31 results on '"Bhargavi"'
Search Results
2. Supramolecular dynamic binary complexes with pH and salt-responsive properties for use in unconventional reservoirs.
- Author
-
Bhargavi Bhat, Shuhao Liu, Yu-Ting Lin, Martin L Sentmanat, Joseph Kwon, and Mustafa Akbulut
- Subjects
Medicine ,Science - Abstract
Hydraulic fracturing of unconventional reservoirs has seen a boom in the last century, as a means to fulfill the growing energy demand in the world. The fracturing fluid used in the process plays a substantial role in determining the results. Hence, several research and development efforts have been geared towards developing more sustainable, efficient, and improved fracturing fluids. Herein, we present a dynamic binary complex (DBC) solution, with potential to be useful in the hydraulic fracturing domain. It has a supramolecular structure formed by the self-assembly of low molecular weight viscosifiers (LMWVs) oleic acid and diethylenetriamine into an elongated entangled network under alkaline conditions. With less than 2 wt% constituents dispersed in aqueous solution, a viscous gel that exhibits high viscosities even under shear was formed. Key features include responsiveness to pH and salinity, and a zero-shear viscosity that could be tuned by a factor of ~280 by changing the pH. Furthermore, its viscous properties were more pronounced in the presence of salt. Sand settling tests revealed its potential to hold up sand particles for extended periods of time. In conclusion, this DBC solution system has potential to be utilized as a smart salt-responsive, pH-switchable hydraulic fracturing fluid.
- Published
- 2021
- Full Text
- View/download PDF
3. A pilot study: Auditory steady-state responses (ASSR) can be measured in human fetuses using fetal magnetoencephalography (fMEG).
- Author
-
Dorothea Niepel, Bhargavi Krishna, Eric R Siegel, Rossitza Draganova, Hubert Preissl, Rathinaswamy B Govindan, and Hari Eswaran
- Subjects
Medicine ,Science - Abstract
BackgroundAuditory steady-state responses (ASSRs) are ongoing evoked brain responses to continuous auditory stimuli that play a role for auditory processing of complex sounds and speech perception. Transient auditory event-related responses (AERRs) have previously been recorded using fetal magnetoencephalography (fMEG) but involve different neurological pathways. Previous studies in children and adults demonstrated that the cortical components of the ASSR are significantly affected by state of consciousness and by maturational changes in neonates and young infants. To our knowledge, this is the first study to investigate ASSRs in human fetuses.Methods47 fMEG sessions were conducted with 24 healthy pregnant women in three gestational age groups (30-32 weeks, 33-35 weeks and 36-39 weeks). The stimulation consisted of amplitude-modulated (AM) tones with a duration of one second, a carrier frequency (CF) of 500 Hz and a modulation frequency (MF) of 27 Hz or 42 Hz. Both tones were presented in a random order with equal probability adding up to 80-100 repetitions per tone. The ASSR across trials was quantified by assessing phase synchrony in the cortical signals at the stimulation frequency.Results and conclusionTen out of 47 recordings were excluded due to technical problems or maternal movements. Analysis of the included 37 fetal recordings revealed a statistically significant response for the phase coherence between trials for the MF of 27 Hz but not for 42 Hz. An exploratory subgroup analysis moreover suggested an advantage in detectability for fetal behavioral state 2F (active asleep) compared to 1F (quiet asleep) detected using fetal heart rate. In conclusion, this pilot study is the first description of a method to detect human ASSRs in fetuses. The findings warrant further investigations of the developing fetal brain.
- Published
- 2020
- Full Text
- View/download PDF
4. Integrated approaches to identifying cryptic bat species in areas of high endemism: The case of Rhinolophus andamanensis in the Andaman Islands.
- Author
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Chelmala Srinivasulu, Aditya Srinivasulu, Bhargavi Srinivasulu, and Gareth Jones
- Subjects
Medicine ,Science - Abstract
The diversity of bats worldwide includes large numbers of cryptic species, partly because divergence in acoustic traits such as echolocation calls are under stronger selection than differences in visual appearance in these nocturnal mammals. Island faunas often contain disproportionate numbers of endemic species, and hence we might expect cryptic, endemic species to be discovered relatively frequently in bats inhabiting islands. Species are best defined when multiple lines of evidence supports their diagnosis. Here we use morphometric, acoustic, and molecular phylogenetic data to show that a horseshoe bat in the Andaman Islands is distinct in all three aspects, supporting its status as a distinct species. We recommend investigation into possible new and endemic bat species on islands by using integrated approaches that provide independent lines of evidence for taxonomic distinctiveness. We provide a formal redescription of the taxon newly raised to species level, Rhinolophus andamanensis Dobson, 1872.
