose induces an activated state of partial epithelial-mesenchymal transition in human primary tubular cell cultures.
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Barbara Torsello, Sofia De Marco, Silvia Bombelli, Ingrid Cifola, Ivana Morabito, Lara Invernizzi, Chiara Meregalli, Nicola Zucchini, Guido Strada, Roberto A Perego, and Cristina Bianchi
- Subjects
Medicine ,Science - Abstract
Tubulointerstitial fibrosis is observed in diabetic nephropathy. It is still debated whether tubular cells, undergoing epithelial-mesenchymal transition (EMT) in high glucose (HG) conditions, may contribute to interstitial fibrosis development. In this study, we investigated the phenotypic and molecular EMT-like changes and the alteration of inflammatory and fibrogenic secretome induced by HG in human primary tubular cell cultures. Taking advantage of this in vitro cell model composed of proximal and distal tubular cells, we showed that HG-treated tubular cells acquired a fibroblast-like morphology with increased cytoplasmic stress fibers, maintaining the expression of the epithelial markers specific of proximal and distal tubular cells. HG increased Snail1, miRNA210 and Vimentin mesenchymal markers, decreased N-cadherin expression and migration ability of primary tubular cells, while E-cadherin expression and focal adhesion distribution were not affected. Furthermore, HG treatment of tubular cells altered the inflammatory cytokine secretion creating a secretome able to enhance the proliferation and migration of fibroblasts. Our findings show that HG promotes an activated state of partial EMT in human tubular primary cells and induces a pro-inflammatory and pro-fibrogenic microenvironment, supporting the active role of tubular cells in diabetic nephropathy onset.
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- 2023
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35. Lack of association between heart period variability asymmetry and respiratory sinus arrhythmia in healthy and chronic heart failure individuals.
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Beatrice De Maria, Laura Adelaide Dalla Vecchia, Roberto Maestri, Gian Domenico Pinna, Monica Parati, Francesca Perego, Vlasta Bari, Beatrice Cairo, Francesca Gelpi, Maria Teresa La Rovere, and Alberto Porta
- Subjects
Medicine ,Science - Abstract
Temporal asymmetry is a peculiar aspect of heart period (HP) variability (HPV). HPV asymmetry (HPVA) is reduced with aging and pathology, but its origin is not fully elucidated. Given the impact of respiration on HPV resulting in the respiratory sinus arrhythmia (RSA) and the asymmetric shape of the respiratory pattern, a possible link between HPVA and RSA might be expected. In this study we tested the hypothesis that HPVA is significantly associated with RSA and asymmetry of the respiratory rhythm. We studied 42 middle-aged healthy (H) subjects, and 56 chronic heart failure (CHF) patients of whom 26 assigned to the New York Heart Association (NYHA) class II (CHF-II) and 30 to NYHA class III (CHF-III). Electrocardiogram and lung volume were monitored for 8 minutes during spontaneous breathing (SB) and controlled breathing (CB) at 15 breaths/minute. The ratio of inspiratory (INSP) to expiratory (EXP) phases, namely the I/E ratio, and RSA were calculated. HPVA was estimated as the percentage of negative HP variations, traditionally measured via the Porta's index (PI). Departures of PI from 50% indicated HPVA and its significance was tested via surrogate data. We found that RSA increased during CB and I/E ratio was smaller than 1 in all groups and experimental conditions. In H subjects the PI was about 50% during SB and it increased significantly during CB. In both CHF-II and CHF-III groups the PI was about 50% during SB and remained unmodified during CB. The PI was uncorrelated with RSA and I/E ratio regardless of the experimental condition and group. Pooling together data of different experimental conditions did not affect conclusions. Therefore, we conclude that the HPVA cannot be explained by RSA and/or I/E ratio, thus representing a peculiar feature of the cardiac control that can be aroused in middle-aged H individuals via CB.
- Published
- 2021
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36. Analysis of determinants for in vitro resistance to the small molecule deubiquitinase inhibitor b-AP15.
