18 results on '"Bin Fang"'
Search Results
2. A high-throughput cigarette smoke-treated bronchosphere model for disease-relevant phenotypic compound screening
- Author
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Pranjali Beri, Young Jae Woo, Katie Schierenbeck, Kaisheng Chen, S. Whitney Barnes, Olivia Ross, Douglas Krutil, Doug Quackenbush, Bin Fang, John Walker, William Barnes, and Erin Quan Toyama
- Subjects
Medicine ,Science - Abstract
Cigarette smoking (CS) is the leading cause of COPD, and identifying the pathways that are driving pathogenesis in the airway due to CS exposure can aid in the discovery of novel therapies for COPD. An additional barrier to the identification of key pathways that are involved in the CS-induced pathogenesis is the difficulty in building relevant and high throughput models that can recapitulate the phenotypic and transcriptomic changes associated with CS exposure. To identify these drivers, we have developed a cigarette smoke extract (CSE)-treated bronchosphere assay in 384-well plate format that exhibits CSE-induced decreases in size and increase in luminal secretion of MUC5AC. Transcriptomic changes in CSE-treated bronchospheres resemble changes that occur in human smokers both with and without COPD compared to healthy groups, indicating that this model can capture human smoking signature. To identify new targets, we ran a small molecule compound deck screening with diversity in target mechanisms of action and identified hit compounds that attenuated CSE induced changes, either decreasing spheroid size or increasing secreted mucus. This work provides insight into the utility of this bronchopshere model to examine human respiratory disease impacted by CSE exposure and the ability to screen for therapeutics to reverse the pathogenic changes caused by CSE.
- Published
- 2023
3. Ternary regulation mechanism of Rhizoma drynariae total flavonoids on induced membrane formation and bone remodeling in Masquelet technique
- Author
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Ding Li, Dun Zhao, Zhikui Zeng, Feng Huang, Ziwei Jiang, Hao Xiong, Tianan Guan, Bin Fang, and Yue Li
- Subjects
Medicine ,Science - Abstract
Context Rhizoma drynariae total flavonoids (RDTF) are used to treat fractures. CD31hiEmcnhi vessels induced by PDGF-BB secreted by osteoclast precursors, together with osteoblasts and osteoclasts, constitute the ternary regulatory mechanism of bone tissue reconstruction. Objective This study aimed to determine whether RDTF can promote bone tissue remodeling and induce membrane growth in the rat Masquelet model and to explore its molecular mechanism based on the ternary regulation theory. Methods Thirty-six SD rats were randomized to three groups: blank, induced membrane, and RDTF treatment (n = 12/group). The gross morphological characteristics of the new bone tissue were observed after 6 weeks. Sixty SD rats were also randomized to five groups: blank, induction membrane, low-dose RDTF, medium-dose RDTF, and high-dose RDTF (n = 12/group). After 4 weeks, immunohistochemistry and western blot were used to detect the expression of membrane tissue-related proteins. The mRNA expression of key factors of ternary regulation was analyzed by qRT-PCR. Results RDTF positively affected angiogenesis and bone tissue reconstruction in the bone defect area. RDTF could upregulate the expression of key factors (PDGF-BB, CD31, and endomucin), VEGF, and HMGB1 mRNA and proteins in the ternary regulation pathway. Discussion and conclusion Although the expected CD31hiEmcnhi vessels in the induction membrane were not observed, this study confirmed that RDTF could promote the secretion of angiogenic factors in the induced membrane. The specific mechanisms still need to be further studied.
- Published
- 2022
4. The Influences of Drought and Land-Cover Conversion on Inter-Annual Variation of NPP in the Three-North Shelterbelt Program Zone of China Based on MODIS Data.
- Author
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Dailiang Peng, Chaoyang Wu, Bing Zhang, Alfredo Huete, Xiaoyang Zhang, Rui Sun, Liping Lei, Wenjing Huang, Liangyun Liu, Xinjie Liu, Jun Li, Shezhou Luo, and Bin Fang
- Subjects
Medicine ,Science - Abstract
Terrestrial ecosystems greatly contribute to carbon (C) emission reduction targets through photosynthetic C uptake.Net primary production (NPP) represents the amount of atmospheric C fixed by plants and accumulated as biomass. The Three-North Shelterbelt Program (TNSP) zone accounts for more than 40% of China's landmass. This zone has been the scene of several large-scale ecological restoration efforts since the late 1990s, and has witnessed significant changes in climate and human activities.Assessing the relative roles of different causal factors on NPP variability in TNSP zone is very important for establishing reasonable local policies to realize the emission reduction targets for central government. In this study, we examined the relative roles of drought and land cover conversion(LCC) on inter-annual changes of TNSP zone for 2001-2010. We applied integrated correlation and decomposition analyses to a Standardized Evapotranspiration Index (SPEI) and MODIS land cover dataset. Our results show that the 10-year average NPP within this region was about 420 Tg C. We found that about 60% of total annual NPP over the study area was significantly correlated with SPEI (p