- Published
- 2019
- Full Text
- View/download PDF
5. Gut Microbiota Conversion of Dietary Ellagic Acid into Bioactive Phytoceutical Urolithin A Inhibits Heme Peroxidases.
- Author
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Piu Saha, Beng San Yeoh, Rajbir Singh, Bhargavi Chandrasekar, Praveen Kumar Vemula, Bodduluri Haribabu, Matam Vijay-Kumar, and Venkatakrishna R Jala
- Subjects
Medicine ,Science - Abstract
Numerous studies signify that diets rich in phytochemicals offer many beneficial functions specifically during pathologic conditions, yet their effects are often not uniform due to inter-individual variation. The host indigenous gut microbiota and their modifications of dietary phytochemicals have emerged as factors that greatly influence the efficacy of phytoceutical-based intervention. Here, we investigated the biological activities of one such active microbial metabolite, Urolithin A (UA or 3,8-dihydroxybenzo[c]chromen-6-one), which is derived from the ellagic acid (EA). Our study demonstrates that UA potently inhibits heme peroxidases i.e. myeloperoxidase (MPO) and lactoperoxidase (LPO) when compared to the parent compound EA. In addition, chrome azurol S (CAS) assay suggests that EA, but not UA, is capable of binding to Fe3+, due to its catechol-like structure, although its modest heme peroxidase inhibitory activity is abrogated upon Fe3+-binding. Interestingly, UA-mediated MPO and LPO inhibition can be prevented by innate immune protein human NGAL or its murine ortholog lipocalin 2 (Lcn2), implying the complex nature of host innate immunity-microbiota interactions. Spectral analysis indicates that UA inhibits heme peroxidase-catalyzed reaction by reverting the peroxidase back to its inactive native state. In support of these in vitro results, UA significantly reduced phorbol myristate acetate (PMA)-induced superoxide generation in neutrophils, however, EA failed to block the superoxide generation. Treatment with UA significantly reduced PMA-induced mouse ear edema and MPO activity compared to EA treated mice. Collectively, our results demonstrate that microbiota-mediated conversion of EA to UA is advantageous to both host and microbiota i.e. UA-mediated inhibition of pro-oxidant enzymes reduce tissue inflammation, mitigate non-specific killing of gut bacteria, and abrogate iron-binding property of EA, thus providing a competitive edge to the microbiota in acquiring limiting nutrient iron and thrive in the gut.
- Published
- 2016
- Full Text
- View/download PDF
6. A Novel Transgenic Mouse Line for Tracing MicroRNA-155-5p Activity In Vivo.
- Author
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Krung Phiwpan, Jie Guo, Wei Zhang, Tanyu Hu, Bhargavi M Boruah, Jianhua Zhang, and Xuyu Zhou
- Subjects
Medicine ,Science - Abstract
MicroRNA-155 (miR-155) plays significant role in various physiological processes involving both innate and adaptive immunity. miR-155 expression level changes dynamically during various immune responses. However, current approaches for miR-155 detection at the RNA level do not precisely reflect the real-time activity. Herein, we generated a transgenic mouse line (R26-DTR-155T) for determination of miR-155-5p activity in vivo by inserting miR-155-5p target sequence downstream of a reporter transgene comprising Diphtheria Toxin Receptor and TagBlue fluorescence protein. Using this approach, R26-DTR-155T mice were able to measure variation in levels of miR-155-5p activity in specific cell types of interest. The DTR expression levels were inversely correlated with the endogenous miR-155 expression pattern as detected by quantitative RT-PCR. Our data demonstrate a novel transgenic mouse line which could be useful for tracing miR-155-5p activity in specific cell types through measurement of miR-155-5p activity at single cell level.
- Published
- 2015
- Full Text
- View/download PDF
7. Preexisting CD4+ T-cell immunity in human population to avian influenza H7N9 virus: whole proteome-wide immunoinformatics analyses.
- Author
-
Venkata R Duvvuri, Bhargavi Duvvuri, Christilda Alice, Gillian E Wu, Jonathan B Gubbay, and Jianhong Wu
- Subjects
Medicine ,Science - Abstract
In 2013, a novel avian influenza H7N9 virus was identified in human in China. The antigenically distinct H7N9 surface glycoproteins raised concerns about lack of cross-protective neutralizing antibodies. Epitope-specific preexisting T-cell immunity was one of the protective mechanisms in pandemic 2009 H1N1 even in the absence of cross-protective antibodies. Hence, the assessment of preexisting CD4+ T-cell immunity to conserved epitopes shared between H7N9 and human influenza A viruses (IAV) is critical. A comparative whole proteome-wide immunoinformatics analysis was performed to predict the CD4+ T-cell epitopes that are commonly conserved within the proteome of H7N9 in reference to IAV subtypes (H1N1, H2N2, and H3N2). The CD4+ T-cell epitopes that are commonly conserved (∼ 556) were further screened against the Immune Epitope Database (IEDB) to validate their immunogenic potential. This analysis revealed that 45.5% (253 of 556) epitopes are experimentally proven to induce CD4+ T-cell memory responses. In addition, we also found that 23.3% of CD4+ T-cell epitopes have ≥ 90% of sequence homology with experimentally defined CD8+ T-cell epitopes. We also conducted the population coverage analysis across different ethnicities using commonly conserved CD4+ T-cell epitopes and corresponding HLA-DRB1 alleles. Interestingly, the indigenous populations from Canada, United States, Mexico and Australia exhibited low coverage (28.65% to 45.62%) when compared with other ethnicities (57.77% to 94.84%). In summary, the present analysis demonstrate an evidence on the likely presence of preexisting T-cell immunity in human population and also shed light to understand the potential risk of H7N9 virus among indigenous populations, given their high susceptibility during previous pandemic influenza events. This information is crucial for public health policy, in targeting priority groups for immunization programs.
- Published
- 2014
- Full Text
- View/download PDF
8. Retargeting T cells for HER2-positive tumor killing by a bispecific Fv-Fc antibody.
- Author
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Lei Wang, Yanran He, Ge Zhang, Juan Ma, Changzhen Liu, Wen He, Wei Wang, Huamin Han, Bhargavi M Boruah, and Bin Gao
- Subjects
Medicine ,Science - Abstract
To exploit the biological and pharmacological properties of immunoglobulin constant domain Fc fragment and increase the killing efficacy of T cells, a single chain variable fragment specific to CD3 was fused with Fcab (Fc antigen binding), a mutant Fc fragment with specificity against Human epidermal growth factor receptor 2 (HER2) developed by F-star. The bispecific fusion named as FcabCD3 was expressed by transient transfection in HEK-293T cells and purified by affinity chromatography. Specific cytolytic activity of retargeted T cells to kill HER2 positive SKBR3 cell line was evaluated in vitro. FcabCD3 was able to retarget T cells to kill both Herceptin insensitive Colo205-luc cell line and HER2 low expression MDA-MB-231-luc cell line. Furthermore, FcabCD3 was effective in eliminating the Colo205 tumor established on BALB/c nu/nu mice.
