86 results on '"Nan CHEN"'
Search Results
2. Vagal predominance correlates with mood state changes of winter-over expeditioners during prolonged Antarctic residence.
- Author
-
Shiying Liu, Jianan Wang, Shaoling Chen, Jiamin Chai, Jigang Wen, Xuan Tian, Nan Chen, and Chengli Xu
- Subjects
Medicine ,Science - Abstract
ObjectiveWinter-over expeditioners in Antarctica are challenged by various environmental and psycho-social stress factors, which may induce psychophysiological changes. The autonomic nervous system (ANS) plays a crucial role in the adaptation process under stress. However, the relationship between ANS activity and the mood states of expeditioners remains largely unexplored. This study aims to uncover the pattern of ANS adjustment under extreme Antarctic environments and provide new insights into the correlations between ANS activity and mood state changes, which may provide scientific data for medical interventions.MethodsFourteen expeditioners at Zhongshan Station participated in this study. The study was conducted during four representative periods: pre-Antarctica, Antarctica-1 (pre-winter), Antarctica-2 (winter), and Antarctica-3 (summer). The heart rate variability (HRV) of the expeditioners was continuously measured for 24 hours to evaluate ANS activity. Plasma levels of catecholamines were tested by ELISA. Mood states were assessed by the Profile of Mood States (POMS) scale.ResultsHRV analysis showed a disturbance of ANS during winter and summer periods. For frequency domain parameters, very low frequency (VLF), low frequency (LF), high frequency (HF), and total power (TP) significantly increased during the second half of the mission. Especially, LF/HF ratio decreased during summer, indicating the predominance of vagal tone. Results of the time domain analysis showed increased heart rate variability during the austral winter and summer. Plasma epinephrine (E) significantly increased during residence in Antarctica. Compared with pre-Antarctica, the vigor, depression, and anger scores of the expeditioners decreased significantly during the austral summer. Notably, the depression score showed a moderate positive correlation with LF/HF, while weak negative correlations with other HRV indicators, including TP, VLF, and LF. Anger score showed a moderate positive correlation with LF/HF and weak negative correlations with the average normal-to-normal (NN) interval, and the root mean square of differences between adjacent RR intervals (RMSSD). Plasma E level weakly correlated with the average NN interval.ConclusionProlonged residence in Antarctica increased the ANS activities and shifted the cardiac autonomic modulation towards vagal predominance. The alteration of HRV correlated with mood states and plasma epinephrine levels.
- Published
- 2024
- Full Text
- View/download PDF
3. The clinicopathological features and prognosis of primary pulmonary lymphoepithelioma-like carcinoma: A systematic review and meta-analysis.
- Author
-
Liansha Tang, Nan Chen, Wenbo He, Jian Zhou, Jinjue Zhang, Zhangyu Lin, Zihuai Wang, Jianqi Hao, and Feng Lin
- Subjects
Medicine ,Science - Abstract
BackgroundPrimary pulmonary lymphoepithelioma-like carcinoma (PPLELC) was a sparse subtype of unclassified lung cancer. The clinicopathologic features, prognostic factors and multimodality treatment regimens of LELC remain inconclusive. We conducted this systematic review and meta-analysis to address this deficit in current knowledge.MethodsWe searched PubMed, Embase, and Web of Science to filtrate studies investigating on clinical features and prognostic factors of LELC up to Sep 9th, 2020. Fixed and random effect models were generated to present the incorporated hazard ratios (HR) and odds ratios (OR) with 95% confidence intervals (CI). The quality and heterogeneity of the included studies were also evaluated carefully.ResultsThis systematic review and meta-analysis included 13 retrospective studies with a total of 1294 patients. The incidence of programmed cell death-ligand 1 (PD-L1) expression in PPLELC varied from 63.3% to 75.8%. Positive PD-L1 expression was more likely to be found in patients under 60 years old (OR = 2.16, 95%CI: 1.19-3.89, P = 0.01) and was associated with worse disease-free survival (DFS) compared with negative PD-L1 expression (HR = 2.99, 95%CI: 1.23-7.28, P = 0.02). The pooled results showed that stage was the prognostic factor for both overall survival (OS) and DFS. Moreover, a significantly better outcome of PPLELC was observed in men (HR = 0.56, 95%CI: 0.33-0.95, P = 0.03) and patients who received radiation (HR = 0.46, 95%CI: 0.22-0.96, P = 0.04).ConclusionPD-L1 expression was high in PPLELC patients. It was significantly associated with age under 60 and the unfavorable DFS. Stage and gender could be the prognostic factor for OS. Radiation could be the effective therapy for PPLELC.
- Published
- 2020
- Full Text
- View/download PDF
4. Solid-phase microextraction-based cuticular hydrocarbon profiling for intraspecific delimitation in Acyrthosiphon pisum.
- Author
-
Nan Chen, Yu Bai, Yong-Liang Fan, and Tong-Xian Liu
- Subjects
Medicine ,Science - Abstract
Insect cuticular hydrocarbons (CHCs) play critical roles in reducing water loss and chemical communication. Species-specific CHC profiles have been used increasingly as an excellent character for species classification. However, considerably less is known about their potential for population delimitation within species. The aims of this study were to develop a solid-phase microextraction (SPME)-based CHC collection method and to investigate whether CHC profiles could serve as potential chemotaxonomic tools for intraspecific delimitation in Acyrthosiphon pisum. Optimization of fibers for SPME sampling revealed that 7 μm polydimethylsiloxane (PDMS) demonstrated the most efficient adsorption of CHCs among five different tested fibers. SPME sampling showed good reproducibility with repeated collections of CHCs from a single aphid. Validation of SPME was performed by comparing CHC profiles with those from conventional hexane extractions. The two methods showed no qualitative differences in CHCs, although SPME appeared to extract relatively fewer short-chained CHCs. While CHC profiles of a given population differed among developmental stages, wing dimorphism types, and host plants, wingless adult aphids showed very low variance in relative proportions of individual CHC components. Reproducibility of CHC profiles was explored further to classify wingless adult morphs of A. pisum from five different geographic regions that showed no variation in mitochondrial COI gene sequences. Our results demonstrate that CHC profiles are useful in intraspecific delimitation in the field of insect chemotaxonomy.
- Published
- 2017
- Full Text
- View/download PDF
5. Genotype: A Crucial but Not Unique Factor Affecting the Clinical Phenotypes in Fabry Disease.
- Author
-
Xiaoxia Pan, Yan Ouyang, Zhaohui Wang, Hong Ren, Pingyan Shen, Weiming Wang, Yaowen Xu, Liyan Ni, Xialian Yu, Xiaonong Chen, Wen Zhang, Li Yang, Xiao Li, Jing Xu, and Nan Chen
- Subjects
Medicine ,Science - Abstract
Numerous α-galactosidase A (α-gal A) gene (GLA) mutations have been identified in Fabry disease (FD), but studies on genotype-phenotype correlation are limited. This study evaluated the features of GLA gene mutations and genotype-phenotype relationship in Chinese FD patients. Gene sequencing results, demographic information, clinical history, and laboratory findings were collected from 73 Chinese FD patients. Totally 47 mutations were identified, including 23 novel mutations which might be pathogenic. For male patients, those with frameshift and nonsense mutations presented the classical FD, whereas those with missense mutations presented both of classical and atypical phenotypes. Interestingly, two male patients with missense mutation p.R356G from two unrelated families, and two with p.R301Q from one family presented different phenotypes. A statistically significant association was found between the levels of α-gal A enzyme activity and ocular changes in males, though no significant association was found between residual enzyme activity level and genotype or clinical phenotypes. For female patients, six out of seven with frameshift mutations and one out of nine with missense mutation presented the classical FD, and α-gal A activity in those patients was found to be significantly lower than that of patients with atypical phenotypes (13.73 vs. 46.32 nmol/ml/h/mg). Our findings suggest that the α-gal A activity might be associated with the clinical severity in female patients with FD. But no obvious associations between activity level of α-gal A and genotype or clinical phenotypes were found for male patients.
- Published
- 2016
- Full Text
- View/download PDF
6. Underweight Is an Independent Risk Factor for Renal Function Deterioration in Patients with IgA Nephropathy.
- Author
-
Yan Ouyang, Jingyuan Xie, Meng Yang, Xiaoyan Zhang, Hong Ren, Weiming Wang, and Nan Chen
- Subjects
Medicine ,Science - Abstract
Studies on the relationship between body mass index (BMI) and renal progression in IgA Nephropathy (IgAN) were limited, especially for underweight patients with IgAN. To elucidate the clinical features and effect of underweight on renal function deterioration in this disease, we recruited IgAN patients with diagnostic age ≥18 years old and a baseline estimated glomerular filtration rate (eGFR) ≥15 ml/min/1.73m2 from our center between 1985 and 2014. Patients secondary to systemic diseases or follow-up less than 6 months were excluded. All patients' clinical data at renal biopsy and during follow-up were recorded. Renal outcome was defined as end-stage kidney disease (ESRD). Baseline body mass index (BMI) was calculated by weight (kg) over squared height (m2). According to WHO Asian guideline, BMI was categorized as follows:
- Published
- 2016
- Full Text
- View/download PDF
7. Phylogeny of Morella rubra and Its Relatives (Myricaceae) and Genetic Resources of Chinese Bayberry Using RAD Sequencing.
- Author
-
Luxian Liu, Xinjie Jin, Nan Chen, Xian Li, Pan Li, and Chengxin Fu
- Subjects
Medicine ,Science - Abstract
Phylogenetic relationships among Chinese species of Morella (Myricaceae) are unresolved. Here, we use restriction site-associated DNA sequencing (RAD-seq) to identify candidate loci that will help in determining phylogenetic relationships among Morella rubra, M. adenophora, M. nana and M. esculenta. Three methods for inferring phylogeny, maximum parsimony (MP), maximum likelihood (ML) and Bayesian concordance, were applied to data sets including as many as 4253 RAD loci with 8360 parsimony informative variable sites. All three methods significantly favored the topology of (((M. rubra, M. adenophora), M. nana), M. esculenta). Two species from North America (M. cerifera and M. pensylvanica) were placed as sister to the four Chinese species. According to BEAST analysis, we deduced speciation of M. rubra to be at about the Miocene-Pliocene boundary (5.28 Ma). Intraspecific divergence in M. rubra occurred in the late Pliocene (3.39 Ma). From pooled data, we assembled 29378, 21902 and 23552 de novo contigs with an average length of 229, 234 and 234 bp for M. rubra, M. nana and M. esculenta respectively. The contigs were used to investigate functional classification of RAD tags in a BLASTX search. Additionally, we identified 3808 unlinked SNP sites across the four populations of M. rubra and discovered genes associated with fruit ripening and senescence, fruit quality and disease/defense metabolism based on KEGG database.
- Published
- 2015
- Full Text
- View/download PDF
8. Significant reduction of antibiotic consumption and patients' costs after an action plan in China, 2010-2014.
- Author
-
Lidao Bao, Rui Peng, Yi Wang, Ruilian Ma, Xianhua Ren, Wenbin Meng, Fusheng Sun, Junxia Fang, Ping Chen, Yang Wang, Qiuhong Chen, Jian Cai, Jian Jin, Jinhui Guo, Shucheng Yang, Xiaomei Mo, Enjing Zhang, Yuerong Zhang, Zhaoxin Lu, Binbin Chen, Xiujuan Yue, Meijun Zhu, Yingying Wang, Xinchao Li, Yuan Bian, Shaoshan Kong, Wenfei Pan, Qian Ding, Jun Cao, Rupin Liu, Nan Chen, Xuelian Huang, Agula B, and Haijun Lyu
- Subjects
Medicine ,Science - Abstract
On July 1, 2011, the Chinese government launched a national Action Plan for antibiotic stewardship targeting antibiotic misuse in public hospitals. The aim of this study was to evaluate the impacts of the Action Plan in terms of frequency and intensity of antibiotic utilization and patients costs in public general hospitals.Administrative pharmacy data from July 2010 to June 2014 were sampled from 65 public general hospitals and divided into three segments: (1) July 2010 to June 2011 as the preparation period; (2) July 2011 to June 2012 as the intervention period; and (3) July 2012 to June 2014 as the assessment period. The outcome measures included (1) antibiotic prescribing rates; (2) intensity of antibiotic consumption; (3) patients costs; and (4) duration of peri-operative antibiotic treatment in clean surgeries of thyroidectomy, breast, hernia, and orthopedic procedures. Longitudinal and cross-sectional analyses were conducted.Longitudinal analyses showed significant trend changes in the frequency and intensity of antibiotic consumption, the patients' costs on antibiotics, and the duration of antibiotic treatment received by surgical patients undergoing the 4 clean procedures during the intervention period. Cross-sectional analyses showed that the antibiotic prescribing rates were reduced to 35.3% and 12.9% in inpatient and outpatient settings, that the intensity of antibiotic consumption was reduced to 35.9 DDD/100 bed-days, that patients' costs on antibiotics were reduced significantly, and that the duration of peri-operative antibiotic treatment received by surgical patients undergoing the 4 types of clean procedures decreased to less than 24 hour during the assessment period.The Action Plan, as a combination of managerial and professional strategies, was effective in reducing the frequency and intensity of antibiotic consumption, patients' costs on antibiotics, and the duration of peri-operative antibiotic treatment in the 4 clean surgeries.