- Author
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Arjan Mofers, Paola Perego, Karthik Selvaraju, Laura Gatti, Joachim Gullbo, Stig Linder, and Padraig D'Arcy
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Medicine ,Science - Abstract
BACKGROUND:b-AP15/VLX1570 are small molecule inhibitors of the ubiquitin specific peptidase 14 (USP14) and ubiquitin carboxyl-terminal hydrolase 5 (UCHL5) deubiquitinases (DUBs) of the 19S proteasome. b-AP15/VLX1570 have been shown to be cytotoxic to cells resistant to bortezomib, raising the possibility that this class of drugs can be used as a second-line therapy for treatment-resistant multiple myeloma. Limited information is available with regard to potential resistance mechanisms to b-AP15/VLX1570. RESULTS:We found that b-AP15-induced cell death is cell-cycle dependent and that non-cycling tumor cells may evade b-AP15-induced cell death. Such non-cycling cells may re-enter the proliferative state to form colonies of drug-sensitive cells. Long-term selection of cells with b-AP15 resulted in limited drug resistance (~2-fold) that could be reversed by buthionine sulphoximine, implying altered glutathione (GSH) metabolism as a resistance mechanism. In contrast, drug uptake and overexpression of drug efflux transporters were found not to be associated with b-AP15 resistance. CONCLUSIONS:The proteasome DUB inhibitors b-AP15/VLX1570 are cell cycle-active. The slow and incomplete development of resistance towards these compounds is an attractive feature in view of future clinical use.
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- 2019
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37. Nilotinib interferes with cell cycle, ABC transporters and JAK-STAT signaling pathway in CD34+/lin- cells of patients with chronic phase chronic myeloid leukemia after 12 months of treatment.
- Author
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Alessandra Trojani, Ester Pungolino, Alessandra Dal Molin, Milena Lodola, Giuseppe Rossi, Mariella D'Adda, Alessandra Perego, Chiara Elena, Mauro Turrini, Lorenza Borin, Cristina Bucelli, Simona Malato, Maria Cristina Carraro, Francesco Spina, Maria Luisa Latargia, Salvatore Artale, Pierangelo Spedini, Michela Anghilieri, Barbara Di Camillo, Giacomo Baruzzo, Gabriella De Canal, Alessandra Iurlo, Enrica Morra, and Roberto Cairoli
- Subjects
Medicine ,Science - Abstract
Chronic myeloid leukemia (CML) is characterized by the constitutive tyrosine kinase activity of the oncoprotein BCR-ABL1 in myeloid progenitor cells that activates multiple signal transduction pathways leading to the leukemic phenotype. The tyrosine-kinase inhibitor (TKI) nilotinib inhibits the tyrosine kinase activity of BCR-ABL1 in CML patients. Despite the success of nilotinib treatment in patients with chronic-phase (CP) CML, a population of Philadelphia-positive (Ph+) quiescent stem cells escapes the drug activity and can lead to drug resistance. The molecular mechanism by which these quiescent cells remain insensitive is poorly understood. The aim of this study was to compare the gene expression profiling (GEP) of bone marrow (BM) CD34+/lin- cells from CP-CML patients at diagnosis and after 12 months of nilotinib treatment by microarray, in order to identify gene expression changes and the dysregulation of pathways due to nilotinib action. We selected BM CD34+/lin- cells from 78 CP-CML patients at diagnosis and after 12 months of first-line nilotinib therapy and microarray analysis was performed. GEP bioinformatic analyses identified 2,959 differently expressed probes and functional clustering determined some significantly enriched pathways between diagnosis and 12 months of nilotinib treatment. Among these pathways, we observed the under expression of 26 genes encoding proteins belonging to the cell cycle after 12 months of nilotinib treatment which led to the up-regulation of chromosome replication, cell proliferation, DNA replication, and DNA damage checkpoint at diagnosis. We demonstrated the under expression of the ATP-binding cassette (ABC) transporters ABCC4, ABCC5, and ABCD3 encoding proteins which pumped drugs out of the cells after 12 months of nilotinib. Moreover, GEP data demonstrated the deregulation of genes involved in the JAK-STAT signaling pathway. The down-regulation of JAK2, IL7, STAM, PIK3CA, PTPN11, RAF1, and SOS1 key genes after 12 months of nilotinib could demonstrate the up-regulation of cell cycle, proliferation and differentiation via MAPK and PI3K-AKT signaling pathways at diagnosis.
