8 results on '"Jaeger, Johannes"'
Search Results
2. A Staging Scheme for the Development of the Moth Midge Clogmia albipunctata
- Author
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Jiménez-Guri, Eva, primary, Wotton, Karl R., additional, Gavilán, Brenda, additional, and Jaeger, Johannes, additional
- Published
- 2014
- Full Text
- View/download PDF
3. Medium-Throughput Processing of Whole Mount In Situ Hybridisation Experiments into Gene Expression Domains
- Author
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Crombach, Anton, primary, Cicin-Sain, Damjan, additional, Wotton, Karl R., additional, and Jaeger, Johannes, additional
- Published
- 2012
- Full Text
- View/download PDF
4. A Staging Scheme for the Development of the Moth Midge Clogmia albipunctata.
- Author
-
Jiménez-Guri, Eva, Wotton, Karl R., Gavilán, Brenda, and Jaeger, Johannes
- Subjects
MOTH flies ,DROSOPHILA as laboratory animals ,LIFE cycles (Biology) ,DEVELOPMENTAL biology ,BIOLOGICAL evolution ,EMBRYOLOGY ,MORPHOGENESIS - Abstract
Model organisms, such as Drosophila melanogaster, allow us to address a wide range of biological questions with experimental rigour. However, studies in model species need to be complemented by comparative studies if we are to fully understand the functional properties and evolutionary history of developmental processes. The establishment of new model organisms is crucial for this purpose. One of the first essential steps to establish a species as an experimental model is to carefully describe its life cycle and development. The resulting staging scheme serves as a framework for molecular studies, and allows us to homologise developmental processes between species. In this paper, we have characterised the life cycle and development of an emerging non-drosophilid dipteran model system: the moth midge Clogmia albipunctata. In particular, we focus on early embryogenesis (cleavage and blastoderm cycles before gastrulation), on formation and retraction of extraembryonic tissues, and on formation of the germ line. Considering the large evolutionary distance between the two species (approximately 250 million years), we find that the development of C. albipunctata is remarkably conserved compared to D. melanogaster. On the other hand, we detect significant differences in morphology and timing affecting the development of extraembryonic tissues and the germ line. Moreover, C. albipunctata shows several heterochronic shifts, and lacks head involution and associated processes during late stages of development. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
5. A Staging Scheme for the Development of the Scuttle Fly Megaselia abdita.
- Author
-
Wotton, Karl R., Jiménez-Guri, Eva, García Matheu, Belén, and Jaeger, Johannes
- Subjects
DROSOPHILA as laboratory animals ,LIFE cycles (Biology) ,COMPARATIVE anatomy ,DEVELOPMENTAL biology ,BIOLOGICAL evolution ,ANIMAL morphology ,EMBRYOLOGY ,MEGASELIA - Abstract
Model organisms, such as Drosophila melanogaster, provide powerful experimental tools for the study of development. However, approaches using model systems need to be complemented by comparative studies for us to gain a deeper understanding of the functional properties and evolution of developmental processes. New model organisms need to be established to enable such comparative work. The establishment of new model system requires a detailed description of its life cycle and development. The resulting staging scheme is essential for providing morphological context for molecular studies, and allows us to homologise developmental processes between species. In this paper, we provide a staging scheme and morphological characterisation of the life cycle for an emerging non-drosophilid dipteran model system: the scuttle fly Megaselia abdita. We pay particular attention to early embryogenesis (cleavage and blastoderm stages up to gastrulation), the formation and retraction of extraembryonic tissues, and the determination and formation of germ (pole) cells. Despite the large evolutionary distance between the two species (approximately 150 million years), we find that M. abdita development is remarkably similar to D. melanogaster in terms of developmental landmarks and their relative timing. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
6. A Staging Scheme for the Development of the Moth Midge Clogmia albipunctata.
- Author
-
Jiménez-Guri, Eva, Wotton, Karl R., Gavilán, Brenda, and Jaeger, Johannes
- Subjects
- *
MOTH flies , *DROSOPHILA as laboratory animals , *LIFE cycles (Biology) , *DEVELOPMENTAL biology , *BIOLOGICAL evolution , *EMBRYOLOGY , *MORPHOGENESIS - Abstract
Model organisms, such as Drosophila melanogaster, allow us to address a wide range of biological questions with experimental rigour. However, studies in model species need to be complemented by comparative studies if we are to fully understand the functional properties and evolutionary history of developmental processes. The establishment of new model organisms is crucial for this purpose. One of the first essential steps to establish a species as an experimental model is to carefully describe its life cycle and development. The resulting staging scheme serves as a framework for molecular studies, and allows us to homologise developmental processes between species. In this paper, we have characterised the life cycle and development of an emerging non-drosophilid dipteran model system: the moth midge Clogmia albipunctata. In particular, we focus on early embryogenesis (cleavage and blastoderm cycles before gastrulation), on formation and retraction of extraembryonic tissues, and on formation of the germ line. Considering the large evolutionary distance between the two species (approximately 250 million years), we find that the development of C. albipunctata is remarkably conserved compared to D. melanogaster. On the other hand, we detect significant differences in morphology and timing affecting the development of extraembryonic tissues and the germ line. Moreover, C. albipunctata shows several heterochronic shifts, and lacks head involution and associated processes during late stages of development. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