- Published
- 2015
- Full Text
- View/download PDF
9. Comparison of Glomerular Transcriptome Profiles of Adult-Onset Steroid Sensitive Focal Segmental Glomerulosclerosis and Minimal Change Disease.
- Author
-
Jun Tong, Jingyuan Xie, Hong Ren, Jian Liu, Weijia Zhang, Chengguo Wei, Jing Xu, Wen Zhang, Xiao Li, Weiming Wang, Danfeng Lv, John Cijiang He, and Nan Chen
- Subjects
Medicine ,Science - Abstract
To search for biomarkers to differentiate primary focal segmental glomerulosclerosis (FSGS) and minimal change disease (MCD).We isolated glomeruli from kidney biopsies of 6 patients with adult-onset steroid sensitiveFSGS and 5 patients with MCD, and compared the profiles of glomerular transcriptomes between the two groups of patients using microarray analysis.Analysis of differential expressed genes (DEGs) revealed that up-regulated DEGs in FSGS patients compared with MCD patients were primarily involved in spermatogenesis, gamete generation, regulation of muscle contraction, response to unfolded protein, cell proliferation and skeletal system development. The down-regulated DEGs were primarily related to metabolic process, intracellular transport, oxidation/reduction andestablishment of intracellular localization. We validated the expression of the top 6 up-regulated and top 6 down-regulated DEGs using real-time PCR. Membrane metallo-endopeptidase (MME) is a down-regulated gene that was previously identified as a key gene for kidney development. Immunostaining confirmed that the protein expression of MME decreased significantly in FSGS kidneys compared with MCD kidneys.This report was the first study to examine transcriptomes in Chinese patients with various glomerular diseases. Expressions of MME both in RNA and protein level decreased significantly in glomeruli of FSGS kidneys compared with MCD kidneys. Our data suggested that MME might play a role in the normal physiological function of podocytes and a decrease in MME expression might be related to podocyte injury. We also identified genes and pathways specific for FSGS versus MCD, and our data could help identify potential new biomarkers for the differential diagnosis between these two diseases.
- Published
- 2015
- Full Text
- View/download PDF
10. Large-Scale Transcriptome Analysis of Cucumber and Botrytis cinerea during Infection.
- Author
-
Weiwen Kong, Nan Chen, Tingting Liu, Jing Zhu, Jingqi Wang, Xiaoqing He, and Yi Jin
- Subjects
Medicine ,Science - Abstract
Cucumber gray mold caused by Botrytis cinerea is considered one of the most serious cucumber diseases. With the advent of Hi-seq technology, it is possible to study the plant-pathogen interaction at the transcriptome level. To the best of our knowledge, this is the first application of RNA-seq to identify cucumber and B. cinerea differentially expressed genes (DEGs) before and after the plant-pathogen interaction. In total, 248,908,688 raw reads were generated; after removing low-quality reads and those containing adapter and poly-N, 238,341,648 clean reads remained to map the reference genome. There were 3,512 cucumber DEGs and 1,735 B. cinerea DEGs. GO enrichment and KEGG enrichment analysis were performed on these DEGs to study the interaction between cucumber and B. cinerea. To verify the reliability and accuracy of our transcriptome data, 5 cucumber DEGs and 5 B. cinerea DEGs were chosen for RT-PCR verification. This is the first systematic transcriptome analysis of components related to the B. cinerea-cucumber interaction. Functional genes and putative pathways identified herein will increase our understanding of the mechanism of the pathogen-host interaction.
- Published
- 2015
- Full Text
- View/download PDF
11. Laparoscopic versus open hepatectomy with or without synchronous colectomy for colorectal liver metastasis: a meta-analysis.
- Author
-
MingTian Wei, YaZhou He, JiaRong Wang, Nan Chen, ZongGuang Zhou, and ZiQiang Wang
- Subjects
Medicine ,Science - Abstract
BACKGROUND: To compare short-term and long-term results of colorectal patients undergoing laparoscopic and open hepatectomy. Moreover, outcomes of laparoscopic versus open procedures for simultaneous primary colorectal tumor and liver metastasis resection were compared. METHODS: A systematic search was conducted in the PubMed and EmBase databases (until Oct. 22. 2013) with no limits. Bibliographic citation management software (EndNote X6) was used for extracted literature management. Quality assessment was performed according to a modification of the Newcastle-Ottawa Scale. The data were analyzed using Review Manager (Version 5.1), and sensitivity analysis was performed by sequentially omitting each study. RESULTS: Finally, 14 studies, including a total of 975 CLM (colorectal liver metastasis) patients, compared laparoscopic with open hepatectomy. 3 studies of them, including a total of 107 CLM patients, compared laparoscopic with open procedures for synchronous hepatectomy and colectomy. Laparoscopic hepatectomy was associated with a significantly less blood loss, shorter hospitalization time, and less operative transfusion rate. In addition, lower hospital morbidity rate (OR=0.57, 95%CI:0.42-0.78, P=0.0005) and better R0 resection (OR=2.44, 95%CI:1.21-4.94, P=0.01) were observed in laparoscopic hepatectomy. For long-term outcomes, there were no significant differences between two surgical procedures on recurrence and overall survival. In comparison of synchronous hepatectomy and colectomy, laparoscopic procedure displayed shorter hospitalization (MD = -3.40, 95%CI:-4.37-2.44, P
- Published
- 2014
- Full Text
- View/download PDF
12. Role of moesin in renal fibrosis.
- Author
-
Yong-Xi Chen, Wen Zhang, Wei-Ming Wang, Xia-Lian Yu, Yi-Mei Wang, Min-Jun Zhang, and Nan Chen
- Subjects
Medicine ,Science - Abstract
Renal fibrosis is the final common pathway of chronic kidney disease (CKD). Moesin is a member of Ezrin/Radixin/Moesin (ERM) protein family but its role in renal fibrosis is not clear.Human proximal tubular cells (HK-2) were stimulated with or without TGF-β1. Moesin and downstream target genes were examined by real-time PCR and western blot. Phosphorylation of moesin and related signaling pathway was investigated as well. Rat model of unilateral ureteral obstruction (UUO) was established and renal moesin was examined by immunohistochemistry. Moesin in HK-2 cells were knocked down by siRNA and change of downstream genes in transfected HK-2 cells was studied. All animal experiments were reviewed and approved by the Ethics Committee for animal care of Ruijin Hospital.HK-2 cells stimulated with TGF-β1 showed up-regulated level of α-SMA and down-regulated level of E-Cadherin as well as elevated mRNA and protein level of moesin. In rat model of UUO, renal moesin expression increased in accordance with severity of tubulointerestital fibrosis in the kidneys with ureteral ligation while the contralateral kidneys were normal. Further study showed that TGF-β1 could induce phosphorylation of moesin which depended on Erk signaling pathway and Erk inhibitor PD98059 could block moesin phosphorylation. Effects of TGF-β1 on moesin phosphorylation was prior to its activation to total moesin. RNA silencing studies showed that knocking down of moesin could attenuate decrease of E-Cadherin induced by TGF-β1.We find that moesin might be involved in renal fibrosis and its effects could be related to interacting with E-Cadherin.
- Published
- 2014
- Full Text
- View/download PDF
13. SUMOylation of PPARγ by rosiglitazone prevents LPS-induced NCoR degradation mediating down regulation of chemokines expression in renal proximal tubular cells.
- Author
-
Ying Lu, Qiao Zhou, Yongbing Shi, Jian Liu, Fang Zhong, Xu Hao, Cong Li, Nan Chen, and Weiming Wang
- Subjects
Medicine ,Science - Abstract
Rosiglitazone (RGL), a synthetic agonist for peroxisome proliferator activated receptor γ (PPARγ), exhibits a potent anti-inflammatory activity by attenuating local infiltration of neutrophils and monocytes in the renal interstitium. To evaluate the mechanisms that account for inhibiting inflammatory cells infiltration, we investigated the effect of RGL on chemokines secretion and nuclear factor-kappa B (NF-κB) activation in human renal proximal tubular cells (PTCs). We demonstrated that RGL significantly inhibited lipopolysaccharide (LPS)-induced interleukin-8 (IL-8) and monocyte chemoattractant protein-1 (MCP-1) production in a dose-dependent manner, without appreciable cytotoxicity. Chromatin immunoprecipitation (ChIP) assays clearly revealed that, RGL inhibited p65 binding to IL-8/MCP-1 gene promoters in LPS-stimulated PTCs. Interestingly, further experiments showed RGL reversed LPS-induced nuclear receptor corepressor (NCoR) degradation. In addition, knockdown of protein inhibitor of activated STAT1 (PIAS1), an indispensable small ubiquitin-like modifier (SUMO) ligase, abrogated the effects of RGL on antagonizing LPS-induced IL-8/MCP-1 overexpression and NCoR degradation. These findings suggest that, RGL activates PPARγ SUMOylation, inhibiting NCoR degradation and NF-κB activation in LPS-stimulated PTCs, which in turn decrease chemokines expression. The results unveil a new mechanism triggered by RGL for prevention of tubular inflammatory injury.
- Published
- 2013
- Full Text
- View/download PDF
14. Probabilistic MRI brain anatomical atlases based on 1,000 Chinese subjects.
- Author
-
Xing Wang, Nan Chen, ZhenTao Zuo, Rong Xue, Luo Jing, Zhuo Yan, DingGang Shen, and KunCheng Li
- Subjects
Medicine ,Science - Abstract
Brain atlases are designed to provide a standard reference coordinate system of the brain for neuroscience research. Existing human brain atlases are widely used to provide anatomical references and information regarding structural characteristics of the brain. The majority of them, however, are derived from one paticipant or small samples of the Western population. This poses a limitation for scientific studies on Eastern subjects. In this study, 10 new Chinese brain atlases for different ages and genders were constructed using MR anatomical images based on HAMMER (Hierarchical Attribute Matching Mechanism for Elastic Registration). A total of 1,000 Chinese volunteers ranging from 18 to 70 years old participated in this study. These population-specific brain atlases represent the basic structural characteristics of the Chinese population. They may be utilized for basic neuroscience studies and clinical diagnosis, including evaluation of neurological and neuropsychiatric disorders, in Chinese patients and those from other Eastern countries.
- Published
- 2013
- Full Text
- View/download PDF
15. Distinct metabolic profile of primary focal segmental glomerulosclerosis revealed by NMR-based metabolomics.
- Author
-
Xu Hao, Xia Liu, Weiming Wang, Hong Ren, Jingyuan Xie, Pingyan Shen, Donghai Lin, and Nan Chen
- Subjects
Medicine ,Science - Abstract
BACKGROUND: Primary focal segmental glomerulosclerosis (FSGS) is pathological entity which is characterized by idiopathic steroid-resistant nephrotic syndrome (SRNS) and progression to end-stage renal disease (ESRD) in the majority of affected individuals. Currently, there is no practical noninvasive technique to predict different pathological types of glomerulopathies. In this study, the role of urinary metabolomics in the diagnosis and pathogenesis of FSGS was investigated. METHODS: NMR-based metabolomics was applied for the urinary metabolic profile in the patients with FSGS (n = 25), membranous nephropathy (MN, n = 24), minimal change disease (MCD, n = 14) and IgA nephropathy (IgAN, n = 26), and healthy controls (CON, n = 35). The acquired data were analyzed using principal component analysis (PCA) followed by orthogonal projections to latent structure discriminant analysis (OPLS-DA). Model validity was verified using permutation tests. RESULTS: FSGS patients were clearly distinguished from healthy controls and other three types of glomerulopathies with good sensitivity and specificity based on their global urinary metabolic profiles. In FSGS patients, urinary levels of glucose, dimethylamine and trimethylamine increased compared with healthy controls, while pyruvate, valine, hippurate, isoleucine, phenylacetylglycine, citrate, tyrosine, 3-methylhistidine and β-hydroxyisovalerate decreased. Additionally, FSGS patients had lower urine N-methylnicotinamide levels compared with other glomerulopathies. CONCLUSIONS: NMR-based metabonomic approach is amenable for the noninvasive diagnosis and differential diagnosis of FSGS as well as other glomerulopathies, and it could indicate the possible mechanisms of primary FSGS.
- Published
- 2013
- Full Text
- View/download PDF
16. Predicting progression of IgA nephropathy: new clinical progression risk score.
- Author
-
Jingyuan Xie, Krzysztof Kiryluk, Weiming Wang, Zhaohui Wang, Shanmai Guo, Pingyan Shen, Hong Ren, Xiaoxia Pan, Xiaonong Chen, Wen Zhang, Xiao Li, Hao Shi, Yifu Li, Ali G Gharavi, and Nan Chen
- Subjects
Medicine ,Science - Abstract
IgA nephropathy (IgAN) is a common cause of end-stage renal disease (ESRD) in Asia. In this study, based on a large cohort of Chinese patients with IgAN, we aim to identify independent predictive factors associated with disease progression to ESRD. We collected retrospective clinical data and renal outcomes on 619 biopsy-diagnosed IgAN patients with a mean follow-up time of 41.3 months. In total, 67 individuals reached the study endpoint defined by occurrence of ESRD necessitating renal replacement therapy. In the fully adjusted Cox proportional hazards model, there were four baseline variables with a significant independent effect on the risk of ESRD. These included: eGFR [HR = 0.96(0.95-0.97)], serum albumin [HR = 0.47(0.32-0.68)], hemoglobin [HR = 0.79(0.72-0.88)], and SBP [HR = 1.02(1.00-1.03)]. Based on these observations, we developed a 4-variable equation of a clinical risk score for disease progression. Our risk score explained nearly 22% of the total variance in the primary outcome. Survival ROC curves revealed that the risk score provided improved prediction of ESRD at 24th, 60th and 120th month of follow-up compared to the three previously proposed risk scores. In summary, our data indicate that IgAN patients with higher systolic blood pressure, lower eGFR, hemoglobin, and albumin levels at baseline are at a greatest risk of progression to ESRD. The new progression risk score calculated based on these four baseline variables offers a simple clinical tool for risk stratification.