- Published
- 2019
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38. Hereditary angioedema: Assessing the hypothesis for underlying autonomic dysfunction.
- Author
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Maddalena A Wu, Francesco Casella, Francesca Perego, Chiara Suffritti, Nada Afifi Afifi, Eleonora Tobaldini, Andrea Zanichelli, Chiara Cogliati, Nicola Montano, and Marco Cicardi
- Subjects
Medicine ,Science - Abstract
Attacks of Hereditary Angioedema due to C1-inhibitor deficiency (C1-INH-HAE)are often triggered by stressful events/hormonal changes.Our study evaluates the relationship between autonomic nervous system (ANS) and contact/complement system activation.Twenty-three HAE patients (6 males, mean age 47.5±11.4 years) during remission and 24 healthy controls (8 males, mean age 45.3±10.6 years) were studied. ECG, beat-by-beat blood pressure, respiratory activity were continuously recorded during rest (10') and 75-degrees-head-up tilt (10'). C1-INH, C4, cleaved high molecular weight kininogen (cHK) were assessed; in 16 patients and 11 controls plasma catecholamines were also evaluated. Spectral analysis of heart rate variability allowed extraction of low-(LF) and high-(HF) frequency components, markers of sympathetic and vagal modulation respectively.HAE patients showed higher mean systolic arterial pressure (SAP) than controls during both rest and tilt. Tilt induced a significant increase in SAP and its variability only in controls. Although sympathetic modulation (LFnu) increased significantly with tilt in both groups, LF/HF ratio, index of sympathovagal balance, increased significantly only in controls. At rest HAE patients showed higher noradrenaline values (301.4±132.9 pg/ml vs 210.5±89.6pg/ml, p = 0.05). Moreover, in patients tilt was associated with a significant increase in cHK, marker of contact system activation (49.5 ± 7.5% after T vs 47.1 ± 7.8% at R, p = 0.01).Our data are consistent with altered ANS modulation in HAE patients, i.e. increased sympathetic activation at rest and blunted response to orthostatic challenge. Tilt test-induced increased HK cleavage suggests a link between stress and bradykinin production.
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- 2017
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39. Exploring the Y Chromosomal Ancestry of Modern Panamanians.
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Viola Grugni, Vincenza Battaglia, Ugo Alessandro Perego, Alessandro Raveane, Hovirag Lancioni, Anna Olivieri, Luca Ferretti, Scott R Woodward, Juan Miguel Pascale, Richard Cooke, Natalie Myres, Jorge Motta, Antonio Torroni, Alessandro Achilli, and Ornella Semino
- Subjects
Medicine ,Science - Abstract
Geologically, Panama belongs to the Central American land-bridge between North and South America crossed by Homo sapiens >14 ka ago. Archaeologically, it belongs to a wider Isthmo-Colombian Area. Today, seven indigenous ethnic groups account for 12.3% of Panama's population. Five speak Chibchan languages and are characterized by low genetic diversity and a high level of differentiation. In addition, no evidence of differential structuring between maternally and paternally inherited genes has been reported in isthmian Chibchan cultural groups. Recent data have shown that 83% of the Panamanian general population harbour mitochondrial DNAs (mtDNAs) of Native American ancestry. Considering differential male/female mortality at European contact and multiple degrees of geographical and genetic isolation over the subsequent five centuries, the Y-chromosome Native American component is expected to vary across different geographic regions and communities in Panama. To address this issue, we investigated Y-chromosome variation in 408 modern males from the nine provinces of Panama and one indigenous territory (the comarca of Kuna Yala). In contrast to mtDNA data, the Y-chromosome Native American component (haplogroup Q) exceeds 50% only in three populations facing the Caribbean Sea: the comarca of Kuna Yala and Bocas del Toro province where Chibchan languages are spoken by the majority, and the province of Colón where many Kuna and people of mixed indigenous-African-and-European descent live. Elsewhere the Old World component is dominant and mostly represented by western Eurasian haplogroups, which signal the strong male genetic impact of invaders. Sub-Saharan African input accounts for 5.9% of male haplotypes. This reflects the consequences of the colonial Atlantic slave trade and more recent influxes of West Indians of African heritage. Overall, our findings reveal a local evolution of the male Native American ancestral gene pool, and a strong but geographically differentiated unidirectional sex bias in the formation of local modern Panamanian populations.