- Published
- 2016
- Full Text
- View/download PDF
5. A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma.
- Author
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Paul A Stewart, Katja Parapatics, Eric A Welsh, André C Müller, Haoyun Cao, Bin Fang, John M Koomen, Steven A Eschrich, Keiryn L Bennett, and Eric B Haura
- Subjects
Medicine ,Science - Abstract
We performed a pilot proteogenomic study to compare lung adenocarcinoma to lung squamous cell carcinoma using quantitative proteomics (6-plex TMT) combined with a customized Affymetrix GeneChip. Using MaxQuant software, we identified 51,001 unique peptides that mapped to 7,241 unique proteins and from these identified 6,373 genes with matching protein expression for further analysis. We found a minor correlation between gene expression and protein expression; both datasets were able to independently recapitulate known differences between the adenocarcinoma and squamous cell carcinoma subtypes. We found 565 proteins and 629 genes to be differentially expressed between adenocarcinoma and squamous cell carcinoma, with 113 of these consistently differentially expressed at both the gene and protein levels. We then compared our results to published adenocarcinoma versus squamous cell carcinoma proteomic data that we also processed with MaxQuant. We selected two proteins consistently overexpressed in squamous cell carcinoma in all studies, MCT1 (SLC16A1) and GLUT1 (SLC2A1), for further investigation. We found differential expression of these same proteins at the gene level in our study as well as in other public gene expression datasets. These findings combined with survival analysis of public datasets suggest that MCT1 and GLUT1 may be potential prognostic markers in adenocarcinoma and druggable targets in squamous cell carcinoma. Data are available via ProteomeXchange with identifier PXD002622.
- Published
- 2015
- Full Text
- View/download PDF
6. TaCIPK29, a CBL-interacting protein kinase gene from wheat, confers salt stress tolerance in transgenic tobacco.
- Author
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Xiaomin Deng, Wei Hu, Shuya Wei, Shiyi Zhou, Fan Zhang, Jiapeng Han, Lihong Chen, Yin Li, Jialu Feng, Bin Fang, Qingchen Luo, Shasha Li, Yunyi Liu, Guangxiao Yang, and Guangyuan He
- Subjects
Medicine ,Science - Abstract
Calcineurin B-like protein-interacting protein kinases (CIPKs) have been found to be responsive to abiotic stress. However, their precise functions and the related molecular mechanisms in abiotic stress tolerance are not completely understood, especially in wheat. In the present study, TaCIPK29 was identified as a new member of CIPK gene family in wheat. TaCIPK29 transcript increased after NaCl, cold, methyl viologen (MV), abscisic acid (ABA) and ethylene treatments. Over-expression of TaCIPK29 in tobacco resulted in increased salt tolerance, which was demonstrated by higher germination rates, longer root lengths and better growth status of transgenic tobacco plants compared to controls when both were treated with salt stress. Physiological measurements indicated that transgenic tobacco seedlings retained high K(+)/Na(+) ratios and Ca(2+) content by up-regulating some transporter genes expression and also possessed lower H2O2 levels and reduced membrane injury by increasing the expression and activities of catalase (CAT) and peroxidase (POD) under salt stress. Moreover, transgenic lines conferred tolerance to oxidative stress by increasing the activity and expression of CAT. Finally, TaCIPK29 was located throughout cells and it preferentially interacted with TaCBL2, TaCBL3, NtCBL2, NtCBL3 and NtCAT1. Taken together, our results showed that TaCIPK29 functions as a positive factor under salt stress and is involved in regulating cations and reactive oxygen species (ROS) homeostasis.
- Published
- 2013
- Full Text
- View/download PDF
7. Ack1 mediated AKT/PKB tyrosine 176 phosphorylation regulates its activation.
- Author
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Kiran Mahajan, Domenico Coppola, Sridevi Challa, Bin Fang, Y Ann Chen, Weiwei Zhu, Alexis S Lopez, John Koomen, Robert W Engelman, Charlene Rivera, Rebecca S Muraoka-Cook, Jin Q Cheng, Ernst Schönbrunn, Said M Sebti, H Shelton Earp, and Nupam P Mahajan
- Subjects
Medicine ,Science - Abstract
The AKT/PKB kinase is a key signaling component of one of the most frequently activated pathways in cancer and is a major target of cancer drug development. Most studies have focused on its activation by Receptor Tyrosine Kinase (RTK) mediated Phosphatidylinositol-3-OH kinase (PI3K) activation or loss of Phosphatase and Tensin homolog (PTEN). We have uncovered that growth factors binding to RTKs lead to activation of a non-receptor tyrosine kinase, Ack1 (also known as ACK or TNK2), which directly phosphorylates AKT at an evolutionarily conserved tyrosine 176 in the kinase domain. Tyr176-phosphorylated AKT localizes to the plasma membrane and promotes Thr308/Ser473-phosphorylation leading to AKT activation. Mice expressing activated Ack1 specifically in the prostate exhibit AKT Tyr176-phosphorylation and develop murine prostatic intraepithelial neoplasia (mPINs). Further, expression levels of Tyr176-phosphorylated-AKT and Tyr284-phosphorylated-Ack1 were positively correlated with the severity of disease progression, and inversely correlated with the survival of breast cancer patients. Thus, RTK/Ack1/AKT pathway provides a novel target for drug discovery.