7. A Staging Scheme for the Development of the Scuttle Fly Megaselia abdita.
- Author
-
Wotton, Karl R., Jiménez-Guri, Eva, García Matheu, Belén, and Jaeger, Johannes
- Subjects
- *
DROSOPHILA as laboratory animals , *LIFE cycles (Biology) , *COMPARATIVE anatomy , *DEVELOPMENTAL biology , *BIOLOGICAL evolution , *ANIMAL morphology , *EMBRYOLOGY , *MEGASELIA - Abstract
Model organisms, such as Drosophila melanogaster, provide powerful experimental tools for the study of development. However, approaches using model systems need to be complemented by comparative studies for us to gain a deeper understanding of the functional properties and evolution of developmental processes. New model organisms need to be established to enable such comparative work. The establishment of new model system requires a detailed description of its life cycle and development. The resulting staging scheme is essential for providing morphological context for molecular studies, and allows us to homologise developmental processes between species. In this paper, we provide a staging scheme and morphological characterisation of the life cycle for an emerging non-drosophilid dipteran model system: the scuttle fly Megaselia abdita. We pay particular attention to early embryogenesis (cleavage and blastoderm stages up to gastrulation), the formation and retraction of extraembryonic tissues, and the determination and formation of germ (pole) cells. Despite the large evolutionary distance between the two species (approximately 150 million years), we find that M. abdita development is remarkably similar to D. melanogaster in terms of developmental landmarks and their relative timing. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
8. Analysis of Gap Gene Regulation in a 3D Organism-Scale Model of the Drosophila melanogaster Embryo
- Author
-
David M. Umulis, Ann E. Rundell, Michael Gribskov, Charless C. Fowlkes, James B. Hengenius, and Jaeger, Johannes
- Subjects
Embryology ,Embryo, Nonmammalian ,zygotic loci ,larval cuticle ,Genes, Insect ,hunchback ,parameter-estimation ,Biophysics Simulations ,positional information ,Segmentation ,0302 clinical medicine ,Models ,Gene expression ,Biochemical Simulations ,Morphogenesis ,Drosophila Proteins ,Developmental ,Pattern Formation ,Regulation of gene expression ,Genetics ,0303 health sciences ,Nonmammalian ,Multidisciplinary ,biology ,Systems Biology ,Physics ,Life Sciences ,Gene Expression Regulation, Developmental ,Drosophila embryogenesis ,Drosophila melanogaster ,morphogen gradient ,Embryo ,Medicine ,Biophysic Al Simulations ,Research Article ,Morphogen ,animal structures ,General Science & Technology ,Science ,Biophysics ,Pattern formation ,Computational biology ,03 medical and health sciences ,bicoid protein ,Genetic ,expression ,Animals ,Biology ,Gene ,Gap gene ,030304 developmental biology ,Regulatory Networks ,Homeodomain Proteins ,Models, Genetic ,segmentation ,Human Genome ,Computational Biology ,Body Plan Organization ,biology.organism_classification ,pattern-formation ,Gene Expression Regulation ,Genes ,Trans-Activators ,Insect ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
The axial bodyplan of Drosophila melanogaster is determined during a process called morphogenesis. Shortly after fertilization, maternal bicoid mRNA is translated into Bicoid (Bcd). This protein establishes a spatially graded morphogen distribution along the anterior-posterior (AP) axis of the embryo. Bcd initiates AP axis determination by triggering expression of gap genes that subsequently regulate each other's expression to form a precisely controlled spatial distribution of gene products. Reaction-diffusion models of gap gene expression on a 1D domain have previously been used to infer complex genetic regulatory network (GRN) interactions by optimizing model parameters with respect to 1D gap gene expression data. Here we construct a finite element reaction-diffusion model with a realistic 3D geometry fit to full 3D gap gene expression data. Though gap gene products exhibit dorsal-ventral asymmetries, we discover that previously inferred gap GRNs yield qualitatively correct AP distributions on the 3D domain only when DV-symmetric initial conditions are employed. Model patterning loses qualitative agreement with experimental data when we incorporate a realistic DV-asymmetric distribution of Bcd. Further, we find that geometry alone is insufficient to account for DV-asymmetries in the final gap gene distribution. Additional GRN optimization confirms that the 3D model remains sensitive to GRN parameter perturbations. Finally, we find that incorporation of 3D data in simulation and optimization does not constrain the search space or improve optimization results.
- Published
- 2011
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