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- 2015
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40. p53-dependent activation of microRNA-34a in response to etoposide-induced DNA damage in osteosarcoma cell lines not impaired by dominant negative p53 expression.
- Author
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Chiara Novello, Laura Pazzaglia, Amalia Conti, Irene Quattrini, Serena Pollino, Paola Perego, Piero Picci, and Maria Serena Benassi
- Subjects
Medicine ,Science - Abstract
Osteosarcoma (OS) is the most common primary malignant bone tumor and prevalently occurs in the second decade of life. Etoposide, a chemotherapeutic agent used in combined treatments of recurrent human OS, belongs to the topoisomerase inhibitor family and causes DNA breakage. In this study we evaluated the cascade of events determined by etoposide-induced DNA damage in OS cell lines with different p53 status focusing on methylation status and expression of miR-34a that modulate tumor cell growth and cell cycle progression. Wild-type p53 U2-OS cells and U2-OS cells expressing dominant-negative form of p53 (U2- OS175) were more sensitive to etoposide than p53-deficient MG63 and Saos-2 cells, showing increased levels of unmethylated miR-34a, reduced expression of CDK4 and cell cycle arrest in G1 phase. In contrast, MG63 and Saos-2 cell lines presented aberrant methylation of miR-34a promoter gene with no miR-34a induction after etoposide treatment, underlining the close connection between p53 expression and miR-34a methylation status. Consistently, in p53siRNA transfected U2-OS cells we observed loss of miR-34a induction after etoposide exposure associated with a partial gain of gene methylation and cell cycle progress towards G2/M phase. Our results suggest that the open and unmethylated conformation of the miR-34a gene may be regulated by p53 able to bind the gene promoter. In conclusion, cell response to etoposide-induced DNA damage was not compromised in cells with dominant-negative p53 expression.
- Published
- 2014
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41. Altered insulin receptor signalling and β-cell cycle dynamics in type 2 diabetes mellitus.
- Author
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Franco Folli, Terumasa Okada, Carla Perego, Jenny Gunton, Chong Wee Liew, Masaru Akiyama, Anna D'Amico, Stefano La Rosa, Claudia Placidi, Roberto Lupi, Piero Marchetti, Giorgio Sesti, Marc Hellerstein, Lucia Perego, and Rohit N Kulkarni
- Subjects
Medicine ,Science - Abstract
Insulin resistance, reduced β-cell mass, and hyperglucagonemia are consistent features in type 2 diabetes mellitus (T2DM). We used pancreas and islets from humans with T2DM to examine the regulation of insulin signaling and cell-cycle control of islet cells. We observed reduced β-cell mass and increased α-cell mass in the Type 2 diabetic pancreas. Confocal microscopy, real-time PCR and western blotting analyses revealed increased expression of PCNA and down-regulation of p27-Kip1 and altered expression of insulin receptors, insulin receptor substrate-2 and phosphorylated BAD. To investigate the mechanisms underlying these findings, we examined a mouse model of insulin resistance in β-cells--which also exhibits reduced β-cell mass, the β-cell-specific insulin receptor knockout (βIRKO). Freshly isolated islets and β-cell lines derived from βIRKO mice exhibited poor cell-cycle progression, nuclear restriction of FoxO1 and reduced expression of cell-cycle proteins favoring growth arrest. Re-expression of insulin receptors in βIRKO β-cells reversed the defects and promoted cell cycle progression and proliferation implying a role for insulin-signaling in β-cell growth. These data provide evidence that human β- and α-cells can enter the cell-cycle, but proliferation of β-cells in T2DM fails due to G1-to-S phase arrest secondary to defective insulin signaling. Activation of insulin signaling, FoxO1 and proteins in β-cell-cycle progression are attractive therapeutic targets to enhance β-cell regeneration in the treatment of T2DM.