- Published
- 2010
- Full Text
- View/download PDF
8. The correlation between serum albumin and diabetic retinopathy among people with type 2 diabetes mellitus: NHANES 2011–2020
- Author
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Gao-Xiang Wang, Ze-Bin Fang, Jun-Tong Li, Bao-Li Huang, De-Liang Liu, Shu-Fang Chu, and Hui-Lin Li
- Subjects
Diabetic Retinopathy ,Multidisciplinary ,Diabetes Mellitus, Type 2 ,Risk Factors ,Humans ,Nutrition Surveys ,Serum Albumin - Abstract
Objectives The objective of this research aimed to investigate the correlation involving serum albumin with diabetic retinopathy (DR) in patients with type 2 diabetes mellitus (T2DM). Methods From 2011 to 2020, the National Health and Nutrition Examination Survey (NHANES) surveyed 45462 participants. We used the relevant data to conduct descriptive statistics, linear regression, and Logistic regression analysis. Results After adjusting for age, sex, and race, as well as all other variables, serum albumin was significantly negatively related to DR (P0.05). Conclusion Albumin levels in the serum have a quantitatively significant negative correlation with DR. Serum albumin levels in the blood can be used as a reference point for protracted follow-up of people with T2DM.
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- 2022
- Full Text
- View/download PDF
9. The Influences of Drought and Land-Cover Conversion on Inter-Annual Variation of NPP in the Three-North Shelterbelt Program Zone of China Based on MODIS Data
- Author
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Bing Zhang, Shezhou Luo, Xiaoyang Zhang, Wenjing Huang, Alfredo Huete, Xinjie Liu, Dailiang Peng, Bin Fang, Chaoyang Wu, Jun Li, Rui Sun, Liangyun Liu, and Liping Lei
- Subjects
Atmospheric Science ,010504 meteorology & atmospheric sciences ,Rain ,Climate ,lcsh:Medicine ,Plant Science ,010501 environmental sciences ,Forests ,01 natural sciences ,Geographical Locations ,Evapotranspiration ,Human Activities ,Biomass ,lcsh:Science ,Biomass (ecology) ,Multidisciplinary ,Ecology ,Agriculture ,Terrestrial Environments ,Droughts ,Grasslands ,Terrestrial ecosystem ,Algorithms ,Research Article ,Land cover ,China ,Livestock ,Asia ,Forest Ecology ,General Science & Technology ,Environmental engineering ,Climate change ,Ecosystems ,Meteorology ,Forest ecology ,Humans ,Plant Communities ,Ecosystem ,0105 earth and related environmental sciences ,Land use ,Drought ,Plant Ecology ,lcsh:R ,Ecology and Environmental Sciences ,FOS: Environmental engineering ,Primary production ,Biology and Life Sciences ,Restoration Ecology ,Reproducibility of Results ,Models, Theoretical ,Carbon ,Environmental sciences ,MODIS (Spectroradiometer) ,People and Places ,Earth Sciences ,Environmental science ,lcsh:Q ,Physical geography - Abstract
© 2016, Public Library of Science. All rights reserved. This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication. Terrestrial ecosystems greatly contribute to carbon (C) emission reduction targets through photosynthetic C uptake.Net primary production (NPP) represents the amount of atmospheric C fixed by plants and accumulated as biomass. The Three-North Shelterbelt Program (TNSP) zone accounts for more than 40% of China's landmass. This zone has been the scene of several large-scale ecological restoration efforts since the late 1990s, and has witnessed significant changes in climate and human activities.Assessing the relative roles of different causal factors on NPP variability in TNSP zone is very important for establishing reasonable local policies to realize the emission reduction targets for central government. In this study, we examined the relative roles of drought and land cover conversion(LCC) on inter-annual changes of TNSP zone for 2001-2010. We applied integrated correlation and decomposition analyses to a Standardized Evapotranspiration Index (SPEI) and MODIS land cover dataset. Our results show that the 10-year average NPP within this region was about 420 Tg C. We found that about 60% of total annual NPP over the study area was significantly correlated with SPEI (p
- Published
- 2016
10. Impacts of Salmonella enterica Serovar Typhimurium and Its speG Gene on the Transcriptomes of In Vitro M Cells and Caco-2 Cells
- Author
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Ke Chuan Wang, Ching Jou Huang, Shiuh Bin Fang, and Chih-Hung Huang
- Subjects