- Published
- 2013
- Full Text
- View/download PDF
9. Single domain antibody multimers confer protection against rabies infection.
- Author
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Bhargavi M Boruah, Dawei Liu, Duan Ye, Tie-Jun Gu, Chun-Lai Jiang, Mingsheng Qu, Edward Wright, Wei Wang, Wen He, Changzhen Liu, and Bin Gao
- Subjects
Medicine ,Science - Abstract
Post-exposure prophylactic (PEP) neutralizing antibodies against Rabies are the most effective way to prevent infection-related fatality. The outer envelope glycoprotein of the Rabies virus (RABV) is the most significant surface antigen for generating virus-neutralizing antibodies. The small size and uncompromised functional specificity of single domain antibodies (sdAbs) can be exploited in the fields of experimental therapeutic applications for infectious diseases through formatting flexibilities to increase their avidity towards target antigens. In this study, we used phage display technique to select and identify sdAbs that were specific for the RABV glycoprotein from a naïve llama-derived antibody library. To increase their neutralizing potencies, the sdAbs were fused with a coiled-coil peptide derived from the human cartilage oligomeric matrix protein (COMP48) to form homogenous pentavalent multimers, known as combodies. Compared to monovalent sdAbs, the combodies, namely 26424 and 26434, exhibited high avidity and were able to neutralize 85-fold higher input of RABV (CVS-11 strain) pseudotypes in vitro, as a result of multimerization, while retaining their specificities for target antigen. 26424 and 26434 were capable of neutralizing CVS-11 pseudotypes in vitro by 90-95% as compared to human rabies immunoglobulin (HRIG), currently used for PEP in Rabies. The multimeric sdAbs were also demonstrated to be partially protective for mice that were infected with lethal doses of rabies virus in vivo. The results demonstrate that the combodies could be valuable tools in understanding viral mechanisms, diagnosis and possible anti-viral candidate for RABV infection.
- Published
- 2013
- Full Text
- View/download PDF
10. The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency.
- Author
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Colin R Lickwar, Bhargavi Rao, Andrey A Shabalin, Andrew B Nobel, Brian D Strahl, and Jason D Lieb
- Subjects
Medicine ,Science - Abstract
In cells lacking the histone methyltransferase Set2, initiation of RNA polymerase II transcription occurs inappropriately within the protein-coding regions of genes, rather than being restricted to the proximal promoter. It was previously reported that this "cryptic" transcription occurs preferentially in long genes, and in genes that are infrequently transcribed. Here, we mapped the transcripts produced in an S. cerevisiae strain lacking Set2, and applied rigorous statistical methods to identify sites of cryptic transcription at high resolution. We find that suppression of cryptic transcription occurs independent of gene length or transcriptional frequency. Our conclusions differ with those reported previously because we obtained a higher-resolution dataset, we accounted for the fact that gene length and transcriptional frequency are not independent variables, and we accounted for several ascertainment biases that make cryptic transcription easier to detect in long, infrequently transcribed genes. These new results and conclusions have implications for many commonly used genomic analysis approaches, and for the evolution of high-fidelity RNA polymerase II transcriptional initiation in eukaryotes.
- Published
- 2009
- Full Text
- View/download PDF
11. The tubulin database: Linking mutations, modifications, ligands and local interactions
- Author
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Abbaali, Izra, primary, Truong, Danny, additional, Day, Shania Deon, additional, Mushayeed, Faliha, additional, Ganesh, Bhargavi, additional, Haro-Ramirez, Nancy, additional, Isles, Juliet, additional, Nag, Hindol, additional, Pham, Catherine, additional, Shah, Priya, additional, Tomar, Ishaan, additional, Manel-Romero, Carolina, additional, and Morrissette, Naomi S., additional
- Published
- 2023
- Full Text
- View/download PDF
12. Supramolecular dynamic binary complexes with pH and salt-responsive properties for use in unconventional reservoirs
- Author
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Bhat, Bhargavi, primary, Liu, Shuhao, additional, Lin, Yu-Ting, additional, Sentmanat, Martin L., additional, Kwon, Joseph, additional, and Akbulut, Mustafa, additional
- Published
- 2021
- Full Text
- View/download PDF
13. Supramolecular dynamic binary complexes with pH and salt-responsive properties for use in unconventional reservoirs
- Author
-
Yu-Ting Lin, Shuhao Liu, Martin L. Sentmanat, Mustafa Akbulut, Bhargavi Bhat, and Joseph Sang-Il Kwon
- Subjects
Salinity ,Marine and Aquatic Sciences ,Sodium Chloride ,Physical Chemistry ,Biochemistry ,Extraction and Processing Industry ,Viscosity ,chemistry.chemical_compound ,Hydraulic fracturing ,Materials Physics ,Polyamines ,Medicine and Health Sciences ,Oil and Gas Fields ,Fluids ,Multidisciplinary ,Aqueous solution ,Hydraulic Fracking ,Physics ,Fatty Acids ,dBc ,Viscoelasticity ,Hydrogen-Ion Concentration ,Lipids ,Shear (sheet metal) ,Chemistry ,Diethylenetriamine ,Physical Sciences ,Medicine ,Rheology ,Research Article ,States of Matter ,Materials science ,Science ,Materials Science ,Material Properties ,Supramolecular chemistry ,Natural Gas ,Settling ,Sea Water ,Nutrition ,Ecology and Environmental Sciences ,Chemical Compounds ,Biology and Life Sciences ,Aquatic Environments ,Marine Environments ,Diet ,chemistry ,Chemical engineering ,Chemical Properties ,Earth Sciences ,Salts ,Oleic Acid - Abstract
Hydraulic fracturing of unconventional reservoirs has seen a boom in the last century, as a means to fulfill the growing energy demand in the world. The fracturing fluid used in the process plays a substantial role in determining the results. Hence, several research and development efforts have been geared towards developing more sustainable, efficient, and improved fracturing fluids. Herein, we present a dynamic binary complex (DBC) solution, with potential to be useful in the hydraulic fracturing domain. It has a supramolecular structure formed by the self-assembly of low molecular weight viscosifiers (LMWVs) oleic acid and diethylenetriamine into an elongated entangled network under alkaline conditions. With less than 2 wt% constituents dispersed in aqueous solution, a viscous gel that exhibits high viscosities even under shear was formed. Key features include responsiveness to pH and salinity, and a zero-shear viscosity that could be tuned by a factor of ~280 by changing the pH. Furthermore, its viscous properties were more pronounced in the presence of salt. Sand settling tests revealed its potential to hold up sand particles for extended periods of time. In conclusion, this DBC solution system has potential to be utilized as a smart salt-responsive, pH-switchable hydraulic fracturing fluid.