- Published
- 2012
- Full Text
- View/download PDF
17. Modified recombinant proteins can be exported via the Sec pathway in Escherichia coli.
- Author
-
Nan Chen, Fu-Lin Hong, Hai-Hong Wang, Qi-Hang Yuan, Wan-Yan Ma, Xu-Na Gao, Rui Shi, Rui-Juan Zhang, Chang-Sheng Sun, and Sheng-Bin Wang
- Subjects
Medicine ,Science - Abstract
The correct folding of a protein is a pre-requirement for its proper posttranslational modification. The Escherichia coli Sec pathway, in which preproteins, in an unfolded, translocation-competent state, are rapidly secreted across the cytoplasmic membrane, is commonly assumed to be unfavorable for their modification in the cytosol. Whether posttranslationally modified recombinant preproteins can be efficiently transported via the Sec pathway, however, remains unclear. ACP and BCCP domain (BCCP87) are carrier proteins that can be converted into active phosphopantetheinylated ACP (holo-ACP) and biotinylated-BCCP (holo-BCCP) by AcpS and BirA, respectively. In the present study, we show that, when ACP or BCCP87 is fused to the C-terminus of secretory protein YebF or MBP, the resulting fusion protein preYebF-ACP, preYebF-BCCP87, preMBP-ACP or preMBP-BCCP87 can be modified and then secreted. Our data demonstrate that posttranslational modification of preYebF-ACP, preYebF-BCCP87 preMBP-ACP and preMBP-BCCP87 can take place in the cytosol prior to translocation, and the Sec machinery accommodates these previously modified fusion proteins. High levels of active holo-ACP and holo-BCCP87 are achieved when AcpS or BirA is co-expressed, especially when sodium azide is used to retard their translocation across the inner membrane. Our results also provide an alternative to achieve a high level of modified recombinant proteins expressed extracellularly.
- Published
- 2012
- Full Text
- View/download PDF
18. Financial development, technological innovation and urban-rural income gap: Time series evidence from China
- Author
-
Wang, Li-Min, primary, Wu, Xiang-Li, additional, and Chu, Nan-Chen, additional
- Published
- 2023
- Full Text
- View/download PDF
19. Spatiotemporal evolution characteristics of coordinated development of urbanization and ecological environment in eastern Russia—Perspectives from the 3D global trend and 2D plane analysis
- Author
-
Chu, Nan-Chen, primary, Wu, Xiang-Li, additional, and Zhang, Ping-Yu, additional
- Published
- 2022
- Full Text
- View/download PDF
20. Evolution characteristics of temporal and spatial pattern of Russian economic differences since the 21st century
- Author
-
Chu, Nan-Chen, primary, Zhang, Ping-Yu, additional, and Wu, Xiang-Li, additional
- Published
- 2022
- Full Text
- View/download PDF
21. Spatiotemporal evolution characteristics of coordinated development of urbanization and ecological environment in eastern Russia-Perspectives from the 3D global trend and 2D plane analysis
- Author
-
Nan-Chen Chu, Xiang-Li Wu, and Ping-Yu Zhang
- Subjects
Multidisciplinary ,Spatio-Temporal Analysis ,Urbanization ,Humans ,Environment ,Russia - Abstract
Under the background of “the Belt and Road” and “the economic corridor of China, Mongolia and Russia” initiatives, it has great value to study the temporal and spatial evolution characteristics of the coordinated development between the urbanization and ecological environment in eastern Russia (the Siberian Federal District and the Far East Federal District). In this paper, we studied the urbanization development level, eco-environment development level, and their coupling coordinated development degree during 2005–2018 in the eastern Russia from the perspectives of the 3D global trend and 2D plane analysis. First, combining with the Population-Economic-Sociology and Pressure-State-Response models, the urbanization development level and eco-environment development level were calculated by the comprehensive weighting method of entropy weight and variation coefficient for eastern Russia. Second, the coupling coordinated development degree of the urbanization development level and eco-environment development level was measured by the coupling coordination model for eastern Russia. Finally, the spatial differentiation of the urbanization development level, the eco-environment development level and their coupling coordinated development degree was performed respectively by the 3D global trend and 2D plane analysis using ArcGIS. The results are as following. First, the comprehensive urbanization development level of eastern Russia has increased from 2005 to 2018, and the economic urbanization is the main factor that affects the urbanization development in eastern Russia. The comprehensive eco-environment development level of eastern Russia has decreased from 2005 to 2018, and the eco-environment pressure is the main factor that affects the eco-environment development in eastern Russia. The coupling coordination degree of the urbanization development and eco-environment development has increased from 2005 to 2018. However, it is still in the uncoordinated stage. Second, from 2005 to 2018, the urbanization development level of the Siberian Federal District is higher than that of the Far East Federal District. The eco-environment development level of the Siberian Federal District is balanced to that of the Far East Federal District. The coupling coordination degree of the Siberian Federal District is higher than that of the Far East Federal District. Among the Siberian and Far East Federal Districts, most of the federal subjects belong to the uncoordinated stage of the urbanization development and the eco-environment development. Third, the urbanization development level, the eco-environment development level, and their coupling coordinated development level are all spatially imbalanced in the eastern Russia, which show the “High West, Low East” and “High Center, Low North and Low South” spatial pattern from the perspectives of the 3D global trend and 2D plane analysis. The areas with high levels are concentrated in the Novosibirsk Region, Altay Territory, Kemerovo Region, Krasnoyarsk Territory, and Irkutsk Region. The areas with low ones are mostly in the Republic of Altay and Chukotka Autonomous Area. Finally, we suggest policies and strategies that can boost the growth and development of the urbanization and the eco-environment in the Sino-Russian border areas.
- Published
- 2022
22. Financial development, technological innovation and urban-rural income gap: Time series evidence from China
- Author
-
Li-Min Wang, Xiang-Li Wu, and Nan-Chen Chu
- Subjects
Multidisciplinary - Abstract
The main purpose of the paper is to investigate the relationship between technological innovation and income inequality for China based on the financial Kuznets curve (FKC) hypothesis. The study uses time-series data from 1985 to 2019. We employ the Johansen cointegration, ARDL model and VECM Granger causality techniques to analyze the links between the variables. We also use the DOLS, FMOLS and CCR mechanisms to estimate the long-run parameters. The paper finds that the FKC is valid for China’s economy in the long run. Technological innovation positively affects the urban-rural income gap, while there is an inverted-U shaped between financial development and the urban-rural income gap. The relationship between financial development and the urban-rural income gap is bi-directional causality. Technological innovation and the urban-rural income gap cause each other. Empirical results suggest a twofold policy meaning: i) to further the financial system and ii) to eliminate the adverse impacts of technological innovations on income distribution.
- Published
- 2023
- Full Text
- View/download PDF
23. Evolution characteristics of temporal and spatial pattern of Russian economic differences since the 21st century
- Author
-
Nan-Chen Chu, Ping-Yu Zhang, and Xiang-Li Wu
- Subjects
China ,Multidisciplinary ,Economics ,Asia, Eastern ,Humans ,Mongolia ,Moscow ,Russia - Abstract
Under the background of "the Belt and Road" and "the economic corridor of China, Mongolia and Russia" initiatives, it is of great significance to study the temporal and spatial economic pattern in the Russian Federation. Based on the economic development difference index, regional economic grade index, global trend analysis tool and spatial autocorrelation model, this paper analyzes the temporal and spatial pattern evolution characteristics of Russian economic differences from 2002 to 2020. The results are as following. First, although the economic imbalance among various federal subjects has been decreasing, the economic polarization has been still severe between the prosperous developed regions and the stagnant backward regions during 2002–2020. Russia’s economy shows a trend of changing from significant positive correlation in strong agglomeration space to positive correlation in weak agglomeration space, and then to random distribution. Second, there has been great differences of the economic development among various federal subjects. The economic grade of the Russian federal subjects presents a significant spatial differentiation pattern. The Russian Federation’s economic resources are concentrated in the first-class federal subject (Moscow City), second-class federal subjects (Tumen Region, Moscow Region and Saint-Petersburg city) and a few third-class federal subjects (Yamalo-Nenetsky Autonomous Area, Khanty-Mansiysky Autonomous Area, Republic of Tatarstan, Krasnodar Territory, Sverdlovsk Region, etc). Third, the Russian Federation’s economy presents "High Core, Low Periphery", "High West, Low East" and "High south, Low north" spatial differentiation pattern. The economic hot regions coincide with the high-class economic regions, which are mainly distributed in the contiguous areas of Ural Federal District and Volga Federal District, as well as the Moscow City, Moscow Region, Saint-Petersburg city, Krasnodar Territory and Rostov Region. The economic cold regions coincide with the low-class economic regions, which are mainly located in the Far East Federal District, the east of Siberian Federal District, the north of North West Federal District and the south of North-Caucasian Federal District. Finally, we suggest the recommendation for policy makers in Russia. And we propose the future research ideas.
- Published
- 2021
24. Genotype: A Crucial but Not Unique Factor Affecting the Clinical Phenotypes in Fabry Disease
- Author
-
Wen Zhang, Hong Ren, Yan Ouyang, Xiao Li, Pingyan Shen, Yaowen Xu, Zhaohui Wang, Weiming Wang, Liyan Ni, Li Yang, Xialian Yu, Jing Xu, Xiaoxia Pan, Nan Chen, and Xiaonong Chen
- Subjects
0301 basic medicine ,Male ,Gene Identification and Analysis ,lcsh:Medicine ,030105 genetics & heredity ,medicine.disease_cause ,Cornea ,Genotype ,Chronic Kidney Disease ,Medicine and Health Sciences ,Missense mutation ,lcsh:Science ,Frameshift Mutation ,Genetics ,Mutation ,Multidisciplinary ,Nonsense Mutation ,Phenotype ,Deletion Mutation ,Nephrology ,Codon, Nonsense ,Female ,Anatomy ,Research Article ,Adult ,China ,Substitution Mutation ,Missense Mutation ,Ocular Anatomy ,Nonsense mutation ,Mutation, Missense ,Biology ,Frameshift mutation ,03 medical and health sciences ,Young Adult ,Asian People ,Ocular System ,medicine ,Humans ,Mutation Detection ,Genetic Association Studies ,Point mutation ,lcsh:R ,Biology and Life Sciences ,Sequence Analysis, DNA ,medicine.disease ,Fabry disease ,030104 developmental biology ,alpha-Galactosidase ,Fabry Disease ,lcsh:Q - Abstract
Numerous α-galactosidase A (α-gal A) gene (GLA) mutations have been identified in Fabry disease (FD), but studies on genotype-phenotype correlation are limited. This study evaluated the features of GLA gene mutations and genotype-phenotype relationship in Chinese FD patients. Gene sequencing results, demographic information, clinical history, and laboratory findings were collected from 73 Chinese FD patients. Totally 47 mutations were identified, including 23 novel mutations which might be pathogenic. For male patients, those with frameshift and nonsense mutations presented the classical FD, whereas those with missense mutations presented both of classical and atypical phenotypes. Interestingly, two male patients with missense mutation p.R356G from two unrelated families, and two with p.R301Q from one family presented different phenotypes. A statistically significant association was found between the levels of α-gal A enzyme activity and ocular changes in males, though no significant association was found between residual enzyme activity level and genotype or clinical phenotypes. For female patients, six out of seven with frameshift mutations and one out of nine with missense mutation presented the classical FD, and α-gal A activity in those patients was found to be significantly lower than that of patients with atypical phenotypes (13.73 vs. 46.32 nmol/ml/h/mg). Our findings suggest that the α-gal A activity might be associated with the clinical severity in female patients with FD. But no obvious associations between activity level of α-gal A and genotype or clinical phenotypes were found for male patients.