Salmonella typhimurium ,Bacterial Diseases ,0301 basic medicine ,Salmonellosis ,Microarrays ,Cell Lines ,Mutant ,Gene Expression ,lcsh:Medicine ,Pathology and Laboratory Medicine ,Epithelium ,Transcriptome ,0302 clinical medicine ,Salmonella ,Animal Cells ,Medicine and Health Sciences ,Intestinal Mucosa ,lcsh:Science ,Immune Response ,Cells, Cultured ,Microfold cell ,Multidisciplinary ,Virulence ,High-Throughput Nucleotide Sequencing ,Bacterial Pathogens ,Intestines ,Infectious Diseases ,Bioassays and Physiological Analysis ,Medical Microbiology ,Salmonella Infections ,Interleukin 12 ,Tumor necrosis factor alpha ,Biological Cultures ,Pathogens ,Anatomy ,Cellular Types ,Research Article ,Cell type ,Immunology ,In Vitro Techniques ,Biology ,Research and Analysis Methods ,Microbiology ,03 medical and health sciences ,Signs and Symptoms ,Immune system ,Bacterial Proteins ,Enterobacteriaceae ,Diagnostic Medicine ,Genetics ,Humans ,Microbial Pathogens ,Inflammation ,Bacteria ,Cell Membrane ,lcsh:R ,Organisms ,Biology and Life Sciences ,Epithelial Cells ,Cell Biology ,In vitro ,Gastrointestinal Tract ,Biological Tissue ,030104 developmental biology ,lcsh:Q ,Caco-2 Cells ,Digestive System ,030215 immunology - Abstract
Microfold or membranous (M) cells are specialized intestinal epithelial cells responsible for host immunity. The speG mutant of Salmonella Typhimurium (S. Typhimurium) is a nonreplicating strain within human cells to be a candidate vaccine vector for interacting with M cells. We conducted this study to identify the genes are differently expressed between in vitro M cells and Caco-2 cells, and to determine whether S. Typhimurium and speG affect the transcriptomes of both cell types. In vitro M cells and Caco-2 cells were infected with wild-type (WT) S. Typhimurium, its ΔspeG mutant, or none for 1 h for RNA microarrays; the transcriptomes among the 6 pools were pairwisely compared. Genetic loci encoding scaffold (e.g., HSCHR7_CTG4_4, HSCHR9_CTG9_35), long noncoding RNA, membrane-associated protein (PITPNB), neuron-related proteins (OR8D1, OR10G9, and NTNG2), and transporter proteins (MICU2 and SLC28A1) were significantly upregulated in uninfected M cells compared with uninfected Caco-2 cells; and their encoding proteins are promising M-cell markers. Significantly upregulated HSCHR7_CTG4_4 of uninfected in vitro M cells were speG-independently downregulated by S. Typhimurium infection that is a remarkable change representing an important but unreported characteristic of M cells. The immune responses of in vitro M cells and Caco-2 cells can differ and reply on speG or not, with speG-dependent regulation of KYL4, SCTR, IL6, TNF, and CELF4 in Caco-2 cells, JUN, KLF6, and KCTD11 in M cells, or speG-independent modulation of ZFP36 in both cells. This study facilitates understanding of the immune responses of in vitro M cells after administering the S. Typhimurium ΔspeG mutant as a future vaccine vector.
- Published
- 2016
11. A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma
- Author
-
Haoyun Cao, Steven A. Eschrich, Eric A. Welsh, Paul A. Stewart, Eric B. Haura, Keiryn L. Bennett, Bin Fang, John M. Koomen, André C. Müller, and Katja Parapatics
- Subjects
Male ,Monocarboxylic Acid Transporters ,Proteomics ,Lung Neoplasms ,Quantitative proteomics ,Gene Expression ,lcsh:Medicine ,Adenocarcinoma of Lung ,Pilot Projects ,Biology ,Adenocarcinoma ,Gene expression ,medicine ,Carcinoma ,Biomarkers, Tumor ,Humans ,lcsh:Science ,Gene ,Survival analysis ,Glucose Transporter Type 1 ,Multidisciplinary ,Symporters ,lcsh:R ,medicine.disease ,Prognosis ,Molecular biology ,Survival Analysis ,3. Good health ,Cancer research ,biology.protein ,Carcinoma, Squamous Cell ,GLUT1 ,Female ,lcsh:Q ,Research Article - Abstract
We performed a pilot proteogenomic study to compare lung adenocarcinoma to lung squamous cell carcinoma using quantitative proteomics (6-plex TMT) combined with a customized Affymetrix GeneChip. Using MaxQuant software, we identified 51,001 unique peptides that mapped to 7,241 unique proteins and from these identified 6,373 genes with matching protein expression for further analysis. We found a minor correlation between gene expression and protein expression; both datasets were able to independently recapitulate known differences between the adenocarcinoma and squamous cell carcinoma subtypes. We found 565 proteins and 629 genes to be differentially expressed between adenocarcinoma and squamous cell carcinoma, with 113 of these consistently differentially expressed at both the gene and protein levels. We then compared our results to published adenocarcinoma versus squamous cell carcinoma proteomic data that we also processed with MaxQuant. We selected two proteins consistently overexpressed in squamous cell carcinoma in all studies, MCT1 (SLC16A1) and GLUT1 (SLC2A1), for further investigation. We found differential expression of these same proteins at the gene level in our study as well as in other public gene expression datasets. These findings combined with survival analysis of public datasets suggest that MCT1 and GLUT1 may be potential prognostic markers in adenocarcinoma and druggable targets in squamous cell carcinoma. Data are available via ProteomeXchange with identifier PXD002622.