- Published
- 2021
14. A pilot study: Auditory steady-state responses (ASSR) can be measured in human fetuses using fetal magnetoencephalography (fMEG)
- Author
-
Rossitza Draganova, Hari Eswaran, Rathinaswamy B. Govindan, Dorothea Niepel, Hubert Preissl, Eric R. Siegel, and Bhargavi Krishna
- Subjects
Male ,Embryology ,Physiology ,Sensory Physiology ,Medizin ,Stimulation ,Audiology ,Pregnancy ,Medicine and Health Sciences ,Medicine ,Brain Mapping ,Gestational age ,Magnetoencephalography ,Brain ,Electroencephalography ,Sensory Systems ,Auditory System ,QUIET ,Child, Preschool ,Auditory Perception ,Evoked Potentials, Auditory ,Female ,Anatomy ,Brainstem ,Fetal magnetoencephalography ,Research Article ,medicine.medical_specialty ,Steady state (electronics) ,Speech perception ,Imaging Techniques ,Science ,Neuroimaging ,Research and Analysis Methods ,Fetus ,Humans ,Auditory Cortex ,Fetuses ,business.industry ,Infant, Newborn ,Biology and Life Sciences ,Neonates ,Infant ,Age Groups ,Human fetal ,People and Places ,Cognitive Science ,Population Groupings ,business ,Physiological Processes ,Sleep ,Developmental Biology ,Neuroscience - Abstract
BackgroundAuditory steady-state responses (ASSRs) are ongoing evoked brain responses to continuous auditory stimuli that play a role for auditory processing of complex sounds and speech perception. Transient auditory event-related responses (AERRs) have previously been recorded using fetal magnetoencephalography (fMEG) but involve different neurological pathways. Previous studies in children and adults demonstrated that the cortical components of the ASSR are significantly affected by state of consciousness and by maturational changes in neonates and young infants. To our knowledge, this is the first study to investigate ASSRs in human fetuses.Methods47 fMEG sessions were conducted with 24 healthy pregnant women in three gestational age groups (30–32 weeks, 33–35 weeks and 36–39 weeks). The stimulation consisted of amplitude-modulated (AM) tones with a duration of one second, a carrier frequency (CF) of 500 Hz and a modulation frequency (MF) of 27 Hz or 42 Hz. Both tones were presented in a random order with equal probability adding up to 80–100 repetitions per tone. The ASSR across trials was quantified by assessing phase synchrony in the cortical signals at the stimulation frequency.Results and ConclusionTen out of 47 recordings were excluded due to technical problems or maternal movements. Analysis of the included 37 fetal recordings revealed a statistically significant response for the phase coherence between trials for the MF of 27 Hz but not for 42 Hz. An exploratory subgroup analysis moreover suggested an advantage in detectability for fetal behavioral state 2F (active asleep) compared to 1F (quiet asleep) detected using fetal heart rate. In conclusion, with the present study it was possible to detect human fetal ASSRs for the first time. These findings warrant further investigations of the developing fetal brain.