- Published
- 2011
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42. The first peopling of South America: new evidence from Y-chromosome haplogroup Q.
- Author
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Vincenza Battaglia, Viola Grugni, Ugo Alessandro Perego, Norman Angerhofer, J Edgar Gomez-Palmieri, Scott Ray Woodward, Alessandro Achilli, Natalie Myres, Antonio Torroni, and Ornella Semino
- Subjects
Medicine ,Science - Abstract
Recent progress in the phylogenetic resolution of the Y-chromosome phylogeny permits the male demographic dynamics and migratory events that occurred in Central and Southern America after the initial human spread into the Americas to be investigated at the regional level. To delve further into this issue, we examined more than 400 Native American Y chromosomes (collected in the region ranging from Mexico to South America) belonging to haplogroup Q - virtually the only branch of the Y phylogeny observed in modern-day Amerindians of Central and South America - together with 27 from Mongolia and Kamchatka. Two main founding lineages, Q1a3a1a-M3 and Q1a3a1-L54(xM3), were detected along with novel sub-clades of younger age and more restricted geographic distributions. The first was also observed in Far East Asia while no Q1a3a1-L54(xM3) Y chromosome was found in Asia except the southern Siberian-specific sub-clade Q1a3a1c-L330. Our data not only confirm a southern Siberian origin of ancestral populations that gave rise to Paleo-Indians and the differentiation of both Native American Q founding lineages in Beringia, but support their concomitant arrival in Mesoamerica, where Mexico acted as recipient for the first wave of migration, followed by a rapid southward migration, along the Pacific coast, into the Andean region. Although Q1a3a1a-M3 and Q1a3a1-L54(xM3) display overlapping general distributions, they show different patterns of evolution in the Mexican plateau and the Andean area, which can be explained by local differentiations due to demographic events triggered by the introduction of agriculture and associated with the flourishing of the Great Empires.
- Published
- 2013
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43. Mitogenomes from two uncommon haplogroups mark late glacial/postglacial expansions from the near east and neolithic dispersals within Europe.
- Author
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Anna Olivieri, Maria Pala, Francesca Gandini, Baharak Hooshiar Kashani, Ugo A Perego, Scott R Woodward, Viola Grugni, Vincenza Battaglia, Ornella Semino, Alessandro Achilli, Martin B Richards, and Antonio Torroni
- Subjects
Medicine ,Science - Abstract
The current human mitochondrial (mtDNA) phylogeny does not equally represent all human populations but is biased in favour of representatives originally from north and central Europe. This especially affects the phylogeny of some uncommon West Eurasian haplogroups, including I and W, whose southern European and Near Eastern components are very poorly represented, suggesting that extensive hidden phylogenetic substructure remains to be uncovered. This study expanded and re-analysed the available datasets of I and W complete mtDNA genomes, reaching a comprehensive 419 mitogenomes, and searched for precise correlations between the ages and geographical distributions of their numerous newly identified subclades with events of human dispersal which contributed to the genetic formation of modern Europeans. Our results showed that haplogroups I (within N1a1b) and W originated in the Near East during the Last Glacial Maximum or pre-warming period (the period of gradual warming between the end of the LGM, ∼19 ky ago, and the beginning of the first main warming phase, ∼15 ky ago) and, like the much more common haplogroups J and T, may have been involved in Late Glacial expansions starting from the Near East. Thus our data contribute to a better definition of the Late and postglacial re-peopling of Europe, providing further evidence for the scenario that major population expansions started after the Last Glacial Maximum but before Neolithic times, but also evidencing traces of diffusion events in several I and W subclades dating to the European Neolithic and restricted to Europe.