- Published
- 2015
12. TaCIPK29, a CBL-interacting protein kinase gene from wheat, confers salt stress tolerance in transgenic tobacco
- Author
-
Qingchen Luo, Yin Li, Guangyuan He, Shiyi Zhou, Lihong Chen, Shasha Li, Jialu Feng, Yunyi Liu, Shuya Wei, Fan Zhang, Xiaomin Deng, Wei Hu, Bin Fang, Guangxiao Yang, and Jiapeng Han
- Subjects
Paraquat ,Transgene ,lcsh:Medicine ,Plant Science ,Sodium Chloride ,Plant Genetics ,medicine.disease_cause ,chemistry.chemical_compound ,Gene Expression Regulation, Plant ,Tobacco ,medicine ,lcsh:Science ,Biology ,Abscisic acid ,Triticum ,Plant Proteins ,Nicotiana ,chemistry.chemical_classification ,Reactive oxygen species ,Multidisciplinary ,biology ,Abiotic stress ,lcsh:R ,Hydrogen Peroxide ,Ethylenes ,Catalase ,Plants, Genetically Modified ,biology.organism_classification ,chemistry ,Biochemistry ,biology.protein ,lcsh:Q ,Reactive Oxygen Species ,Oxidative stress ,Research Article ,Abscisic Acid - Abstract
Calcineurin B-like protein-interacting protein kinases (CIPKs) have been found to be responsive to abiotic stress. However, their precise functions and the related molecular mechanisms in abiotic stress tolerance are not completely understood, especially in wheat. In the present study, TaCIPK29 was identified as a new member of CIPK gene family in wheat. TaCIPK29 transcript increased after NaCl, cold, methyl viologen (MV), abscisic acid (ABA) and ethylene treatments. Over-expression of TaCIPK29 in tobacco resulted in increased salt tolerance, which was demonstrated by higher germination rates, longer root lengths and better growth status of transgenic tobacco plants compared to controls when both were treated with salt stress. Physiological measurements indicated that transgenic tobacco seedlings retained high K(+)/Na(+) ratios and Ca(2+) content by up-regulating some transporter genes expression and also possessed lower H2O2 levels and reduced membrane injury by increasing the expression and activities of catalase (CAT) and peroxidase (POD) under salt stress. Moreover, transgenic lines conferred tolerance to oxidative stress by increasing the activity and expression of CAT. Finally, TaCIPK29 was located throughout cells and it preferentially interacted with TaCBL2, TaCBL3, NtCBL2, NtCBL3 and NtCAT1. Taken together, our results showed that TaCIPK29 functions as a positive factor under salt stress and is involved in regulating cations and reactive oxygen species (ROS) homeostasis.