- Published
- 2020
15. A pilot study: Auditory steady-state responses (ASSR) can be measured in human fetuses using fetal magnetoencephalography (fMEG)
- Author
-
Niepel, Dorothea, primary, Krishna, Bhargavi, additional, Siegel, Eric R., additional, Draganova, Rossitza, additional, Preissl, Hubert, additional, Govindan, Rathinaswamy B., additional, and Eswaran, Hari, additional
- Published
- 2020
- Full Text
- View/download PDF
16. Quantifying the incidence of severe-febrile-illness hospital admissions in sub-Saharan Africa
- Author
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Sabine Dittrich, Tomas O. Jensen, Oscar Bernal, Daniel A. Pfeffer, Katherine A. Twohig, Teri Roberts, Ursula Dalrymple, Paul Roddy, V. Bhargavi Rao, and Ethan Guillen
- Subjects
Male ,Plasmodium ,Prevalence ,Fevers ,Medical Overuse ,Pathology and Laboratory Medicine ,Severity of Illness Index ,Geographical locations ,0302 clinical medicine ,Patient Admission ,Medicine and Health Sciences ,030212 general & internal medicine ,Child ,Protozoans ,Aged, 80 and over ,Multidisciplinary ,Incidence (epidemiology) ,Incidence ,Malarial Parasites ,Febrile illness ,Eukaryota ,Middle Aged ,Hospitals ,Community-Acquired Infections ,Hospitalization ,Child, Preschool ,Medicine ,Female ,Research Article ,Zimbabwe ,Adult ,medicine.medical_specialty ,Sub saharan ,Adolescent ,Fever ,Science ,030231 tropical medicine ,03 medical and health sciences ,Young Adult ,Signs and Symptoms ,stomatognathic system ,Diagnostic Medicine ,Environmental health ,Parasite Groups ,Burkina Faso ,medicine ,Parasitic Diseases ,Humans ,Africa South of the Sahara ,Aged ,Estimation ,business.industry ,Public health ,Organisms ,Infant, Newborn ,Biology and Life Sciences ,Infant ,medicine.disease ,Tropical Diseases ,Parasitic Protozoans ,Malaria ,Health Care ,stomatognathic diseases ,Health Care Facilities ,Africa ,Etiology ,Parasitology ,People and places ,business ,Apicomplexa - Abstract
Severe-febrile-illness (SFI) is a common cause of morbidity and mortality across sub-Saharan Africa (SSA). The burden of SFI in SSA is currently unknown and its estimation is fraught with challenges. This is due to a lack of diagnostic capacity for SFI in SSA, and thus a dearth of baseline data on the underlying etiology of SFI cases and scant SFI-specific causative-agent prevalence data. To highlight the public health significance of SFI in SSA, we developed a Bayesian model to quantify the incidence of SFI hospital admissions in SSA. Our estimates indicate a mean population-weighted SFI-inpatient-admission incidence rate of 18.4 (6.8-31.1, 68% CrI) per 1000 people for the year 2014, across all ages within areas of SSA with stable Plasmodium falciparum transmission. We further estimated a total of 16,200,337 (5,993,249-27,321,779, 68% CrI) SFI hospital admissions. This analysis reveals the significant burden of SFI in hospitals in SSA, but also highlights the paucity of pathogen-specific prevalence and incidence data for SFI in SSA. Future improvements in pathogen-specific diagnostics for causative agents of SFI will increase the abundance of SFI-specific prevalence and incidence data, aid future estimations of SFI burden, and enable clinicians to identify SFI-specific pathogens, administer appropriate treatment and management, and facilitate appropriate antibiotic use.
- Published
- 2019
17. Integrated approaches to identifying cryptic bat species in areas of high endemism: The case of Rhinolophus andamanensis in the Andaman Islands
- Author
-
Srinivasulu, Chelmala, primary, Srinivasulu, Aditya, additional, Srinivasulu, Bhargavi, additional, and Jones, Gareth, additional
- Published
- 2019
- Full Text
- View/download PDF
18. Quantifying the incidence of severe-febrile-illness hospital admissions in sub-Saharan Africa
- Author
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Roddy, Paul, primary, Dalrymple, Ursula, additional, Jensen, Tomas O., additional, Dittrich, Sabine, additional, Rao, V. Bhargavi, additional, Pfeffer, Daniel A., additional, Twohig, Katherine A., additional, Roberts, Teri, additional, Bernal, Oscar, additional, and Guillen, Ethan, additional
- Published
- 2019
- Full Text
- View/download PDF
19. A Novel Transgenic Mouse Line for Tracing MicroRNA-155-5p Activity In Vivo
- Author
-
Jianhua Zhang, Jie Guo, Xuyu Zhou, Tanyu Hu, Wei Zhang, Krung Phiwpan, and Bhargavi M. Boruah
- Subjects
Genetically modified mouse ,Chromosomes, Artificial, Bacterial ,Transgene ,lcsh:Medicine ,Mice, Transgenic ,Biology ,Mice ,In vivo ,Genes, Reporter ,microRNA ,Animals ,Cell Lineage ,Diphtheria Toxin ,lcsh:Science ,3' Untranslated Regions ,Diphtheria toxin ,Reporter gene ,Multidisciplinary ,lcsh:R ,Gene targeting ,Acquired immune system ,Molecular biology ,Luminescent Proteins ,MicroRNAs ,lcsh:Q ,Genetic Engineering ,Research Article - Abstract
MicroRNA-155 (miR-155) plays significant role in various physiological processes involving both innate and adaptive immunity. miR-155 expression level changes dynamically during various immune responses. However, current approaches for miR-155 detection at the RNA level do not precisely reflect the real-time activity. Herein, we generated a transgenic mouse line (R26-DTR-155T) for determination of miR-155-5p activity in vivo by inserting miR-155-5p target sequence downstream of a reporter transgene comprising Diphtheria Toxin Receptor and TagBlue fluorescence protein. Using this approach, R26-DTR-155T mice were able to measure variation in levels of miR-155-5p activity in specific cell types of interest. The DTR expression levels were inversely correlated with the endogenous miR-155 expression pattern as detected by quantitative RT-PCR. Our data demonstrate a novel transgenic mouse line which could be useful for tracing miR-155-5p activity in specific cell types through measurement of miR-155-5p activity at single cell level.