- Published
- 2013
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44. Phylogenetic relationships of three Italian merino-derived sheep breeds evaluated through a complete mitogenome analysis.
- Author
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Hovirag Lancioni, Piera Di Lorenzo, Simone Ceccobelli, Ugo A Perego, Arianna Miglio, Vincenzo Landi, Maria T Antognoni, Francesca M Sarti, Emiliano Lasagna, and Alessandro Achilli
- Subjects
Medicine ,Science - Abstract
In Italy, the crisis of the wool industry triggered the necessity to reconvert the two traditional Merino-derived breeds, Gentile di Puglia and Sopravissana, to meat production, by creating the Merinizzata Italiana. The aim of the present study was to assess the genetic diversity of these three Italian Merino-derived (IMd) breeds by examining the molecular information encoded in the maternally-inherited mitochondrial DNA (mtDNA). A parallel molecular investigation was performed on the putative paternal and maternal breeds, the Merino from Spain and the Appenninica from Italy, respectively, as well as on three unrelated dairy breeds (Sarda and Comisana from Italy, and Lacaune from France). Firstly, the mtDNA control region of 291 samples was analyzed. When comparing the overall genetic distances among the eight stocks, the three IMd breeds clustered together close to the Appenninica, thus confirming its parental role. Among the 90 IMd samples, 82 different haplotypes were observed, almost all belonging to haplogroup B, and only one to A. For 23 mtDNAs, including nine IMd, the analysis was then brought to the level of entire mitogenomes. Three distinct sub-haplogroups within B were found to encompass the IMd samples, with one clade (B1a2a1) apparently restricted to those sheep. Thus, despite experiencing a drastic reduction in number (mainly due to changes in breeding practices driven by the economy), the IMd breeds still represent a reservoir of distinctive mitochondrial variants, which could potentially contribute to the development of conservation and management programs of Italian sheep breeds.
- Published
- 2013
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45. Inside the 'African cattle complex': animal burials in the holocene central Sahara.
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Savino di Lernia, Mary Anne Tafuri, Marina Gallinaro, Francesca Alhaique, Marie Balasse, Lucia Cavorsi, Paul D Fullagar, Anna Maria Mercuri, Andrea Monaco, Alessandro Perego, and Andrea Zerboni
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Medicine ,Science - Abstract
Cattle pastoralism is an important trait of African cultures. Ethnographic studies describe the central role played by domestic cattle within many societies, highlighting its social and ideological value well beyond its mere function as 'walking larder'. Historical depth of this African legacy has been repeatedly assessed in an archaeological perspective, mostly emphasizing a continental vision. Nevertheless, in-depth site-specific studies, with a few exceptions, are lacking. Despite the long tradition of a multi-disciplinary approach to the analysis of pastoral systems in Africa, rarely do early and middle Holocene archaeological contexts feature in the same area the combination of settlement, ceremonial and rock art features so as to be multi-dimensionally explored: the Messak plateau in the Libyan central Sahara represents an outstanding exception. Known for its rich Pleistocene occupation and abundant Holocene rock art, the region, through our research, has also shown to preserve the material evidence of a complex ritual dated to the Middle Pastoral (6080-5120 BP or 5200-3800 BC). This was centred on the frequent deposition in stone monuments of disarticulated animal remains, mostly cattle. Animal burials are known also from other African contexts, but regional extent of the phenomenon, state of preservation of monuments, and associated rock art make the Messak case unique. GIS analysis, excavation data, radiocarbon dating, zooarchaeological and isotopic (Sr, C, O) analyses of animal remains, and botanical information are used to explore this highly formalized ritual and the lifeways of a pastoral community in the Holocene Sahara.
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- 2013
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46. Molecular dissection of the basal clades in the human Y chromosome phylogenetic tree.