- Published
- 2013
13. Ack1 Mediated AKT/PKB Tyrosine 176 Phosphorylation Regulates Its Activation
- Author
-
Charlene Rivera, Kiran Mahajan, Alexis S. Lopez, John M. Koomen, Rebecca S. Muraoka-Cook, H. Shelton Earp, Domenico Coppola, Nupam P. Mahajan, Said M. Sebti, Sridevi Challa, Y. Ann Chen, Weiwei Zhu, Ernst Schönbrunn, Bin Fang, Robert W. Engelman, and Jin Q. Cheng
- Subjects
Male ,lcsh:Medicine ,AKT1 ,Breast Neoplasms ,Mice, Transgenic ,Biochemistry ,Receptor tyrosine kinase ,TNK2 ,03 medical and health sciences ,Mice ,0302 clinical medicine ,PTEN ,Animals ,Humans ,Phosphorylation ,lcsh:Science ,Protein kinase B ,Molecular Biology ,PI3K/AKT/mTOR pathway ,030304 developmental biology ,Oncology/Prostate Cancer ,Prostatic Intraepithelial Neoplasia ,0303 health sciences ,Multidisciplinary ,biology ,Akt/PKB signaling pathway ,lcsh:R ,Cell Membrane ,Protein-Tyrosine Kinases ,Pathology/Molecular Pathology ,3. Good health ,Protein Structure, Tertiary ,030220 oncology & carcinogenesis ,Oncology/Breast Cancer ,biology.protein ,Cancer research ,Disease Progression ,Tyrosine ,lcsh:Q ,Female ,Proto-Oncogene Proteins c-akt ,Platelet-derived growth factor receptor ,Research Article - Abstract
The AKT/PKB kinase is a key signaling component of one of the most frequently activated pathways in cancer and is a major target of cancer drug development. Most studies have focused on its activation by Receptor Tyrosine Kinase (RTK) mediated Phosphatidylinositol-3-OH kinase (PI3K) activation or loss of Phosphatase and Tensin homolog (PTEN). We have uncovered that growth factors binding to RTKs lead to activation of a non-receptor tyrosine kinase, Ack1 (also known as ACK or TNK2), which directly phosphorylates AKT at an evolutionarily conserved tyrosine 176 in the kinase domain. Tyr176-phosphorylated AKT localizes to the plasma membrane and promotes Thr308/Ser473-phosphorylation leading to AKT activation. Mice expressing activated Ack1 specifically in the prostate exhibit AKT Tyr176-phosphorylation and develop murine prostatic intraepithelial neoplasia (mPINs). Further, expression levels of Tyr176-phosphorylated-AKT and Tyr284-phosphorylated-Ack1 were positively correlated with the severity of disease progression, and inversely correlated with the survival of breast cancer patients. Thus, RTK/Ack1/AKT pathway provides a novel target for drug discovery.
- Published
- 2010
14. TGF-β Negatively Regulates CXCL1 Chemokine Expression in Mammary Fibroblasts through Enhancement of Smad2/3 and Suppression of HGF/c-Met Signaling Mechanisms
- Author
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Min Yao, Wei Bin Fang, Nikki Cheng, Mike Portsche, Benford Mafuvadze, and An Zou
- Subjects
Cell signaling ,C-Met ,Chemokine CXCL1 ,animal diseases ,lcsh:Medicine ,Smad2 Protein ,Biology ,Transforming Growth Factor beta1 ,Mice ,chemistry.chemical_compound ,Mammary Glands, Animal ,Tumor Cells, Cultured ,medicine ,Animals ,Humans ,Breast ,Smad3 Protein ,RNA, Small Interfering ,Promoter Regions, Genetic ,lcsh:Science ,Autocrine signalling ,Regulation of gene expression ,Multidisciplinary ,Hepatocyte Growth Factor ,Carcinoma, Ductal, Breast ,lcsh:R ,Fibroblasts ,Proto-Oncogene Proteins c-met ,respiratory system ,Mice, Inbred C57BL ,CXCL1 ,Gene Expression Regulation ,chemistry ,Mutagenesis, Site-Directed ,Cancer research ,Female ,lcsh:Q ,Hepatocyte growth factor ,Signal transduction ,Signal Transduction ,Research Article ,Transforming growth factor ,medicine.drug - Abstract
Fibroblasts are major cellular components of the breast cancer stroma, and influence the growth, survival and invasion of epithelial cells. Compared to normal tissue fibroblasts, carcinoma associated fibroblasts (CAFs) show increased expression of numerous soluble factors including growth factors and cytokines. However, the mechanisms regulating expression of these factors remain poorly understood. Recent studies have shown that breast CAFs overexpress the chemokine CXCL1, a key regulator of tumor invasion and chemo-resistance. Increased expression of CXCL1 in CAFs correlated with poor patient prognosis, and was associated with decreased expression of TGF-β signaling components. The goal of these studies was to understand the role of TGF-β in regulating CXCL1 expression in CAFs, using cell culture and biochemical approaches. We found that TGF-β treatment decreased CXCL1 expression in CAFs, through Smad2/3 dependent mechanisms. Chromatin immunoprecipitation and site-directed mutagenesis assays revealed two new binding sites in the CXCL1 promoter important for Smad2/3 modulation of CXCL1 expression. Smad2/3 proteins also negatively regulated expression of Hepatocyte Growth Factor (HGF), which was found to positively regulate CXCL1 expression in CAFs through c-Met receptor dependent mechanisms. HGF/c-Met signaling in CAFs was required for activity of NF-κB, a transcriptional activator of CXCL1 expression. These studies indicate that TGF-β negatively regulates CXCL1 expression in CAFs through Smad2/3 binding to the promoter, and through suppression of HGF/c-Met autocrine signaling. These studies reveal novel insight into how TGF-β and HGF, key tumor promoting factors modulate CXCL1 chemokine expression in CAFs.