- Published
- 2015
20. Gut Microbiota Conversion of Dietary Ellagic Acid into Bioactive Phytoceutical Urolithin A Inhibits Heme Peroxidases
- Author
-
Saha, Piu, primary, Yeoh, Beng San, additional, Singh, Rajbir, additional, Chandrasekar, Bhargavi, additional, Vemula, Praveen Kumar, additional, Haribabu, Bodduluri, additional, Vijay-Kumar, Matam, additional, and Jala, Venkatakrishna R., additional
- Published
- 2016
- Full Text
- View/download PDF
21. Preexisting CD4+ T-cell immunity in human population to avian influenza H7N9 virus: whole proteome-wide immunoinformatics analyses
- Author
-
Jianhong Wu, Gillian E. Wu, Christilda Alice, Bhargavi Duvvuri, Jonathan B. Gubbay, and Venkata R. Duvvuri
- Subjects
CD4-Positive T-Lymphocytes ,Viral Diseases ,Anatomy and Physiology ,Proteome ,Epitopes, T-Lymphocyte ,lcsh:Medicine ,CD8-Positive T-Lymphocytes ,Influenza A Virus, H7N9 Subtype ,medicine.disease_cause ,Epitope ,Conserved sequence ,0302 clinical medicine ,Immune Physiology ,Zoonoses ,Ethnicity ,Influenza A virus ,030212 general & internal medicine ,lcsh:Science ,Immune Response ,Conserved Sequence ,Avian influenza A viruses ,Genetics ,0303 health sciences ,education.field_of_study ,Multidisciplinary ,T Cells ,3. Good health ,Medicine ,Infectious diseases ,Antibody ,Research Article ,China ,Immune Cells ,Immunology ,Population ,Biology ,Antibodies ,Virus ,Birds ,03 medical and health sciences ,Immunity ,medicine ,Animals ,Humans ,education ,Alleles ,030304 developmental biology ,Sequence Homology, Amino Acid ,lcsh:R ,Computational Biology ,Membrane Proteins ,Virology ,Influenza ,Influenza A virus subtype H5N1 ,Influenza in Birds ,biology.protein ,Clinical Immunology ,lcsh:Q - Abstract
In 2013, a novel avian influenza H7N9 virus was identified in human in China. The antigenically distinct H7N9 surface glycoproteins raised concerns about lack of cross-protective neutralizing antibodies. Epitope-specific preexisting T-cell immunity was one of the protective mechanisms in pandemic 2009 H1N1 even in the absence of cross-protective antibodies. Hence, the assessment of preexisting CD4+ T-cell immunity to conserved epitopes shared between H7N9 and human influenza A viruses (IAV) is critical. A comparative whole proteome-wide immunoinformatics analysis was performed to predict the CD4+ T-cell epitopes that are commonly conserved within the proteome of H7N9 in reference to IAV subtypes (H1N1, H2N2, and H3N2). The CD4+ T-cell epitopes that are commonly conserved (∼ 556) were further screened against the Immune Epitope Database (IEDB) to validate their immunogenic potential. This analysis revealed that 45.5% (253 of 556) epitopes are experimentally proven to induce CD4+ T-cell memory responses. In addition, we also found that 23.3% of CD4+ T-cell epitopes have ≥ 90% of sequence homology with experimentally defined CD8+ T-cell epitopes. We also conducted the population coverage analysis across different ethnicities using commonly conserved CD4+ T-cell epitopes and corresponding HLA-DRB1 alleles. Interestingly, the indigenous populations from Canada, United States, Mexico and Australia exhibited low coverage (28.65% to 45.62%) when compared with other ethnicities (57.77% to 94.84%). In summary, the present analysis demonstrate an evidence on the likely presence of preexisting T-cell immunity in human population and also shed light to understand the potential risk of H7N9 virus among indigenous populations, given their high susceptibility during previous pandemic influenza events. This information is crucial for public health policy, in targeting priority groups for immunization programs.
- Published
- 2014
22. Retargeting T Cells for HER2-Positive Tumor Killing by a Bispecific Fv-Fc Antibody
- Author
-
Bhargavi M. Boruah, Juan Ma, Bin Gao, Wei Wang, Huamin Han, Lei Wang, Changzhen Liu, Yanran He, Ge Zhang, and Wen He
- Subjects
CD3 Complex ,Receptor, ErbB-2 ,medicine.medical_treatment ,CD3 ,Recombinant Fusion Proteins ,T-Lymphocytes ,Melanoma, Experimental ,lcsh:Medicine ,Biology ,Cell Line ,Mice ,Cancer immunotherapy ,Cell Line, Tumor ,Antibodies, Bispecific ,medicine ,Single-chain variable fragment ,Animals ,Humans ,lcsh:Science ,skin and connective tissue diseases ,Mice, Inbred BALB C ,Multidisciplinary ,lcsh:R ,HEK 293 cells ,T-cell receptor ,Molecular biology ,Immunoglobulin Fc Fragments ,HEK293 Cells ,Cell culture ,biology.protein ,lcsh:Q ,Antibody ,K562 Cells ,K562 cells ,Research Article - Abstract
To exploit the biological and pharmacological properties of immunoglobulin constant domain Fc fragment and increase the killing efficacy of T cells, a single chain variable fragment specific to CD3 was fused with Fcab (Fc antigen binding), a mutant Fc fragment with specificity against Human epidermal growth factor receptor 2 (HER2) developed by F-star. The bispecific fusion named as FcabCD3 was expressed by transient transfection in HEK-293T cells and purified by affinity chromatography. Specific cytolytic activity of retargeted T cells to kill HER2 positive SKBR3 cell line was evaluated in vitro. FcabCD3 was able to retarget T cells to kill both Herceptin insensitive Colo205-luc cell line and HER2 low expression MDA-MB-231-luc cell line. Furthermore, FcabCD3 was effective in eliminating the Colo205 tumor established on BALB/c nu/nu mice.