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Rosaria Scozzari, Andrea Massaia, Eugenia D'Atanasio, Natalie M Myres, Ugo A Perego, Beniamino Trombetta, and Fulvio Cruciani
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Medicine ,Science - Abstract
One hundred and forty-six previously detected mutations were more precisely positioned in the human Y chromosome phylogeny by the analysis of 51 representative Y chromosome haplogroups and the use of 59 mutations from literature. Twenty-two new mutations were also described and incorporated in the revised phylogeny. This analysis made it possible to identify new haplogroups and to resolve a deep trifurcation within haplogroup B2. Our data provide a highly resolved branching in the African-specific portion of the Y tree and support the hypothesis of an origin in the north-western quadrant of the African continent for the human MSY diversity.
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- 2012
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47. Arrival of Paleo-Indians to the southern cone of South America: new clues from mitogenomes.
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Michelle de Saint Pierre, Francesca Gandini, Ugo A Perego, Martin Bodner, Alberto Gómez-Carballa, Daniel Corach, Norman Angerhofer, Scott R Woodward, Ornella Semino, Antonio Salas, Walther Parson, Mauricio Moraga, Alessandro Achilli, Antonio Torroni, and Anna Olivieri
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Medicine ,Science - Abstract
With analyses of entire mitogenomes, studies of Native American mitochondrial DNA (MTDNA) variation have entered the final phase of phylogenetic refinement: the dissection of the founding haplogroups into clades that arose in America during and after human arrival and spread. Ages and geographic distributions of these clades could provide novel clues on the colonization processes of the different regions of the double continent. As for the Southern Cone of South America, this approach has recently allowed the identification of two local clades (D1g and D1j) whose age estimates agree with the dating of the earliest archaeological sites in South America, indicating that Paleo-Indians might have reached that region from Beringia in less than 2000 years. In this study, we sequenced 46 mitogenomes belonging to two additional clades, termed B2i2 (former B2l) and C1b13, which were recently identified on the basis of mtDNA control-region data and whose geographical distributions appear to be restricted to Chile and Argentina. We confirm that their mutational motifs most likely arose in the Southern Cone region. However, the age estimate for B2i2 and C1b13 (11-13,000 years) appears to be younger than those of other local clades. The difference could reflect the different evolutionary origins of the distinct South American-specific sub-haplogroups, with some being already present, at different times and locations, at the very front of the expansion wave in South America, and others originating later in situ, when the tribalization process had already begun. A delayed origin of a few thousand years in one of the locally derived populations, possibly in the central part of Chile, would have limited the geographical and ethnic diffusion of B2i2 and explain the present-day occurrence that appears to be mainly confined to the Tehuelche and Araucanian-speaking groups.
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- 2012
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48. Decrypting the mitochondrial gene pool of modern Panamanians.
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Ugo A Perego, Hovirag Lancioni, Maribel Tribaldos, Norman Angerhofer, Jayne E Ekins, Anna Olivieri, Scott R Woodward, Juan Miguel Pascale, Richard Cooke, Jorge Motta, and Alessandro Achilli
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Medicine ,Science - Abstract
The Isthmus of Panama--the narrow neck of land connecting the northern and southern American landmasses--was an obligatory corridor for the Paleo-Indians as they moved into South America. Archaeological evidence suggests an unbroken link between modern natives and their Paleo-Indian ancestors in some areas of Panama, even if the surviving indigenous groups account for only 12.3% of the total population. To evaluate if modern Panamanians have retained a larger fraction of the native pre-Columbian gene pool in their maternally-inherited mitochondrial genome, DNA samples and historical records were collected from more than 1500 volunteer participants living in the nine provinces and four indigenous territories of the Republic. Due to recent gene-flow, we detected ~14% African mitochondrial lineages, confirming the demographic impact of the Atlantic slave trade and subsequent African immigration into Panama from Caribbean islands, and a small European (~2%) component, indicating only a minor influence of colonialism on the maternal side. The majority (~83%) of Panamanian mtDNAs clustered into native pan-American lineages, mostly represented by haplogroup A2 (51%). These findings reveal an overwhelming native maternal legacy in today's Panama, which is in contrast with the overall concept of personal identity shared by many Panamanians. Moreover, the A2 sub-clades A2ad and A2af (with the previously named 6 bp Huetar deletion), when analyzed at the maximum level of resolution (26 entire mitochondrial genomes), confirm the major role of the Pacific coastal path in the peopling of North, Central and South America, and testify to the antiquity of native mitochondrial genomes in Panama.