- Published
- 2016
25. Robotic radical hysterectomy is superior to laparoscopic radical hysterectomy and open radical hysterectomy in the treatment of cervical cancer
- Author
-
Shanshan Liu, Jun Chen, Yue-Mei Jin, Chen-Chen Ren, and Yan-Nan Chen
- Subjects
medicine.medical_treatment ,Blood Loss, Surgical ,Cancer Treatment ,Uterine Cervical Neoplasms ,lcsh:Medicine ,Cochrane Library ,Postoperative Complications ,Mathematical and Statistical Techniques ,0302 clinical medicine ,Robotic Surgical Procedures ,Medicine and Health Sciences ,Reproductive System Procedures ,lcsh:Science ,Laparoscopy ,Cervical cancer ,Clinical Trials as Topic ,030219 obstetrics & reproductive medicine ,Multidisciplinary ,medicine.diagnostic_test ,Radical Hysterectomy ,Mortality rate ,Incidence (epidemiology) ,Robotics ,Hospitals ,Surgical Oncology ,Oncology ,030220 oncology & carcinogenesis ,Physical Sciences ,Engineering and Technology ,Female ,Anatomy ,Statistics (Mathematics) ,Research Article ,Clinical Oncology ,medicine.medical_specialty ,Surgical and Invasive Medical Procedures ,Hysterectomy ,Research and Analysis Methods ,Lymphatic System ,03 medical and health sciences ,medicine ,Humans ,Statistical Methods ,Neoplasm Staging ,Surgical Excision ,business.industry ,Mechanical Engineering ,lcsh:R ,Biology and Life Sciences ,Odds ratio ,Length of Stay ,medicine.disease ,Surgery ,Health Care ,Health Care Facilities ,lcsh:Q ,Lymph Nodes ,Clinical Medicine ,business ,Mathematics ,Meta-Analysis - Abstract
Objective Cervical cancer (CC) continues to be a global burden for women, with higher incidence and mortality rates reported annually. Many countries have witnessed a dramatic reduction in the prevalence of CC due to widely accessed robotic radical hysterectomy (RRH). This network meta-analysis aims to compare intraoperative and postoperative outcomes in way of RRH, laparoscopic radical hysterectomy (LTH) and open radical hysterectomy (ORH) in the treatment of early-stage CC. Methods A comprehensive search of PubMed, Cochrane Library and EMBASE databases was performed from inception to June 2016. Clinical controlled trials (CCTs) of above three hysterectomies in the treatment of early-stage CC were included in this study. Direct and indirect evidence were incorporated for calculating values of weighted mean difference (WMD) or odds ratio (OR), and drawing the surface under the cumulative ranking curve (SUCRA). Results Seventeen 17 CCTs were ultimately enrolled in this network meta-analysis. The network meta-analysis showed that patients treated by RRH and LRH had lower estimated blood loss compared to patients treated by ORH (WMD = -399.52, 95% CI = -600.64~-204.78; WMD = -277.86, 95%CI = -430.84 ~ -126.07, respectively). Patients treated by RRH and LRH had less hospital stay (days) than those by ORH (WMD = -3.49, 95% CI = -5.79~-1.24; WMD = -3.26, 95% CI = -5.04~-1.44, respectively). Compared with ORH, patients treated with RRH had lower postoperative complications (OR = 0.21, 95%CI = 0.08~0.65). Furthermore, the SUCRA value of three radical hysterectomies showed that patients receiving RRH illustrated better conditions on intraoperative blood loss, operation time, the number of resected lymph nodes, length of hospital stay and intraoperative and postoperative complications, while patients receiving ORH demonstrated relatively poorer conditions. Conclusion The results of this meta-analysis confirmed that early-stage CC patients treated by RRH were superior to patients treated by LRH and ORH in intraoperative blood loss, length of hospital stay and intraoperative and postoperative complications, and RRH might be regarded as a safe and effective therapeutic procedure for the management of CC.
- Published
- 2018
- Full Text
- View/download PDF
26. Underweight Is an Independent Risk Factor for Renal Function Deterioration in Patients with IgA Nephropathy
- Author
-
Hong Ren, Jingyuan Xie, Meng Yang, Nan Chen, Xiaoyan Zhang, Yan Ouyang, and Weiming Wang
- Subjects
Male ,Physiology ,Biopsy ,030232 urology & nephrology ,lcsh:Medicine ,Blood Pressure ,Kaplan-Meier Estimate ,030204 cardiovascular system & hematology ,Overweight ,urologic and male genital diseases ,Biochemistry ,Vascular Medicine ,Gastroenterology ,Body Mass Index ,0302 clinical medicine ,Risk Factors ,Chronic Kidney Disease ,Medicine and Health Sciences ,lcsh:Science ,Multidisciplinary ,medicine.diagnostic_test ,Middle Aged ,Lipids ,Cholesterol ,Physiological Parameters ,Nephrology ,Female ,Renal biopsy ,Underweight ,medicine.symptom ,Glomerular Filtration Rate ,Research Article ,Adult ,medicine.medical_specialty ,Renal function ,Surgical and Invasive Medical Procedures ,Nephropathy ,03 medical and health sciences ,Thinness ,Internal medicine ,medicine ,Humans ,Obesity ,Risk factor ,Retrospective Studies ,Nutrition ,business.industry ,Body Weight ,Malnutrition ,lcsh:R ,Biology and Life Sciences ,Glomerulonephritis, IGA ,medicine.disease ,Endocrinology ,Kidney Failure, Chronic ,lcsh:Q ,business ,Body mass index ,Kidney disease - Abstract
Studies on the relationship between body mass index (BMI) and renal progression in IgA Nephropathy (IgAN) were limited, especially for underweight patients with IgAN. To elucidate the clinical features and effect of underweight on renal function deterioration in this disease, we recruited IgAN patients with diagnostic age ≥18 years old and a baseline estimated glomerular filtration rate (eGFR) ≥15 ml/min/1.73m2 from our center between 1985 and 2014. Patients secondary to systemic diseases or follow-up less than 6 months were excluded. All patients’ clinical data at renal biopsy and during follow-up were recorded. Renal outcome was defined as end-stage kidney disease (ESRD). Baseline body mass index (BMI) was calculated by weight (kg) over squared height (m2). According to WHO Asian guideline, BMI was categorized as follows
- Published
- 2016
27. Comparison of Glomerular Transcriptome Profiles of Adult-Onset Steroid Sensitive Focal Segmental Glomerulosclerosis and Minimal Change Disease
- Author
-
Nan Chen, Chengguo Wei, Weiming Wang, Hong Ren, Jing Xu, Xiao Li, Danfeng Lv, Wen Zhang, Jingyuan Xie, John Cijiang He, Weijia Zhang, Jun Tong, and Jian Liu
- Subjects
Adult ,Male ,Pathology ,medicine.medical_specialty ,Kidney Glomerulus ,lcsh:Medicine ,Kidney development ,Biology ,Real-Time Polymerase Chain Reaction ,Podocyte ,Diagnosis, Differential ,Focal segmental glomerulosclerosis ,medicine ,Humans ,Minimal change disease ,lcsh:Science ,Kidney ,Multidisciplinary ,Primary Focal Segmental Glomerulosclerosis ,urogenital system ,Glomerulosclerosis, Focal Segmental ,Gene Expression Profiling ,Nephrosis, Lipoid ,lcsh:R ,Glomerulosclerosis ,medicine.disease ,medicine.anatomical_structure ,lcsh:Q ,Female ,Gamete generation ,Transcriptome ,Biomarkers ,Research Article - Abstract
Objective To search for biomarkers to differentiate primary focal segmental glomerulosclerosis (FSGS) and minimal change disease (MCD). Methods We isolated glomeruli from kidney biopsies of 6 patients with adult-onset steroid sensitiveFSGS and 5 patients with MCD, and compared the profiles of glomerular transcriptomes between the two groups of patients using microarray analysis. Results Analysis of differential expressed genes (DEGs) revealed that up-regulated DEGs in FSGS patients compared with MCD patients were primarily involved in spermatogenesis, gamete generation, regulation of muscle contraction, response to unfolded protein, cell proliferation and skeletal system development. The down-regulated DEGs were primarily related to metabolic process, intracellular transport, oxidation/reduction andestablishment of intracellular localization. We validated the expression of the top 6 up-regulated and top 6 down-regulated DEGs using real-time PCR. Membrane metallo-endopeptidase (MME) is a down-regulated gene that was previously identified as a key gene for kidney development. Immunostaining confirmed that the protein expression of MME decreased significantly in FSGS kidneys compared with MCD kidneys. Conclusions This report was the first study to examine transcriptomes in Chinese patients with various glomerular diseases. Expressions of MME both in RNA and protein level decreased significantly in glomeruli of FSGS kidneys compared with MCD kidneys. Our data suggested that MME might play a role in the normal physiological function of podocytes and a decrease in MME expression might be related to podocyte injury. We also identified genes and pathways specific for FSGS versus MCD, and our data could help identify potential new biomarkers for the differential diagnosis between these two diseases.
- Published
- 2015
28. Large-Scale Transcriptome Analysis of Cucumber and Botrytis cinerea during Infection
- Author
-
Yi Jin, Jing Zhu, Jingqi Wang, Xiaoqing He, Weiwen Kong, Nan Chen, and Tingting Liu
- Subjects
food.ingredient ,genetic structures ,lcsh:Medicine ,Genomics ,Computational biology ,Biology ,Real-Time Polymerase Chain Reaction ,Genome ,Transcriptome ,food ,Botany ,KEGG ,lcsh:Science ,Botrytis ,Botrytis cinerea ,Plant Diseases ,Multidisciplinary ,Gene Expression Profiling ,lcsh:R ,fungi ,food and beverages ,Computational Biology ,biology.organism_classification ,Gene expression profiling ,Host-Pathogen Interactions ,lcsh:Q ,Cucumis sativus ,Genome, Fungal ,Genome, Plant ,Reference genome ,Research Article - Abstract
Cucumber gray mold caused by Botrytis cinerea is considered one of the most serious cucumber diseases. With the advent of Hi-seq technology, it is possible to study the plant-pathogen interaction at the transcriptome level. To the best of our knowledge, this is the first application of RNA-seq to identify cucumber and B. cinerea differentially expressed genes (DEGs) before and after the plant-pathogen interaction. In total, 248,908,688 raw reads were generated; after removing low-quality reads and those containing adapter and poly-N, 238,341,648 clean reads remained to map the reference genome. There were 3,512 cucumber DEGs and 1,735 B. cinerea DEGs. GO enrichment and KEGG enrichment analysis were performed on these DEGs to study the interaction between cucumber and B. cinerea. To verify the reliability and accuracy of our transcriptome data, 5 cucumber DEGs and 5 B. cinerea DEGs were chosen for RT-PCR verification. This is the first systematic transcriptome analysis of components related to the B. cinerea-cucumber interaction. Functional genes and putative pathways identified herein will increase our understanding of the mechanism of the pathogen-host interaction.
- Published
- 2015
29. Upregulation of Bone Morphogenetic Protein-2 Synthesis and Consequent Collagen II Expression in Leptin-stimulated Human Chondrocytes
- Author
-
Kuo-Chin Huang, Shun-Fu Chang, Rong-Ze Hsieh, Fang-Yao Chiu, Yu-Ping Su, Cheng Allen Chang, Hsing-Chun Kuo, and Cheng-Nan Chen
- Subjects
Leptin ,Male ,STAT3 Transcription Factor ,animal structures ,MAP Kinase Signaling System ,Bone Morphogenetic Protein 2 ,lcsh:Medicine ,Bone morphogenetic protein ,Bone morphogenetic protein 2 ,Histone Deacetylases ,Chondrocytes ,Downregulation and upregulation ,Osteoarthritis ,medicine ,Humans ,RNA, Messenger ,STAT3 ,lcsh:Science ,Collagen Type II ,Cells, Cultured ,Aged ,Regulation of gene expression ,Aged, 80 and over ,Mitogen-Activated Protein Kinase 1 ,Multidisciplinary ,Mitogen-Activated Protein Kinase 3 ,biology ,Cartilage ,lcsh:R ,Janus Kinase 2 ,Middle Aged ,HDAC4 ,Molecular biology ,Cell biology ,Repressor Proteins ,medicine.anatomical_structure ,Gene Expression Regulation ,embryonic structures ,biology.protein ,Female ,lcsh:Q ,Research Article - Abstract
Bone morphogenetic proteins (BMPs) play positive roles in cartilage development, but they can barely be detected in healthy articular cartilage. However, recent evidence has indicated that BMPs could be detected in osteoarthritic and damaged cartilage and their precise roles have not been well defined. Extremely high amounts of leptin have been reported in obese individuals, which can be associated with osteoarthritis (OA) development. The aim of this study was to investigate whether BMPs could be induced in human primary chondrocytes during leptin-stimulated OA development and the underlying mechanism. We found that expression of BMP-2 mRNA, but not BMP-4, BMP-6, or BMP-7 mRNA, could be increased in human primary chondrocytes under leptin stimulation. Moreover, this BMP-2 induction was mediated through transcription factor-signal transducer and activator of transcription (STAT) 3 activation via JAK2-ERK1/2-induced Ser727-phosphorylation. Of note, histone deacetylases (HDACs) 3 and 4 were both involved in modulating leptin-induced BMP-2 mRNA expression through different pathways: HDAC3, but not HDAC4, associated with STAT3 to form a complex. Our results further demonstrated that the role of BMP-2 induction under leptin stimulation is to increase collagen II expression. The findings in this study provide new insights into the regulatory mechanism of BMP-2 induction in leptin-stimulated chondrocytes and suggest that BMP-2 may play a reparative role in regulating leptin-induced OA development.