- Published
- 2015
- Full Text
- View/download PDF
15. An Integrated Epigenetic and Genetic Analysis of DNA Methyltransferase Genes (DNMTs) in Tumor Resistant and Susceptible Chicken Lines
- Author
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Huanmin Zhang, Jiuzhou Song, Wensheng Zhang, Ying Yu, Fei Tian, and Hong-Bin Fang
- Subjects
DNA (Cytosine-5-)-Methyltransferase 1 ,Transcription, Genetic ,Genetics and Genomics/Animal Genetics ,lcsh:Medicine ,Genetics and Genomics/Complex Traits ,Biology ,medicine.disease_cause ,Models, Biological ,Polymerase Chain Reaction ,DNA methyltransferase ,DNA Methyltransferase 3A ,Epigenesis, Genetic ,Genetics and Genomics/Epigenetics ,medicine ,Animals ,Genetic Predisposition to Disease ,DNA (Cytosine-5-)-Methyltransferases ,Epigenetics ,Cancer epigenetics ,lcsh:Science ,Genetics and Genomics/Cancer Genetics ,RNA-Directed DNA Methylation ,Epigenomics ,Genetics and Genomics/Medical Genetics ,Genetics ,Binding Sites ,Multidisciplinary ,Genetics and Genomics/Functional Genomics ,lcsh:R ,Genetics and Genomics ,Methylation ,DNA Methylation ,Genetics and Genomics/Bioinformatics ,Molecular biology ,Genetics and Genomics/Chromosome Biology ,Genetics and Genomics/Genome Projects ,Genetic Techniques ,Genetics and Genomics/Disease Models ,Mutation ,embryonic structures ,DNA methylation ,lcsh:Q ,CpG Islands ,Genetics and Genomics/Genetics of the Immune System ,Genetics and Genomics/Comparative Genomics ,Carcinogenesis ,Chickens ,Research Article - Abstract
Both epigenetic alterations and genetic variations play essential roles in tumorigenesis. The epigenetic modification of DNA methylation is catalyzed and maintained by the DNA methyltransferases (DNMT3a, DNMT3b and DNMT1). DNA mutations and DNA methylation profiles of DNMTs themselves and their relationships with chicken neoplastic disease resistance and susceptibility are not yet defined. In the present study, we analyzed the complexity of the DNA methylation variations and DNA mutations in the first exon of three DNMTs genes over generations, tissues, and ages among chickens of two highly inbred White Leghorn lines, Marek's disease-resistant line 6(3) and -susceptible line 7(2), and six recombinant congenic strains (RCSs). Among them, tissue-specific methylation patterns of DNMT3a were disclosed in spleen, liver, and hypothalamus in lines 6(3) and 7(2). The methylation level of DNMT3b on four CpG sites was not significantly different among four tissues of the two lines. However, two line-specific DNA transition mutations, CpG-->TpG (Chr20:10203733 and 10203778), were discovered in line 7(2) compared to the line 6(3) and RCSs. The methylation contents of DNMT1 in blood cell showed significant epimutations in the first CpG site among the two inbred lines and the six RCSs (P
- Published
- 2008
- Full Text
- View/download PDF
16. Ack1 Mediated AKT/PKB Tyrosine 176 Phosphorylation Regulates Its Activation.
- Author
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Mahajan, Kiran, Coppola, Domenico, Challa, Sridevi, Bin Fang, Chen, Y. Ann, Weiwei Zhu, Lopez, Alexis S., Koomen, John, Engelman, Robert W., Rivera, Charlene, Muraoka-Cook, Rebecca S., Cheng, Jin Q., Schönbrunn, Ernst, Sebti, Said M., Earp, H. Shelton, and Mahajan, Nupam P.
- Subjects
TYROSINE ,PHOSPHORYLATION ,DRUG development ,PROTEIN-tyrosine kinases ,CELL membranes ,GROWTH factors ,BREAST cancer patients ,AMINO acids ,CHEMICAL reactions ,PHARMACOLOGY - Abstract
The AKT/PKB kinase is a key signaling component of one of the most frequently activated pathways in cancer and is a major target of cancer drug development. Most studies have focused on its activation by Receptor Tyrosine Kinase (RTK) mediated Phosphatidylinositol-3-OH kinase (PI3K) activation or loss of Phosphatase and Tensin homolog (PTEN). We have uncovered that growth factors binding to RTKs lead to activation of a non-receptor tyrosine kinase, Ack1 (also known as ACK or TNK2), which directly phosphorylates AKT at an evolutionarily conserved tyrosine 176 in the kinase domain. Tyr176-phosphorylated AKT localizes to the plasma membrane and promotes Thr308/Ser473-phosphorylation leading to AKT activation. Mice expressing activated Ack1 specifically in the prostate exhibit AKT Tyr176-phosphorylation and develop murine prostatic intraepithelial neoplasia (mPINs). Further, expression levels of Tyr176-phosphorylated-AKT and Tyr284-phosphorylated-Ack1 were positively correlated with the severity of disease progression, and inversely correlated with the survival of breast cancer patients. Thus, RTK/Ack1/AKT pathway provides a novel target for drug discovery. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
17. Reconstructive endovascular treatment of vertebral artery dissecting aneurysms with the Low-profile Visualized Intraluminal Support (LVIS) device.