- Published
- 2013
23. The potential impact of improving appropriate treatment for fever on malaria and non-malarial febrile illness management in under-5s: a decision-tree modelling approach
- Author
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Azra C. Ghani, V. Bhargavi Rao, and David Schellenberg
- Subjects
Non-Clinical Medicine ,Epidemiology ,Psychological intervention ,lcsh:Medicine ,Global Health ,0302 clinical medicine ,030212 general & internal medicine ,Artemisinin ,lcsh:Science ,Health Systems Strengthening ,Diagnosis & treatment ,Potential impact ,Multidisciplinary ,biology ,Febrile illness ,3. Good health ,Plasmodium Falciparum ,Infectious Diseases ,Medicine ,Health Services Research ,Public Health ,medicine.drug ,Research Article ,medicine.medical_specialty ,Fever ,Clinical Research Design ,030231 tropical medicine ,Infectious Disease Epidemiology ,Decision Support Techniques ,03 medical and health sciences ,Antimalarials ,Malaria transmission ,parasitic diseases ,medicine ,Parasitic Diseases ,Humans ,Health Care Quality ,Intensive care medicine ,Health Care Policy ,business.industry ,lcsh:R ,Decision Trees ,Modeling ,Tropical Diseases (Non-Neglected) ,biology.organism_classification ,medicine.disease ,Surgery ,Malaria ,Tanzania ,Who guidelines ,lcsh:Q ,business ,Infectious Disease Modeling - Abstract
Background As international funding for malaria programmes plateaus, limited resources must be rationally managed for malaria and non-malarial febrile illnesses (NMFI). Given widespread unnecessary treatment of NMFI with first-line antimalarial Artemisinin Combination Therapies (ACTs), our aim was to estimate the effect of health-systems factors on rates of appropriate treatment for fever and on use of ACTs. Methods A decision-tree tool was developed to investigate the impact of improving aspects of the fever care-pathway and also evaluate the impact in Tanzania of the revised WHO malaria guidelines advocating diagnostic-led management Results Model outputs using baseline parameters suggest 49% malaria cases attending a clinic would receive ACTs (95% Uncertainty Interval:40.6–59.2%) but that 44% (95% UI:35–54.8%) NMFI cases would also receive ACTs. Provision of 100% ACT stock predicted a 28.9% increase in malaria cases treated with ACT, but also an increase in overtreatment of NMFI, with 70% NMFI cases (95% UI:56.4–79.2%) projected to receive ACTs, and thus an overall 13% reduction (95% UI:5–21.6%) in correct management of febrile cases. Modelling increased availability or use of diagnostics had little effect on malaria management outputs, but may significantly reduce NMFI overtreatment. The model predicts the early rollout of revised WHO guidelines in Tanzania may have led to a 35% decrease (95% UI:31.2–39.8%) in NMFI overtreatment, but also a 19.5% reduction (95% UI:11–27.2%), in malaria cases receiving ACTs, due to a potential fourfold decrease in cases that were untested or tested false-negative (42.5% vs.8.9%) and so untreated. Discussion Modelling multi-pronged intervention strategies proved most effective to improve malaria treatment without increasing NMFI overtreatment. As malaria transmission declines, health system interventions must be guided by whether the management priority is an increase in malaria cases receiving ACTs (reducing the treatment gap), reducing ACT waste through unnecessary treatment of NMFI or expanding appropriate treatment of all febrile illness.
- Published
- 2013
24. Single domain antibody multimers confer protection against rabies infection
- Author
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Duan Ye, Wen He, Dawei Liu, Chun-lai Jiang, Wei Wang, Bin Gao, Bhargavi M. Boruah, Changzhen Liu, Edward Wright, Mingsheng Qu, Tie-jun Gu, and Kobinger, Gary P
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Viral Diseases ,Anatomy and Physiology ,Phage display ,Mouse ,lcsh:Medicine ,Cartilage Oligomeric Matrix Protein ,Antibodies, Viral ,medicine.disease_cause ,Mice ,0302 clinical medicine ,Viral Envelope Proteins ,Immune Physiology ,lcsh:Science ,Phylogeny ,0303 health sciences ,Multidisciplinary ,biology ,Animal Models ,Antivirals ,3. Good health ,Infectious Diseases ,030220 oncology & carcinogenesis ,Medicine ,Immunotherapy ,Antibody ,Camelids, New World ,Research Article ,Rabies ,Recombinant Fusion Proteins ,Immunology ,Microbiology ,Antibodies ,03 medical and health sciences ,Model Organisms ,Antigen ,Peptide Library ,Virology ,Escherichia coli ,medicine ,Animals ,Humans ,Avidity ,Peptide library ,Biology ,030304 developmental biology ,QR355 ,Rabies virus ,lcsh:R ,Immunity ,Single-Domain Antibodies ,medicine.disease ,Antibodies, Neutralizing ,Single-domain antibody ,Rabies Vaccines ,biology.protein ,Clinical Immunology ,lcsh:Q ,Protein Multimerization - Abstract
Post-exposure prophylactic (PEP) neutralizing antibodies against Rabies are the most effective way to prevent infection-related fatality. The outer envelope glycoprotein of the Rabies virus (RABV) is the most significant surface antigen for generating virus-neutralizing antibodies. The small size and uncompromised functional specificity of single domain antibodies (sdAbs) can be exploited in the fields of experimental therapeutic applications for infectious diseases through formatting flexibilities to increase their avidity towards target antigens. In this study, we used phage display technique to select and identify sdAbs that were specific for the RABV glycoprotein from a naïve llama-derived antibody library. To increase their neutralizing potencies, the sdAbs were fused with a coiled-coil peptide derived from the human cartilage oligomeric matrix protein (COMP48) to form homogenous pentavalent multimers, known as combodies. Compared to monovalent sdAbs, the combodies, namely 26424 and 26434, exhibited high avidity and were able to neutralize 85-fold higher input of RABV (CVS-11 strain) pseudotypes in vitro, as a result of multimerization, while retaining their specificities for target antigen. 26424 and 26434 were capable of neutralizing CVS-11 pseudotypes in vitro by 90–95% as compared to human rabies immunoglobulin (HRIG), currently used for PEP in Rabies. The multimeric sdAbs were also demonstrated to be partially protective for mice that were infected with lethal doses of rabies virus in vivo. The results demonstrate that the combodies could be valuable tools in understanding viral mechanisms, diagnosis and possible anti-viral candidate for RABV infection.