- Published
- 2015
30. Significant reduction of antibiotic consumption and patients' costs after an action plan in China, 2010-2014
- Author
-
Yang Wang, Jun Cao, Qian Ding, Yuan Bian, Haijun Lyu, Binbin Chen, Ruilian Ma, Wenfei Pan, Xuelian Huang, Zhaoxin Lu, Shucheng Yang, Ping Chen, Fusheng Sun, Nan Chen, Rui Peng, Shaoshan Kong, Meijun Zhu, Junxia Fang, Xinchao Li, Qiuhong Chen, Xiujuan Yue, Jian Jin, Jinhui Guo, Xiaomei Mo, Enjing Zhang, Yingying Wang, Xianhua Ren, Agula B, Lidao Bao, Jian Cai, Yi Wang, Yuerong Zhang, Rupin Liu, and Wenbin Meng
- Subjects
Drug Utilization ,medicine.medical_specialty ,China ,medicine.drug_class ,Antibiotics ,lcsh:Medicine ,Pharmacy ,Drug Prescriptions ,Antibiotic resistance ,Health care ,Outcome Assessment, Health Care ,medicine ,Economics, Pharmaceutical ,Intensive care medicine ,Perioperative Period ,lcsh:Science ,Prescription Drug Misuse ,Multidisciplinary ,business.industry ,lcsh:R ,Perioperative ,Length of Stay ,Antibiotic misuse ,Hospitals ,Anti-Bacterial Agents ,Action plan ,Emergency medicine ,Regression Analysis ,lcsh:Q ,business ,Research Article - Abstract
Introduction On July 1, 2011, the Chinese government launched a national Action Plan for antibiotic stewardship targeting antibiotic misuse in public hospitals. The aim of this study was to evaluate the impacts of the Action Plan in terms of frequency and intensity of antibiotic utilization and patients costs in public general hospitals. Methods Administrative pharmacy data from July 2010 to June 2014 were sampled from 65 public general hospitals and divided into three segments: (1) July 2010 to June 2011 as the preparation period; (2) July 2011 to June 2012 as the intervention period; and (3) July 2012 to June 2014 as the assessment period. The outcome measures included (1) antibiotic prescribing rates; (2) intensity of antibiotic consumption; (3) patients costs; and (4) duration of peri-operative antibiotic treatment in clean surgeries of thyroidectomy, breast, hernia, and orthopedic procedures. Longitudinal and cross-sectional analyses were conducted. Results Longitudinal analyses showed significant trend changes in the frequency and intensity of antibiotic consumption, the patients’ costs on antibiotics, and the duration of antibiotic treatment received by surgical patients undergoing the 4 clean procedures during the intervention period. Cross-sectional analyses showed that the antibiotic prescribing rates were reduced to 35.3% and 12.9% in inpatient and outpatient settings, that the intensity of antibiotic consumption was reduced to 35.9 DDD/100 bed-days, that patients’ costs on antibiotics were reduced significantly, and that the duration of peri-operative antibiotic treatment received by surgical patients undergoing the 4 types of clean procedures decreased to less than 24 hour during the assessment period. Conclusion The Action Plan, as a combination of managerial and professional strategies, was effective in reducing the frequency and intensity of antibiotic consumption, patients’ costs on antibiotics, and the duration of peri-operative antibiotic treatment in the 4 clean surgeries.
- Published
- 2015
31. Hepatic Lesions Detected after Mastectomy, in Breast Cancer Patients with Hepatitis Background May Need to Undergo Liver Biopsy to Rule Out Second Primary Hepatocellular Carcinoma
- Author
-
Song Gao, Zhiqiang Meng, Hao Chen, Bi Yun Wang, Zhou Yu Ning, Sonya Vargulick, Ya Nan Chen, Qi Wen Chen, Hai Jin Li, and Yehua Shen
- Subjects
Oncology ,Male ,medicine.medical_treatment ,Biopsy ,Cancer Treatment ,lcsh:Medicine ,medicine.disease_cause ,Pathology and Laboratory Medicine ,Metastasis ,0302 clinical medicine ,Breast Tumors ,Basic Cancer Research ,Medicine and Health Sciences ,Neoplasm Metastasis ,lcsh:Science ,Mastectomy ,Multidisciplinary ,medicine.diagnostic_test ,Liver Diseases ,Liver Neoplasms ,Neoplasms, Second Primary ,Middle Aged ,Medical microbiology ,Combined Modality Therapy ,Magnetic Resonance Imaging ,030220 oncology & carcinogenesis ,Liver biopsy ,Hepatocellular carcinoma ,Viruses ,030211 gastroenterology & hepatology ,Female ,Pathogens ,Research Article ,medicine.medical_specialty ,Hepatitis B virus ,Carcinoma, Hepatocellular ,Hepatitis, Viral, Human ,Breast Neoplasms ,Surgical and Invasive Medical Procedures ,Gastroenterology and Hepatology ,Carcinomas ,Microbiology ,03 medical and health sciences ,Breast cancer ,Signs and Symptoms ,Internal medicine ,Breast Cancer ,Gastrointestinal Tumors ,medicine ,Cancer Detection and Diagnosis ,Humans ,Neoplasm Staging ,Retrospective Studies ,Hepatitis ,Biology and life sciences ,business.industry ,lcsh:R ,Viral pathogens ,Organisms ,Cancer ,Cancers and Neoplasms ,Hepatocellular Carcinoma ,medicine.disease ,digestive system diseases ,Hepatitis viruses ,Microbial pathogens ,Lesions ,lcsh:Q ,Neoplasm Grading ,business - Abstract
Purpose Liver metastasis is a common phenomenon in breast cancer patients. Hepatic lesions detected in breast cancer patients may be easily misdiagnosed as metastatic sites, rather than being treated as primary foci. This descriptive study aims to investigate the clinicopathological characteristics of second primary hepatocellular carcinoma in breast cancer patients and to infer in which circumstances liver biopsy is needed. Methods Eighty-one consecutive breast cancer patients with hepatic lesions admitted to our department were retrospectively studied and analyzed from January 2009 to March 2014 according to Warren and Gates’ criteria for second primary cancers. Results Second primary hepatocellular carcinoma was observed in sixteen of seventy eight patients with breast cancer. There was a significant difference in HBV status between the second HCC group and liver metastases group (P
- Published
- 2014
32. Diagnosis of Kikuchi-Fujimoto Disease: A Comparison between Open Biopsy and Minimally Invasive Ultrasound-Guided Core Biopsy
- Author
-
Pei-Jen Lou, Tseng-Cheng Chen, Chun-Nan Chen, Shan-Chi Yu, Tsung-Lin Yang, Hsin-I Huang, Tzu-Yu Hsiao, Jenq-Yuh Ko, and Cheng-Ping Wang
- Subjects
Adult ,Image-Guided Biopsy ,Male ,medicine.medical_specialty ,Open biopsy ,Clinical Pathology ,Adolescent ,lcsh:Medicine ,Pathology and Laboratory Medicine ,Diagnostic Radiology ,Young Adult ,Diagnostic Medicine ,Biopsy ,medicine ,Medicine and Health Sciences ,Humans ,Sampling (medicine) ,lcsh:Science ,Child ,Pathological ,Histiocytic Necrotizing Lymphadenitis ,Retrospective Studies ,Ultrasonography ,Kikuchi-Fujimoto Disease ,Multidisciplinary ,medicine.diagnostic_test ,business.industry ,Radiology and Imaging ,lcsh:R ,Retrospective cohort study ,Middle Aged ,Surgery ,Otorhinolaryngology ,lcsh:Q ,Female ,Radiology ,business ,Core biopsy ,Research Article - Abstract
Kikuchi-Fujimoto disease (KFD) is a self-limited disease without any need of surgical treatments. Sampling of tissue is the only invasive procedure during the clinical course. However, the standard sampling procedure with accuracy, minimal invasiveness, and esthetic maintenance has not been established yet. In this study, a retrospective review of clinical utility and pathological presentations of the ultrasound-guided core biopsy (USCB) and the open biopsy (OB) in consecutive KFD patients. From 2010 to 2012, 34 consecutive patients were enrolled. USCB was performed in 11 patients, and OB was done in 26 patients. KFD was confirmed in 82% cases by USCB. Similar pathological presentations were found both in the specimens of USCB and OB. In the three patients who had received both USCB and OB, KFD was confirmed by USCB in one case, while two by OB. Sampling errors were found both in USCB and OB. For diagnosing KFD, USCB can serve as the first-line diagnostic tool. OB can be applied only in the failed cases of USCB.
- Published
- 2014
33. Role of moesin in renal fibrosis
- Author
-
Yi-Mei Wang, Yong-Xi Chen, Wen Zhang, Xia-Lian Yu, Min-Jun Zhang, Weiming Wang, and Nan Chen
- Subjects
MAPK/ERK pathway ,Pathology ,medicine.medical_specialty ,Moesin ,Blotting, Western ,lcsh:Medicine ,macromolecular substances ,Real-Time Polymerase Chain Reaction ,urologic and male genital diseases ,Cell Line ,Transforming Growth Factor beta1 ,Ezrin ,Fibrosis ,Radixin ,Chronic Kidney Disease ,Renal fibrosis ,Medicine and Health Sciences ,Renal Diseases ,Medicine ,Animals ,Humans ,Renal Failure ,Phosphorylation ,RNA, Small Interfering ,Renal Insufficiency, Chronic ,lcsh:Science ,Analysis of Variance ,Multidisciplinary ,business.industry ,Reverse Transcriptase Polymerase Chain Reaction ,Microfilament Proteins ,lcsh:R ,medicine.disease ,Cadherins ,Immunohistochemistry ,Actins ,Rats ,Blot ,Nephrology ,Tubulointerstitial Disease ,Cancer research ,lcsh:Q ,business ,Signal Transduction ,Research Article - Abstract
Background Renal fibrosis is the final common pathway of chronic kidney disease (CKD). Moesin is a member of Ezrin/Radixin/Moesin (ERM) protein family but its role in renal fibrosis is not clear. Method Human proximal tubular cells (HK-2) were stimulated with or without TGF-β1. Moesin and downstream target genes were examined by real-time PCR and western blot. Phosphorylation of moesin and related signaling pathway was investigated as well. Rat model of unilateral ureteral obstruction (UUO) was established and renal moesin was examined by immunohistochemistry. Moesin in HK-2 cells were knocked down by siRNA and change of downstream genes in transfected HK-2 cells was studied. All animal experiments were reviewed and approved by the Ethics Committee for animal care of Ruijin Hospital. Result HK-2 cells stimulated with TGF-β1 showed up-regulated level of α-SMA and down-regulated level of E-Cadherin as well as elevated mRNA and protein level of moesin. In rat model of UUO, renal moesin expression increased in accordance with severity of tubulointerestital fibrosis in the kidneys with ureteral ligation while the contralateral kidneys were normal. Further study showed that TGF-β1 could induce phosphorylation of moesin which depended on Erk signaling pathway and Erk inhibitor PD98059 could block moesin phosphorylation. Effects of TGF-β1 on moesin phosphorylation was prior to its activation to total moesin. RNA silencing studies showed that knocking down of moesin could attenuate decrease of E-Cadherin induced by TGF-β1. Conclusion We find that moesin might be involved in renal fibrosis and its effects could be related to interacting with E-Cadherin.
- Published
- 2014
34. SUMOylation of PPARγ by rosiglitazone prevents LPS-induced NCoR degradation mediating down regulation of chemokines expression in renal proximal tubular cells
- Author
-
Nan Chen, Xu Hao, Weiming Wang, Qiao Zhou, Fang Zhong, Ying Lu, Jian Liu, Yongbing Shi, and Cong Li
- Subjects
Lipopolysaccharides ,Chemokine ,SUMO protein ,Anti-Inflammatory Agents ,Peroxisome proliferator-activated receptor ,Down-Regulation ,lcsh:Medicine ,Cell Line ,Kidney Tubules, Proximal ,Ligases ,Rosiglitazone ,Downregulation and upregulation ,medicine ,Humans ,Promoter Regions, Genetic ,lcsh:Science ,Chemokine CCL2 ,chemistry.chemical_classification ,Multidisciplinary ,biology ,Monocyte ,lcsh:R ,Sumoylation ,Chemotaxis ,Cell biology ,PPAR gamma ,medicine.anatomical_structure ,STAT1 Transcription Factor ,Biochemistry ,Nuclear receptor ,chemistry ,Proteolysis ,biology.protein ,Thiazolidinediones ,lcsh:Q ,Chemokines ,Chromatin immunoprecipitation ,Co-Repressor Proteins ,Research Article - Abstract
Rosiglitazone (RGL), a synthetic agonist for peroxisome proliferator activated receptor γ (PPARγ), exhibits a potent anti-inflammatory activity by attenuating local infiltration of neutrophils and monocytes in the renal interstitium. To evaluate the mechanisms that account for inhibiting inflammatory cells infiltration, we investigated the effect of RGL on chemokines secretion and nuclear factor-kappa B (NF-κB) activation in human renal proximal tubular cells (PTCs). We demonstrated that RGL significantly inhibited lipopolysaccharide (LPS)-induced interleukin-8 (IL-8) and monocyte chemoattractant protein-1 (MCP-1) production in a dose-dependent manner, without appreciable cytotoxicity. Chromatin immunoprecipitation (ChIP) assays clearly revealed that, RGL inhibited p65 binding to IL-8/MCP-1 gene promoters in LPS-stimulated PTCs. Interestingly, further experiments showed RGL reversed LPS-induced nuclear receptor corepressor (NCoR) degradation. In addition, knockdown of protein inhibitor of activated STAT1 (PIAS1), an indispensable small ubiquitin-like modifier (SUMO) ligase, abrogated the effects of RGL on antagonizing LPS-induced IL-8/MCP-1 overexpression and NCoR degradation. These findings suggest that, RGL activates PPARγ SUMOylation, inhibiting NCoR degradation and NF-κB activation in LPS-stimulated PTCs, which in turn decrease chemokines expression. The results unveil a new mechanism triggered by RGL for prevention of tubular inflammatory injury.