- Author
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Chuan-Chuan Wang, Yi-Bin Fang, Ping Zhang, Xuan Zhu, Bo Hong, Yi Xu, Jian-Min Liu, and Qing-Hai Huang
- Subjects
Medicine ,Science - Abstract
The Low-profile Visualized Intraluminal Support (LVIS) device is a new generation of self-expanding braided stent recently introduced in China for stent assisted coiling of intracranial aneurysms. The aim of our study is to evaluate the feasibility, safety, and efficacy of the LVIS device in reconstructive treatment of vertebral artery dissecting aneurysms (VADAs).We retrospectively reviewed the neurointerventional database of our institution from June 2014 to May 2016. Patients who underwent endovascular treatment of VADAs with LVIS stents were included in this study. Clinical presentation, aneurysmal characteristics, technical feasibility, procedural complications, and angiographic and clinical follow-up results were evaluated.38 patients with VADAs who underwent treatment with LVIS stent were identified, including 3 ruptured VADAs. All VADAs were successfully treated with reconstructive techniques including the stent-assisted coiling (n = 34) and stenting only (n = 4). Post-procedural complications developed in 3 patients (7.9%) including two small brainstem infarctions and one delayed thromboembolic event. Complications resulted in one case of minor permanent morbidity (2.6%). There was no procedure-related mortality. The follow-up angiogram was available in 30 patients at an average of 8.3 months (range, 2 to 30 months), which revealed complete occlusion in 23 patients (76.7%), residual neck in five patients (16.7%), and residual sac in two patients (6.7%). The follow-up of 25 aneurysms with incomplete immediate occlusion revealed 22 aneurysms (88%) with improvement in the Raymond class. One aneurysm (3.3%) showed recanalization and required retreatment. Clinical followed-up at 5-28 months (mean 14.1 months) was achieved in 36 patients because two patients died of pancreatic cancer and basal ganglia hemorrhage, respectively. No new neurologic deterioration or aneurysm (re)bleeding was observed.Our preliminary experience with reconstruction of VADAs with the LVIS device demonstrates that this treatment approach is feasible with good short-term angiographic and clinical outcomes. Long-term and larger cohort studies are necessary to determine long-term outcomes of this therapy.
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- 2017
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18. Reconstructive Treatment of Ruptured Intracranial Spontaneous Vertebral Artery Dissection Aneurysms: Long-Term Results and Predictors of Unfavorable Outcomes.
- Author
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Kai-Jun Zhao, Yi-Bin Fang, Qing-Hai Huang, Yi Xu, Bo Hong, Qiang Li, Jian-Min Liu, Wen-Yuan Zhao, and Ben-Qiang Deng
- Subjects
Medicine ,Science - Abstract
INTRODUCTIONFew studies focused on predictors of unfavorable outcomes (modified Rankin Scale, 2-6) after reconstructive treatment of the ruptured intracranial spontaneous vertebral artery dissection aneurysms (ris-VADAs), which was evaluated based on 57 reconstructed lesions in this study.METHODSResults of 57 consecutive patients (M:F = 29∶28; median age, 48 years; range, 27 to 69 years) harboring 57 ris-VADAs, which were treated with coils combined with single stent(n = 32), double overlapping stents (n = 16), and triple overlapping stents (n = 9) between October 2000 to March 2011, were retrospectively reviewed and analyzed.RESULTSThe available (n = 54) mean durations of angiographic and clinical follow-ups were 27 months (range, 12 to 78) and 62 months (range, 12 to 132), respectively. The involvement of PICA (p = 0.004), size of lesions (p = 0.000), quantity of stent (p = 0.001), and coil type (p = 0.002) affected the immediate obliteration grade, which was only risk factor for angiographic recurrences (p = 0.031). Although the post-treatment outcomes did not differ between single stent and multiple stents (p = 0.434), 5 angiographic recurrences, 1 rebleeding and 1 suspected rebleeding, all occurred in partial obliteration after single-stent-assisted coiling. Progressive thrombosis and in-stent obliteration were not detected on follow-up angiograms. Older age (odds ratio [OR] = 1.090; 95% confidence interval [CI], 1.004-1.184; p = 0.040) and unfavorable Hunt-Hess scale (OR = 4.289; 95%CI, 1.232-14.933; p = 0.022) were independent predictors of unfavorable outcomes in the reconstructed ris-VADAs.CONCLUSIONSImmediate obliteration grade was only risk factor for angiographic recurrence after reconstructive treatment. Unfavorable Hunt-Hess grade and older age were independent predictors of unfavorable outcomes in ris-VADAs.
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- 2013
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