- Published
- 2013
25. A Novel Transgenic Mouse Line for Tracing MicroRNA-155-5p Activity In Vivo
- Author
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Phiwpan, Krung, primary, Guo, Jie, additional, Zhang, Wei, additional, Hu, Tanyu, additional, Boruah, Bhargavi M., additional, Zhang, Jianhua, additional, and Zhou, Xuyu, additional
- Published
- 2015
- Full Text
- View/download PDF
26. The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency
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Jason D. Lieb, Andrey A. Shabalin, Andrew B. Nobel, Colin R. Lickwar, Bhargavi Rao, and Brian D. Strahl
- Subjects
Saccharomyces cerevisiae Proteins ,Transcription, Genetic ,Response element ,lcsh:Medicine ,E-box ,RNA polymerase II ,Saccharomyces cerevisiae ,Biology ,Molecular Biology/Histone Modification ,Histone Deacetylases ,03 medical and health sciences ,Transcription (biology) ,Genetics and Genomics/Genomics ,Molecular Biology/Chromatin Structure ,Promoter Regions, Genetic ,lcsh:Science ,RNA polymerase II holoenzyme ,Molecular Biology/DNA Methylation ,030304 developmental biology ,Genetics ,0303 health sciences ,Multidisciplinary ,General transcription factor ,Molecular Biology/Transcription Elongation ,030302 biochemistry & molecular biology ,lcsh:R ,Genetics and Genomics/Gene Expression ,Promoter ,Methyltransferases ,Molecular Biology/Transcription Initiation and Activation ,Microarray Analysis ,TAF2 ,biology.protein ,RNA ,lcsh:Q ,RNA Polymerase II ,Algorithms ,Research Article - Abstract
In cells lacking the histone methyltransferase Set2, initiation of RNA polymerase II transcription occurs inappropriately within the protein-coding regions of genes, rather than being restricted to the proximal promoter. It was previously reported that this "cryptic" transcription occurs preferentially in long genes, and in genes that are infrequently transcribed. Here, we mapped the transcripts produced in an S. cerevisiae strain lacking Set2, and applied rigorous statistical methods to identify sites of cryptic transcription at high resolution. We find that suppression of cryptic transcription occurs independent of gene length or transcriptional frequency. Our conclusions differ with those reported previously because we obtained a higher-resolution dataset, we accounted for the fact that gene length and transcriptional frequency are not independent variables, and we accounted for several ascertainment biases that make cryptic transcription easier to detect in long, infrequently transcribed genes. These new results and conclusions have implications for many commonly used genomic analysis approaches, and for the evolution of high-fidelity RNA polymerase II transcriptional initiation in eukaryotes.
- Published
- 2009
27. Preexisting CD4+ T-Cell Immunity in Human Population to Avian Influenza H7N9 Virus: Whole Proteome-Wide Immunoinformatics Analyses
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Duvvuri, Venkata R., primary, Duvvuri, Bhargavi, additional, Alice, Christilda, additional, Wu, Gillian E., additional, Gubbay, Jonathan B., additional, and Wu, Jianhong, additional
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- 2014
- Full Text
- View/download PDF
28. Retargeting T Cells for HER2-Positive Tumor Killing by a Bispecific Fv-Fc Antibody
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Wang, Lei, primary, He, Yanran, additional, Zhang, Ge, additional, Ma, Juan, additional, Liu, Changzhen, additional, He, Wen, additional, Wang, Wei, additional, Han, Huamin, additional, Boruah, Bhargavi M., additional, and Gao, Bin, additional
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- 2013
- Full Text
- View/download PDF
29. Single Domain Antibody Multimers Confer Protection against Rabies Infection
- Author
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Boruah, Bhargavi M., primary, Liu, Dawei, additional, Ye, Duan, additional, Gu, Tie-jun, additional, Jiang, Chun-lai, additional, Qu, Mingsheng, additional, Wright, Edward, additional, Wang, Wei, additional, He, Wen, additional, Liu, Changzhen, additional, and Gao, Bin, additional
- Published
- 2013
- Full Text
- View/download PDF
30. The Potential Impact of Improving Appropriate Treatment for Fever on Malaria and Non-Malarial Febrile Illness Management in Under-5s: A Decision-Tree Modelling Approach
- Author
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Rao, V. Bhargavi, primary, Schellenberg, David, additional, and Ghani, Azra C., additional
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- 2013
- Full Text
- View/download PDF
31. The Set2/Rpd3S Pathway Suppresses Cryptic Transcription without Regard to Gene Length or Transcription Frequency
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Lickwar, Colin R., primary, Rao, Bhargavi, additional, Shabalin, Andrey A., additional, Nobel, Andrew B., additional, Strahl, Brian D., additional, and Lieb, Jason D., additional
- Published
- 2009
- Full Text
- View/download PDF
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