- Published
- 2013
35. Distinct metabolic profile of primary focal segmental glomerulosclerosis revealed by NMR-based metabolomics
- Author
-
Hong Ren, Pingyan Shen, Xia Liu, Donghai Lin, Weiming Wang, Xu Hao, Jingyuan Xie, and Nan Chen
- Subjects
Adult ,Male ,medicine.medical_specialty ,Magnetic Resonance Spectroscopy ,Rat kidney ,lcsh:Medicine ,Computational biology ,Biology ,urologic and male genital diseases ,Models, Biological ,Basic research ,Internal medicine ,medicine ,Humans ,Diabetic Nephropathies ,lcsh:Science ,Nmr based metabolomics ,Aged ,Aged, 80 and over ,Multidisciplinary ,Primary Focal Segmental Glomerulosclerosis ,lcsh:R ,Middle Aged ,female genital diseases and pregnancy complications ,Endocrinology ,Multicenter study ,Uremic toxins ,Metabolome ,Kidney Failure, Chronic ,Female ,lcsh:Q ,Metabolic profile ,Research Article - Abstract
BACKGROUND: Primary focal segmental glomerulosclerosis (FSGS) is pathological entity which is characterized by idiopathic steroid-resistant nephrotic syndrome (SRNS) and progression to end-stage renal disease (ESRD) in the majority of affected individuals. Currently, there is no practical noninvasive technique to predict different pathological types of glomerulopathies. In this study, the role of urinary metabolomics in the diagnosis and pathogenesis of FSGS was investigated. METHODS: NMR-based metabolomics was applied for the urinary metabolic profile in the patients with FSGS (n = 25), membranous nephropathy (MN, n = 24), minimal change disease (MCD, n = 14) and IgA nephropathy (IgAN, n = 26), and healthy controls (CON, n = 35). The acquired data were analyzed using principal component analysis (PCA) followed by orthogonal projections to latent structure discriminant analysis (OPLS-DA). Model validity was verified using permutation tests. RESULTS: FSGS patients were clearly distinguished from healthy controls and other three types of glomerulopathies with good sensitivity and specificity based on their global urinary metabolic profiles. In FSGS patients, urinary levels of glucose, dimethylamine and trimethylamine increased compared with healthy controls, while pyruvate, valine, hippurate, isoleucine, phenylacetylglycine, citrate, tyrosine, 3-methylhistidine and β-hydroxyisovalerate decreased. Additionally, FSGS patients had lower urine N-methylnicotinamide levels compared with other glomerulopathies. CONCLUSIONS: NMR-based metabonomic approach is amenable for the noninvasive diagnosis and differential diagnosis of FSGS as well as other glomerulopathies, and it could indicate the possible mechanisms of primary FSGS.
- Published
- 2013
36. Modified recombinant proteins can be exported via the Sec pathway in Escherichia coli
- Author
-
Chang-Sheng Sun, Rui Shi, Hai-Hong Wang, Qi-Hang Yuan, Rui-Juan Zhang, Xu-Na Gao, Sheng-Bin Wang, Nan Chen, Wan-Yan Ma, and Fu-Lin Hong
- Subjects
Protein Folding ,animal structures ,Applied Microbiology ,Recombinant Fusion Proteins ,Biophysics ,lcsh:Medicine ,medicine.disease_cause ,Biochemistry ,Microbiology ,law.invention ,Cytosol ,stomatognathic system ,law ,Acyl Carrier Protein ,Fatty Acid Synthase, Type II ,medicine ,Inner membrane ,Protein Interactions ,lcsh:Science ,Biology ,Escherichia coli ,Extracellular Matrix Proteins ,Escherichia Coli ,Multidisciplinary ,biology ,Escherichia coli Proteins ,lcsh:R ,Proteins ,Fusion protein ,Recombinant Proteins ,humanities ,Chaperone Proteins ,Bacterial Pathogens ,Transport protein ,Protein Transport ,Acyl carrier protein ,Secretory protein ,biology.protein ,Recombinant DNA ,bacteria ,lipids (amino acids, peptides, and proteins) ,lcsh:Q ,Extracellular Space ,Protein Processing, Post-Translational ,Research Article ,Biotechnology ,Acetyl-CoA Carboxylase - Abstract
The correct folding of a protein is a pre-requirement for its proper posttranslational modification. The Escherichia coli Sec pathway, in which preproteins, in an unfolded, translocation-competent state, are rapidly secreted across the cytoplasmic membrane, is commonly assumed to be unfavorable for their modification in the cytosol. Whether posttranslationally modified recombinant preproteins can be efficiently transported via the Sec pathway, however, remains unclear. ACP and BCCP domain (BCCP87) are carrier proteins that can be converted into active phosphopantetheinylated ACP (holo-ACP) and biotinylated-BCCP (holo-BCCP) by AcpS and BirA, respectively. In the present study, we show that, when ACP or BCCP87 is fused to the C-terminus of secretory protein YebF or MBP, the resulting fusion protein preYebF-ACP, preYebF-BCCP87, preMBP-ACP or preMBP-BCCP87 can be modified and then secreted. Our data demonstrate that posttranslational modification of preYebF-ACP, preYebF-BCCP87 preMBP-ACP and preMBP-BCCP87 can take place in the cytosol prior to translocation, and the Sec machinery accommodates these previously modified fusion proteins. High levels of active holo-ACP and holo-BCCP87 are achieved when AcpS or BirA is co-expressed, especially when sodium azide is used to retard their translocation across the inner membrane. Our results also provide an alternative to achieve a high level of modified recombinant proteins expressed extracellularly.
- Published
- 2012
37. RNA-Seq Analyses Generate Comprehensive Transcriptomic Landscape and Reveal Complex Transcript Patterns in Hepatocellular Carcinoma
- Author
-
Dong Wu, Lisha Li, Hongwei Li, Biaoyang Lin, Jinliang Xing, Tian Tian, Feng Shen, Xi Ma, Qichao Huang, Hanqiang Liu, Zhi-Nan Chen, Fan Mo, and Wei Yu
- Subjects
Genetic Screens ,Heredity ,Carcinoma, Hepatocellular ,Genetic Causes of Cancer ,lcsh:Medicine ,Gene Expression ,RNA-Seq ,Sequence alignment ,Gastroenterology and Hepatology ,Biology ,DNA sequencing ,Gene Splicing ,Transcriptome ,Exon ,Genome Analysis Tools ,Gene expression ,Molecular Cell Biology ,Genetics ,Cancer Genetics ,Humans ,Protein Isoforms ,RNA, Messenger ,lcsh:Science ,Gene ,Genetic Association Studies ,Clinical Genetics ,Multidisciplinary ,Sequence Analysis, RNA ,Liver Diseases ,Cancer Risk Factors ,lcsh:R ,Liver Neoplasms ,Linkage (Genetics) ,Computational Biology ,Genetic Maps ,Human Genetics ,Genomics ,Gene Therapy ,Exons ,Gene Expression Regulation, Neoplastic ,Oncology ,RNA splicing ,Medicine ,lcsh:Q ,Research Article - Abstract
RNA-seq is a powerful tool for comprehensive characterization of whole transcriptome at both gene and exon levels and with a unique ability of identifying novel splicing variants. To date, RNA-seq analysis of HBV-related hepatocellular carcinoma (HCC) has not been reported. In this study, we performed transcriptome analyses for 10 matched pairs of cancer and non-cancerous tissues from HCC patients on Solexa/Illumina GAII platform. On average, about 21.6 million sequencing reads and 10.6 million aligned reads were obtained for samples sequenced on each lane, which was able to identify >50% of all the annotated genes for each sample. Furthermore, we identified 1,378 significantly differently expressed genes (DEGs) and 24, 338 differentially expressed exons (DEEs). Comprehensive function analyses indicated that cell growth-related, metabolism-related and immune-related pathways were most significantly enriched by DEGs, pointing to a complex mechanism for HCC carcinogenesis. Positional gene enrichment analysis showed that DEGs were most significantly enriched at chromosome 8q21.3-24.3. The most interesting findings were from the analysis at exon levels where we characterized three major patterns of expression changes between gene and exon levels, implying a much complex landscape of transcript-specific differential expressions in HCC. Finally, we identified a novel highly up-regulated exon-exon junction in ATAD2 gene in HCC tissues. Overall, to our best knowledge, our study represents the most comprehensive characterization of HBV-related HCC transcriptome including exon level expression changes and novel splicing variants, which illustrated the power of RNA-seq and provided important clues for understanding the molecular mechanisms of HCC pathogenesis at system-wide levels.
- Published
- 2011
38. MicroRNA let-7a inhibits proliferation of human prostate cancer cells in vitro and in vivo by targeting E2F2 and CCND2
- Author
-
Qingchuan Dong, Angang Yang, He-Yao Wang, Wei-Wei Qin, Zhi-Nan Chen, Jianlin Yuan, Weijun Qin, Ping Meng, Fuli Wang, and Tao Wang
- Subjects
Male ,endocrine system ,Science ,Cell Biology/Cell Growth and Division ,Down-Regulation ,Biology ,Transfection ,Prostate cancer ,Cyclin D2 ,E2F2 Transcription Factor ,In vivo ,Cell Line, Tumor ,microRNA ,medicine ,Humans ,Cell Biology/Chemical Biology of the Cell ,E2F2 ,Cell Proliferation ,Multidisciplinary ,Cell Cycle ,Urology/Prostate Cancer ,Prostatic Neoplasms ,Cell cycle ,medicine.disease ,Molecular biology ,In vitro ,MicroRNAs ,Cancer cell ,Cancer research ,Medicine ,Research Article - Abstract
BackgroundPrevious work has shown reduced expression levels of let-7 in lung tumors. But little is known about the expression or mechanisms of let-7a in prostate cancer. In this study, we used in vitro and in vivo approaches to investigate whether E2F2 and CCND2 are direct targets of let-7a, and if let-7a acts as a tumor suppressor in prostate cancer by down-regulating E2F2 and CCND2.Methodology/principalFindings Real-time RT-PCR demonstrated that decreased levels of let-7a are present in resected prostate cancer samples and prostate cancer cell lines. Cellular proliferation was inhibited in PC3 cells and LNCaP cells after transfection with let-7a. Cell cycle analysis showed that let-7a induced cell cycle arrest at the G1/S phase. A dual-luciferase reporter assay demonstrated that the 3'UTR of E2F2 and CCND2 were directly bound to let-7a and western blotting analysis further indicated that let-7a down-regulated the expression of E2F2 and CCND2. Our xenograft models of prostate cancer confirmed the capability of let-7a to inhibit prostate tumor development in vivo.Conclusions/significanceThese findings help to unravel the anti-proliferative mechanisms of let-7a in prostate cancer. Let-7a may also be novel therapeutic candidate for prostate cancer given its ability to induce cell-cycle arrest and inhibit cell growth, especially in hormone-refractory prostate cancer.
- Published
- 2010
39. Porphyrin Homeostasis Maintained by ABCG2 Regulates Self-Renewal of Embryonic Stem Cells
- Author
-
Yun-Nan Chen, Chia-Rui Shen, Chia-Ning Shen, Yu-Hsing Lin, Jimmy Susanto, Yu-Ting Yan, Chung-Hsuan Chen, and Sheng-Ta Tsai
- Subjects
Homeobox protein NANOG ,Indoles ,Porphyrins ,Somatic cell ,Cell Biology/Developmental Molecular Mechanisms ,lcsh:Medicine ,Down-Regulation ,Protoporphyrins ,Biology ,Models, Biological ,Histones ,Mice ,ATP Binding Cassette Transporter, Subfamily G, Member 2 ,Animals ,Homeostasis ,lcsh:Science ,Cells, Cultured ,Embryonic Stem Cells ,Cell Proliferation ,Homeodomain Proteins ,Multidisciplinary ,Cell growth ,lcsh:R ,Nanog Homeobox Protein ,Transfection ,Cell cycle ,Embryonic stem cell ,Molecular biology ,Cell biology ,Developmental Biology/Stem Cells ,Gene Knockdown Techniques ,embryonic structures ,Developmental Biology/Cell Differentiation ,lcsh:Q ,ATP-Binding Cassette Transporters ,sense organs ,Stem cell ,Tumor Suppressor Protein p53 ,Reactive Oxygen Species ,Octamer Transcription Factor-3 ,Research Article ,DNA Damage ,Signal Transduction - Abstract
Background Under appropriate culture conditions, undifferentiated embryonic stem (ES) cells can undergo multiple self-renewal cycles without loss of pluripotency suggesting they must be equipped with specific defense mechanisms to ensure sufficient genetic stability during self-renewal expansion. The ATP binding cassette transporter ABCG2 is expressed in a wide variety of somatic and embryonic stem cells. However, whether it plays an important role in stem cell maintenance remains to be defined. Methodology/principal findings Here we provide evidence to show that an increase in the level of ABCG2 was observed accompanied by ES colony expansion and then were followed by decreases in the level of protoporphyrin IX (PPIX) indicating that ABCG2 plays a role in maintaining porphyrin homoeostasis. RNA-interference mediated inhibition of ABCG2 as well as functional blockage of ABCG2 transporter with fumitremorgin C (FTC), a specific and potent inhibitor of ABCG2, not only elevated the cellular level of PPIX, but also arrest the cell cycle and reduced expression of the pluripotent gene Nanog. Overexpression of ABCG2 in ES cells was able to counteract the increase of endogenous PPIX induced by treatment with 5-Aminolevulinic acid suggesting ABCG2 played a direct role in removal of PPIX from ES cells. We also found that excess PPIX in ES cells led to elevated levels of reactive oxygen species which in turn triggered DNA damage signals as indicated by increased levels of gammaH2AX and phosphorylated p53. The increased level of p53 reduced Nanog expression because RNA- interference mediated inhibition of p53 was able to prevent the downregulation of Nanog induced by FTC treatment. Conclusions/significance The present work demonstrated that ABCG2 protects ES cells from PPIX accumulation during colony expansion, and that p53 and gammaH2AX acts as a downstream checkpoint of ABCG2-dependent defense machinery in order to maintain the self-renewal of ES cells.