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- 2012
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49. Effects of weight loss in metabolically healthy obese subjects after laparoscopic adjustable gastric banding and hypocaloric diet.
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Giorgio Sesti, Franco Folli, Lucia Perego, Marta Letizia Hribal, and Antonio E Pontiroli
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Medicine ,Science - Abstract
Weight loss in metabolically healthy obese (MHO) subjects may result in deterioration of cardio-metabolic risk profile. We analyzed the effects of weight loss induced by laparoscopic adjustable gastric banding (LAGB) on cardio-metabolic risk factors in MHO and insulin resistant obese (IRO) individuals. This study included 190 morbidly obese non-diabetic subjects. Obese individuals were stratified on the basis of their insulin sensitivity index (ISI), estimated from an OGTT, into MHO (ISI index in the upper quartile) and IRO (ISI in the three lower quartiles). Anthropometric and cardio-metabolic variables were measured at baseline and 6-months after LAGB. Six months after LAGB, anthropometric measures were significantly reduced in both MHO and IRO. Percent changes in body weight, BMI, and waist circumference did not differ between the two groups. Fasting glucose and insulin levels, triglycerides, AST, and ALT were significantly reduced, and HDL cholesterol significantly increased, in both MHO and IRO subjects with no differences in percent changes from baseline. Insulin sensitivity increased in both MHO and IRO group. Insulin secretion was significantly reduced in the IRO group only. However, the disposition index significantly increased in both MHO and IRO individuals with no differences in percent changes from baseline between the two groups. The change in insulin sensitivity correlated with the change in BMI (r = -0.43; P
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- 2011
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50. Mitochondrial DNA backgrounds might modulate diabetes complications rather than T2DM as a whole.
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Alessandro Achilli, Anna Olivieri, Maria Pala, Baharak Hooshiar Kashani, Valeria Carossa, Ugo A Perego, Francesca Gandini, Aurelia Santoro, Vincenza Battaglia, Viola Grugni, Hovirag Lancioni, Cristina Sirolla, Anna Rita Bonfigli, Antonella Cormio, Massimo Boemi, Ivano Testa, Ornella Semino, Antonio Ceriello, Liana Spazzafumo, Maria Nicola Gadaleta, Maurizio Marra, Roberto Testa, Claudio Franceschi, and Antonio Torroni
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Medicine ,Science - Abstract
Mitochondrial dysfunction has been implicated in rare and common forms of type 2 diabetes (T2DM). Additionally, rare mitochondrial DNA (mtDNA) mutations have been shown to be causal for T2DM pathogenesis. So far, many studies have investigated the possibility that mtDNA variation might affect the risk of T2DM, however, when found, haplogroup association has been rarely replicated, even in related populations, possibly due to an inadequate level of haplogroup resolution. Effects of mtDNA variation on diabetes complications have also been proposed. However, additional studies evaluating the mitochondrial role on both T2DM and related complications are badly needed. To test the hypothesis of a mitochondrial genome effect on diabetes and its complications, we genotyped the mtDNAs of 466 T2DM patients and 438 controls from a regional population of central Italy (Marche). Based on the most updated mtDNA phylogeny, all 904 samples were classified into 57 different mitochondrial sub-haplogroups, thus reaching an unprecedented level of resolution. We then evaluated whether the susceptibility of developing T2DM or its complications differed among the identified haplogroups, considering also the potential effects of phenotypical and clinical variables. MtDNA backgrounds, even when based on a refined haplogroup classification, do not appear to play a role in developing T2DM despite a possible protective effect for the common European haplogroup H1, which harbors the G3010A transition in the MTRNR2 gene. In contrast, our data indicate that different mitochondrial haplogroups are significantly associated with an increased risk of specific diabetes complications: H (the most frequent European haplogroup) with retinopathy, H3 with neuropathy, U3 with nephropathy, and V with renal failure.
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- 2011
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