- Published
- 2008
40. Expression of Beclin Family Proteins Is Associated with Tumor Progression in Oral Cancer
- Author
-
Jing-Lan Liu, Cheng-Hsing Lo, Cheng-Nan Chen, Ying-Chou Lu, Jrhau Lung, Shun-Fu Chang, Chien-Hui Hung, Fang-Hui Lee, and Fen-Fen Chen
- Subjects
Male ,lcsh:Medicine ,Kaplan-Meier Estimate ,Biology ,Apoptosis Regulatory Proteins ,medicine.disease_cause ,Cell Line, Tumor ,Autophagy ,medicine ,Humans ,lcsh:Science ,Aged ,Aged, 80 and over ,Mouth neoplasm ,Multidisciplinary ,lcsh:R ,Disease progression ,Intracellular Signaling Peptides and Proteins ,Membrane Proteins ,Cancer ,Middle Aged ,Prognosis ,medicine.disease ,Cell biology ,Gene Expression Regulation, Neoplastic ,Membrane protein ,Tumor progression ,Disease Progression ,Cancer research ,lcsh:Q ,Beclin-1 ,Female ,Mouth Neoplasms ,Carcinogenesis ,Research Article - Abstract
Background Beclin 1 and Beclin 2 are autophagy-related proteins that show similar amino acid sequences and domain structures. Beclin 1 established the first connection between autophagy and cancer. However, the role of Beclin 2 in cancer is unclear. The aims of this study were to analyze Beclin 1 and Beclin 2 expressions in oral cancer tissues and in cell lines, and to evaluate their possible roles in cancer progression. Methods We investigated Beclin 1 and Beclin 2 expressions by immunohistochemistry in 195 cases of oral cancer. The prognostic roles of Beclin 1 and Beclin 2 were analyzed statistically. In vitro, overexpression and knockdown of Beclin proteins were performed on an oral cancer cell line, SAS. The immunofluorescence and autophagy flux assays confirmed that Beclin proteins were involved in autophagy. The impacts of Beclin 1 and Beclin 2 on autophagy and tumor growth were evaluated by conversion of LC3-I to LC3-II and by clonogenic assays, respectively. Results Oral cancer tissues exhibited aberrant expressions of Beclin 1 and Beclin 2. The cytoplasmic Beclin 1 and Beclin 2 expressions were unrelated in oral cancer tissues. In survival analyses, high cytoplasmic Beclin 1 expression was associated with low disease specific survival, and negative nuclear Beclin 1 expression was associated with high recurrent free survival. Patients with either high or low cytoplasmic Beclin 2 expression had significantly lower overall survival and disease specific survival rates than those with moderate expression. In oral cancer cells, overexpression of either Beclin 1 or Beclin 2 led to autophagy activation and increased clonogenic survival; knockdown of Beclin 2 impaired autophagy and increased clonogenic survival. Conclusions Our results indicated that distinct patterns of Beclin 1 and Beclin 2 were associated with aggressive clinical outcomes. Beclin 1 overexpression, as well as Beclin 2 overexpression and depletion, contributed to tumor growth. These findings suggest Beclin proteins are associated with tumorigenesis.
- Published
- 2015
- Full Text
- View/download PDF
41. Prognostic Value of Tissue Inhibitor of Metalloproteinase-2 Expression in Patients with Non–Small Cell Lung Cancer: A Systematic Review and Meta-Analysis
- Author
-
Xiang-Sheng Xiao, Wei Xu, Weihua Dong, Hong Yu, Shiyuan Liu, Lin Zhu, Tong Zhu, and Yi-Nan Chen
- Subjects
Male ,Oncology ,medicine.medical_specialty ,Prognostic factor ,Pathology ,Lung Neoplasms ,lcsh:Medicine ,Carcinoma, Non-Small-Cell Lung ,Internal medicine ,Biomarkers, Tumor ,medicine ,Humans ,In patient ,lcsh:Science ,Lung cancer ,chemistry.chemical_classification ,Tissue Inhibitor of Metalloproteinase-2 ,Multidisciplinary ,business.industry ,lcsh:R ,Middle Aged ,Tissue inhibitor of metalloproteinase ,Prognosis ,medicine.disease ,Systematic review ,chemistry ,Meta-analysis ,Female ,lcsh:Q ,Non small cell ,business ,Glycoprotein ,Research Article - Abstract
Background and Objectives Tissue inhibitor of metalloproteinase-2 (TIMP-2) is a small secretory glycoprotein with anti–matrix metalloproteinase activity. Data on the value of TIMP-2 as a prognostic factor in non–small cell lung cancer (NSCLC) are discordant and remain controversial. A systematic review and meta-analysis was performed to explore this issue. Methods We identified the relevant literature by searching the PubMed, EMBASE, Web of Science, China National Knowledge Infrastructure, SinoMed, and Wanfang Data databases (search terms: “non-small cell lung cancer” or “NSCLC” or “Lung Carcinoma, Non-Small-Cell”, “Tissue Inhibitor of Metalloproteinase-2” or “TIMP-2”, and “prognosis” or “prognostic” or “survive”) for updates prior to March 1, 2014. The pooled hazard ratio (HR) of overall survival with a 95% confidence interval (95% CI) was used to evaluate the strength of the association between positive TIMP-2 expression and survival in patients with NSCLC. Results We included 12 studies in our systematic review; five studies involving 399 patients with NSCLC were meta-analyzed. The pooled HR of all included patients was 0.57 (95% CI: 0.43–0.77), and the HRs of subgroup analysis according to stage (I–IV), testing method (immunohistochemistry) and high TIMP-2 expression percentage (
- Published
- 2015
- Full Text
- View/download PDF
42. Differential Regulation of Human Aortic Smooth Muscle Cell Proliferation by Monocyte-Derived Macrophages from Diabetic Patients
- Author
-
Hsing-Chun Kuo, Cheng-Nan Chen, Chia-Kuang Yen, Mao-Ling Sung, Shao-Ju Chien, and Te-Chuan Chen
- Subjects
Platelet-derived growth factor ,Cell ,Becaplermin ,lcsh:Medicine ,Smooth Muscle Cells ,Monocytes ,Muscle, Smooth, Vascular ,chemistry.chemical_compound ,Animal Cells ,Medicine and Health Sciences ,Macrophage ,Osteopontin ,lcsh:Science ,Aorta ,Cells, Cultured ,Platelet-Derived Growth Factor ,Lymphokines ,Multidisciplinary ,biology ,Chemistry ,Proto-Oncogene Proteins c-sis ,Middle Aged ,Type 2 Diabetes ,medicine.anatomical_structure ,Cell Processes ,Anatomy ,Cellular Types ,Cyclin-Dependent Kinase Inhibitor p27 ,Research Article ,Adult ,Cyclin-Dependent Kinase Inhibitor p21 ,medicine.medical_specialty ,Muscle Tissue ,Down-Regulation ,Enzyme-Linked Immunosorbent Assay ,Downregulation and upregulation ,Internal medicine ,microRNA ,Diabetes Mellitus ,medicine ,Humans ,Cell Proliferation ,Muscle Cells ,Cell growth ,Macrophages ,lcsh:R ,Lymphokine ,Biology and Life Sciences ,Cell Biology ,MicroRNAs ,Biological Tissue ,Endocrinology ,Diabetes Mellitus, Type 2 ,Metabolic Disorders ,Culture Media, Conditioned ,biology.protein ,lcsh:Q - Abstract
Macrophage accumulation in the arterial wall and smooth muscle cell (SMC) proliferation are features of type 2 diabetes mellitus (DM) and its vascular complications. However, the effects of diabetic monocyte-derived macrophages on vascular SMC proliferation are not clearly understood. In the present study, we investigated the pro-proliferative effect of macrophages isolated from DM patients on vascular SMCs. Macrophage-conditioned media (MCM) were prepared from macrophages isolated from DM patients. DM-MCM treatment induced HASMC proliferation, decreased p21(Cip1) and p27(Kip1) expressions, and increased microRNA (miR)-17-5p and miR-221 expressions. Inhibition of either miR-17-5p or miR-221 inhibited DM-MCM-induced cell proliferation. Inhibition of miR-17-5p abolished DM-MCM-induced p21(Cip1) down-regulation; and inhibition of miR-221 attenuated the DM-MCM-induced p27(Kip1) down-regulation. Furthermore, blocking assays demonstrated that PDGF-CC in DM-MCM is the major mediators of cell proliferation in SMCs. In conclusion, our present data support the hypothesis that SMC proliferation stimulated by macrophages may play critical roles in vascular complications in DM patients and suggest a new mechanism by which arterial disease is accelerated in diabetes.
- Published
- 2014
- Full Text
- View/download PDF
43. HAb18G/CD147 Regulates Vinculin-Mediated Focal Adhesion and Cytoskeleton Organization in Cultured Human Hepatocellular Carcinoma Cells
- Author
-
Zhi-Nan Chen, Jian-Li Jiang, Bao-Qing Xu, Wan Huang, Qing Han, Qiang Liang, and Gang Nan
- Subjects
Phosphatidylinositol 4,5-Diphosphate ,Carcinoma, Hepatocellular ,Cytoskeleton organization ,Immunology ,PTK2 ,lcsh:Medicine ,macromolecular substances ,Biology ,Actin-Related Protein 2-3 Complex ,Cancer Immunotherapy ,Cell membrane ,Focal adhesion ,chemistry.chemical_compound ,Cell Movement ,Cell Line, Tumor ,Cell Adhesion ,medicine ,Humans ,Neoplasm Invasiveness ,Pseudopodia ,RNA, Small Interfering ,lcsh:Science ,Cell adhesion ,Cytoskeleton ,Focal Adhesions ,Multidisciplinary ,Liver Neoplasms ,lcsh:R ,Biology and Life Sciences ,Tyrosine phosphorylation ,Vinculin ,Cell biology ,medicine.anatomical_structure ,chemistry ,Basigin ,biology.protein ,RNA Interference ,Clinical Immunology ,lcsh:Q ,Immunotherapy ,Research Article - Abstract
Focal adhesions (FAs), integrin-mediated macromolecular complexes located at the cell membrane extracellular interface, have been shown to regulate cell adhesion and migration. Our previous studies have indicated that HAb18G/CD147 (CD147) is involved in cytoskeleton reorganization and FA formation in human hepatocellular carcinoma (HCC) cells. However, the precise mechanisms underlying these processes remain unclear. In the current study, we determined that CD147 was involved in vinculin-mediated FA focal adhesion formation in HCC cells. We also found that deletion of CD147 led to reduced vinculin-mediated FA areas (P
- Published
- 2014
- Full Text
- View/download PDF
44. Correction: Probabilistic MRI Brain Anatomical Atlases Based on 1,000 Chinese Subjects
- Author
-
Xing, Wang, primary, Nan, Chen, additional, ZhenTao, Zuo, additional, Rong, Xue, additional, Luo, Jing, additional, Zhuo, Yan, additional, DingGang, Shen, additional, and KunCheng, Li, additional
- Published
- 2013
- Full Text
- View/download PDF
45. Annexin A2 Promotes the Migration and Invasion of Human Hepatocellular Carcinoma Cells In Vitro by Regulating the Shedding of CD147-Harboring Microvesicles from Tumor Cells
- Author
-
Lei Cai, Da-Yong Cao, Kaishan Tao, Zhenshun Song, Zhi-Nan Chen, Xiu-Li Xu, Pu Zhao, Kefeng Dou, Wen-Ping Zhou, and Wei Zhang
- Subjects
Anatomy and Physiology ,Tumor Physiology ,lcsh:Medicine ,Biochemistry ,Metastasis ,Transmembrane Transport Proteins ,Cell membrane ,Cell Movement ,Basic Cancer Research ,lcsh:Science ,Annexin A2 ,Regulation of gene expression ,Extracellular Matrix Proteins ,Multidisciplinary ,Neovascularization, Pathologic ,Liver Neoplasms ,Cell migration ,Cell biology ,Gene Expression Regulation, Neoplastic ,Protein Transport ,Chemistry ,Surgical Oncology ,medicine.anatomical_structure ,Oncology ,Medicine ,RNA Interference ,Oncology Agents ,Cancer Prevention ,Protein Binding ,Research Article ,Cell Physiology ,Carcinoma, Hepatocellular ,Nuclear Chemistry ,Gastroenterology and Hepatology ,Carcinoid Tumor ,Biology ,Cell Line, Tumor ,Chemical Biology ,Gastrointestinal Tumors ,Gastrointestinal Surgery ,medicine ,Humans ,Neoplasm Invasiveness ,Protein Interactions ,Immune Evasion ,Chemical Physics ,Cell Membrane ,lcsh:R ,Proteins ,Cancers and Neoplasms ,Hepatocellular Carcinoma ,Coculture Techniques ,digestive system diseases ,In vitro ,Microvesicles ,Transmembrane Proteins ,Membrane protein ,Cell culture ,Microvessels ,Basigin ,Surgery ,lcsh:Q - Abstract
It has been reported that Annexin A2 (ANXA2) is up-regulated in hepatocellular carcinoma (HCC), but the roles of ANXA2 in the migration and invasion of HCC cells have not been determined. In this study, we found that ANXA2-specific siRNA (si-ANXA2) significantly inhibited the migration and invasion of HCC cells co-cultured with fibroblasts in vitro. In addition, the production of MMP-2 by fibroblasts cultured in supernatant collected from si-ANXA2-transfected HCC cells was notably down-regulated. ANXA2 was also found to be co-localized and co-immunoprecipitated with CD147. Further investigation revealed that the expression of ANXA2 in HCC cells affected the shedding of CD147-harboring membrane microvesicles, acting as a vehicle for CD147 in tumor-stromal interactions and thereby regulating the production of MMP-2 by fibroblasts. Together, these results suggest that ANXA2 enhances the migration and invasion potential of HCC cells in vitro by regulating the trafficking of CD147-harboring membrane microvesicles.
- Published
- 2013
- Full Text
- View/download PDF
46. Human Tumor Cells Induce Angiogenesis through Positive Feedback between CD147 and Insulin-Like Growth Factor-I
- Author
-
Xingchun Gou, Zhi-Nan Chen, Yanke Chen, Hongyong Cui, and Xia Ke
- Subjects
Pathology ,Angiogenesis ,Tumor Physiology ,medicine.medical_treatment ,Cancer Treatment ,lcsh:Medicine ,Matrix metalloproteinase ,Neovascularization ,chemistry.chemical_compound ,Endocrinology ,Basic Cancer Research ,Morphogenesis ,Insulin-Like Growth Factor I ,lcsh:Science ,Insulin-like Growth Factor ,Feedback, Physiological ,Tube formation ,Multidisciplinary ,Neovascularization, Pathologic ,Liver Diseases ,Vascular endothelial growth factor ,Oncology ,Gene Knockdown Techniques ,Medicine ,Antiangiogenesis Therapy ,medicine.symptom ,Research Article ,medicine.medical_specialty ,Immunoglobulins ,Cell Migration ,Gastroenterology and Hepatology ,Biology ,Growth Factors ,Cell Line, Tumor ,Gastrointestinal Tumors ,Human Umbilical Vein Endothelial Cells ,medicine ,Humans ,Endocrine Physiology ,Growth factor ,lcsh:R ,Cancers and Neoplasms ,Hepatocellular Carcinoma ,Hormones ,Coculture Techniques ,chemistry ,Cell culture ,Cancer cell ,Basigin ,Cancer research ,Clinical Immunology ,lcsh:Q ,Developmental Biology - Abstract
Tumor angiogenesis is a complex process based upon a sequence of interactions between tumor cells and endothelial cells. Previous studies have shown that CD147 was correlated with tumor angiogenesis through increasing tumor cell secretion of vascular endothelial growth factor (VEGF) and matrix metalloproteinases (MMPs). In this study, we made a three-dimensional (3D) tumor angiogenesis model using a co-culture system of human hepatocellular carcinoma cells SMMC-7721 and humanumbilical vein endothelial cells (HUVECs) in vitro. We found that CD147-expressing cancer cells could promote HUVECs to form net-like structures resembling the neo-vasculature, whereas the ability of proliferation, migration and tube formation of HUVECs was significantly decreased in tumor conditioned medium (TCM) of SMMC-7721 cells transfected with specific CD147-siRNA. Furthermore, by assaying the change of pro-angiogenic factors in TCM, we found that the inhibition of CD147 expression led to significant decrease of VEGF and insulin-like growth factor-I (IGF-I) secretion. Interestingly, we also found that IGF-I up-regulated the expression of CD147 in both tumor cells and HUVECs. These findings suggest that there is a positive feedback between CD147 and IGF-I at the tumor-endothelial interface and CD147 initiates the formation of an angiogenesis niche.
- Published
- 2012
- Full Text
- View/download PDF
47. A Meta-Analysis of Array-CGH Studies Implicates Antiviral Immunity Pathways in the Development of Hepatocellular Carcinoma
- Author
-
Zhi-Nan Chen, Xu Guo, Yanna, Qichao Huang, Yu-Kui Shang, Xi Ma, Hushan Yang, Jinliang Xing, and Jiaze An
- Subjects
Carcinoma, Hepatocellular ,lcsh:Medicine ,Gastroenterology and Hepatology ,Biology ,Chromosomal Disorders ,Databases, Genetic ,Gastrointestinal Tumors ,Genetics ,Cancer Genetics ,medicine ,Carcinoma ,Humans ,KEGG ,lcsh:Science ,Gene ,Chromosome Aberrations ,Clinical Genetics ,Comparative genomics ,Comparative Genomic Hybridization ,Multidisciplinary ,Liver Diseases ,Liver Neoplasms ,lcsh:R ,Chromosomal Deletions and Duplications ,Cancers and Neoplasms ,Chromosome ,Human Genetics ,Hepatocellular Carcinoma ,HCCS ,medicine.disease ,Oncology ,Hepatocellular carcinoma ,Medicine ,lcsh:Q ,Precancerous Conditions ,Genes, Neoplasm ,Signal Transduction ,Research Article ,Comparative genomic hybridization - Abstract
Background The development and progression of hepatocellular carcinoma (HCC) is significantly correlated to the accumulation of genomic alterations. Array-based comparative genomic hybridization (array CGH) has been applied to a wide range of tumors including HCCs for the genome-wide high resolution screening of DNA copy number changes. However, the relevant chromosomal variations that play a central role in the development of HCC still are not fully elucidated. Methods In present study, in order to further characterize the copy number alterations (CNAs) important to HCC development, we conducted a meta-analysis of four published independent array-CGH datasets including total 159 samples. Results Eighty five significant gains (frequency ≥25%) were mostly mapped to five broad chromosomal regions including 1q, 6p, 8q, 17q and 20p, as well as two narrow regions 5p15.33 and 9q34.2-34.3. Eighty eight significant losses (frequency ≥25%) were most frequently present in 4q, 6q, 8p, 9p, 13q, 14q, 16q, and 17p. Significant correlations existed between chromosomal aberrations either located on the same chromosome or the different chromosomes. HCCs with different etiologies largely exhibited surprisingly similar profiles of chromosomal aberrations with only a few exceptions. Furthermore, the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis indicated that the genes affected by these chromosomal aberrations were significantly enriched in 31 canonical pathways with the highest enrichment observed for antiviral immunity pathways. Conclusions Taken together, our findings provide novel and important clues for the implications of antiviral immunity-related gene pathways in the pathogenesis and progression of HCC.
- Published
- 2011
- Full Text
- View/download PDF
48. RNA-Seq Analyses Generate Comprehensive Transcriptomic Landscape and Reveal Complex Transcript Patterns in Hepatocellular Carcinoma.
- Author
-
Qichao Huang, Biaoyang Lin, Hanqiang Liu, Xi Ma, Fan Mo, Wei Yu, Lisha Li, Hongwei Li, Tian Tian, Dong Wu, Feng Shen, Jinliang Xing, and Zhi-Nan Chen
- Subjects
NUCLEOTIDE sequence ,LIVER cancer ,GENETIC transcription ,RIBOSE ,BIOCHEMISTRY - Abstract
RNA-seq is a powerful tool for comprehensive characterization of whole transcriptome at both gene and exon levels and with a unique ability of identifying novel splicing variants. To date, RNA-seq analysis of HBV-related hepatocellular carcinoma (HCC) has not been reported. In this study, we performed transcriptome analyses for 10 matched pairs of cancer and non-cancerous tissues from HCC patients on Solexa/Illumina GAII platform. On average, about 21.6 million sequencing reads and 10.6 million aligned reads were obtained for samples sequenced on each lane, which was able to identify >50% of all the annotated genes for each sample. Furthermore, we identified 1,378 significantly differently expressed genes (DEGs) and 24, 338 differentially expressed exons (DEEs). Comprehensive function analyses indicated that cell growthrelated, metabolism-related and immune-related pathways were most significantly enriched by DEGs, pointing to a complex mechanism for HCC carcinogenesis. Positional gene enrichment analysis showed that DEGs were most significantly enriched at chromosome 8q21.3-24.3. The most interesting findings were from the analysis at exon levels where we characterized three major patterns of expression changes between gene and exon levels, implying a much complex landscape of transcript-specific differential expressions in HCC. Finally, we identified a novel highly up-regulated exon-exon junction in ATAD2 gene in HCC tissues. Overall, to our best knowledge, our study represents the most comprehensive characterization of HBV-related HCC transcriptome including exon level expression changes and novel splicing variants, which illustrated the power of RNA-seq and provided important clues for understanding the molecular mechanisms of HCC pathogenesis at system-wide levels. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
49. Porphyrin Homeostasis Maintained by ABCG2 Regulates Self-Renewal of Embryonic Stem Cells.
- Author
-
Susanto, Jimmy, Yu-Hsing Lin, Yun-Nan Chen, Chia-Rui Shen, Yu-Ting Yan, Sheng-Ta Tsai, Chung-Hsuan Chen, and Chia-Ning Shen
- Subjects
PORPHYRINS ,HOMEOSTASIS ,EMBRYONIC stem cells ,STEM cells ,CELL cycle ,DNA damage ,RNA - Abstract
Background: Under appropriate culture conditions, undifferentiated embryonic stem (ES) cells can undergo multiple selfrenewal cycles without loss of pluripotency suggesting they must be equipped with specific defense mechanisms to ensure sufficient genetic stability during self-renewal expansion. The ATP binding cassette transporter ABCG2 is expressed in a wide variety of somatic and embryonic stem cells. However, whether it plays an important role in stem cell maintenance remains to be defined. Methodology/Principal Findings: Here we provide evidence to show that an increase in the level of ABCG2 was observed accompanied by ES colony expansion and then were followed by decreases in the level of protoporphyrin IX (PPIX) indicating that ABCG2 plays a role in maintaining porphyrin homoeostasis. RNA-interference mediated inhibition of ABCG2 as well as functional blockage of ABCG2 transporter with fumitremorgin C (FTC), a specific and potent inhibitor of ABCG2, not only elevated the cellular level of PPIX, but also arrest the cell cycle and reduced expression of the pluripotent gene Nanog. Overexpression of ABCG2 in ES cells was able to counteract the increase of endogenous PPIX induced by treatment with 5- Aminolevulinic acid suggesting ABCG2 played a direct role in removal of PPIX from ES cells. We also found that excess PPIX in ES cells led to elevated levels of reactive oxygen species which in turn triggered DNA damage signals as indicated by increased levels of γH2AX and phosphorylated p53. The increased level of p53 reduced Nanog expression because RNA- interference mediated inhibition of p53 was able to prevent the downregulation of Nanog induced by FTC treatment. Conclusions/Significance: The present work demonstrated that ABCG2 protects ES cells from PPIX accumulation during colony expansion, and that p53 and γH2AX acts as a downstream checkpoint of ABCG2-dependent defense machinery in order to maintain the self-renewal of ES cells. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
50. Proteus mirabilis inhibits cancer growth and pulmonary metastasis in a mouse breast cancer model.
- Author
-
Hong Zhang, Hongxiu Diao, Lixin Jia, Yujing Yuan, Douglas H Thamm, Huanan Wang, Yipeng Jin, Shimin Pei, Bin Zhou, Fang Yu, Linna Zhao, Nan Cheng, Hongchao Du, Ying Huang, Di Zhang, and Degui Lin
- Subjects
Medicine ,Science - Abstract
A variety of bacteria have been used as agents and vectors for antineoplastic therapy. A series of mechanisms, including native bacterial toxicity, sensitization of the immune system and competition for nutrients, may contribute to antitumor effects. However, the antitumor effects of Proteus species have been minimally studied, and it is not clear if bacteria can alter tumor hypoxia as a component of their antineoplastic effect. In the present study, Proteus mirabilis bacteria were evaluated for the ability to proliferate and accumulate in murine tumors after intravenous injection. To further investigate the efficacy and safety of bacterial injection, mice bearing 4T1 tumors were treated with an intravenous dose of 5×107 CFU Proteus mirabilis bacteria via the tail vein weekly for three treatments. Histopathology, immunohistochemistry (IHC) and western analysis were then performed on excised tumors. The results suggested Proteus mirabilis localized preferentially to tumor tissues and remarkably suppressed the growth of primary breast cancer and pulmonary metastasis in murine 4T1 models. Results showed that the expression of NKp46 and CD11c was significantly increased after bacteria treatment. Furthermore, tumor expression of carbonic anhydrase IX (CA IX) and hypoxia inducible factor-1a (HIF-1a), surrogates for hypoxia, was significantly lower in the treated group than the control group mice as assessed by IHC and western analysis. These findings demonstrated that Proteus mirabilis may a promising bacterial strain for used against primary tumor growth and pulmonary metastasis, and the immune system and reduction of tumor hypoxia may contribute to the antineoplastic and antimetastatic effects observed.
- Published
- 2017
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.