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Modern computing architecture based on the separation of memory and processing leads to a well known problem called the von Neumann bottleneck, a restrictive limit on the data bandwidth between CPU and RAM. This paper introduces a new approach to computing we call AHaH computing where memory and processing are combined. The idea is based on the attractor dynamics of volatile dissipative electronics inspired by biological systems, presenting an attractive alternative architecture that is able to adapt, self-repair, and learn from interactions with the environment. We envision that both von Neumann and AHaH computing architectures will operate together on the same machine, but that the AHaH computing processor may reduce the power consumption and processing time for certain adaptive learning tasks by orders of magnitude. The paper begins by drawing a connection between the properties of volatility, thermodynamics, and Anti-Hebbian and Hebbian (AHaH) plasticity. We show how AHaH synaptic plasticity leads to attractor states that extract the independent components of applied data streams and how they form a computationally complete set of logic functions. After introducing a general memristive device model based on collections of metastable switches, we show how adaptive synaptic weights can be formed from differential pairs of incremental memristors. We also disclose how arrays of synaptic weights can be used to build a neural node circuit operating AHaH plasticity. By configuring the attractor states of the AHaH node in different ways, high level machine learning functions are demonstrated. This includes unsupervised clustering, supervised and unsupervised classification, complex signal prediction, unsupervised robotic actuation and combinatorial optimization of procedures–all key capabilities of biological nervous systems and modern machine learning algorithms with real world application. [ABSTRACT FROM AUTHOR]

This paper examines a biologically-inspired representation technique designed for the support of sensory-motor learning in developmental robotics. An interesting feature of the many topographic neural sheets in the brain is that closely packed receptive fields must overlap in order to fully cover a spatial region. This raises interesting scientific questions with engineering implications: e.g. is overlap detrimental? does it have any benefits? This paper examines the effects and properties of overlap between elements arranged in arrays or maps. In particular we investigate how overlap affects the representation and transmission of spatial location information on and between topographic maps. Through a series of experiments we determine the conditions under which overlap offers advantages and identify useful ranges of overlap for building mappings in cognitive robotic systems. Our motivation is to understand the phenomena of overlap in order to provide guidance for application in sensory-motor learning robots. [ABSTRACT FROM AUTHOR]

Quality assessment (QA) for predicted protein structural models is an important and challenging research problem in protein structure prediction. Consensus Global Distance Test (CGDT) methods assess each decoy (predicted structural model) based on its structural similarity to all others in a decoy set and has been proved to work well when good decoys are in a majority cluster. Scoring functions evaluate each single decoy based on its structural properties. Both methods have their merits and limitations. In this paper, we present a novel method called PWCom, which consists of two neural networks sequentially to combine CGDT and single model scoring methods such as RW, DDFire and OPUS-Ca. Specifically, for every pair of decoys, the difference of the corresponding feature vectors is input to the first neural network which enables one to predict whether the decoy-pair are significantly different in terms of their GDT scores to the native. If yes, the second neural network is used to decide which one of the two is closer to the native structure. The quality score for each decoy in the pool is based on the number of winning times during the pairwise comparisons. Test results on three benchmark datasets from different model generation methods showed that PWCom significantly improves over consensus GDT and single scoring methods. The QA server (MUFOLD-Server) applying this method in CASP 10 QA category was ranked the second place in terms of Pearson and Spearman correlation performance. [ABSTRACT FROM AUTHOR]

: The brain is able to maintain a stable perception although the visual stimuli vary substantially on the retina due to geometric transformations and lighting variations in the environment. This paper presents a theory for achieving basic invariance properties already at the level of receptive fields. Specifically, the presented framework comprises (i) local scaling transformations caused by objects of different size and at different distances to the observer, (ii) locally linearized image deformations caused by variations in the viewing direction in relation to the object, (iii) locally linearized relative motions between the object and the observer and (iv) local multiplicative intensity transformations caused by illumination variations. The receptive field model can be derived by necessity from symmetry properties of the environment and leads to predictions about receptive field profiles in good agreement with receptive field profiles measured by cell recordings in mammalian vision. Indeed, the receptive field profiles in the retina, LGN and V1 are close to ideal to what is motivated by the idealized requirements. By complementing receptive field measurements with selection mechanisms over the parameters in the receptive field families, it is shown how true invariance of receptive field responses can be obtained under scaling transformations, affine transformations and Galilean transformations. Thereby, the framework provides a mathematically well-founded and biologically plausible model for how basic invariance properties can be achieved already at the level of receptive fields and support invariant recognition of objects and events under variations in viewpoint, retinal size, object motion and illumination. The theory can explain the different shapes of receptive field profiles found in biological vision, which are tuned to different sizes and orientations in the image domain as well as to different image velocities in space-time, from a requirement that the visual system should be invariant to the natural types of image transformations that occur in its environment. [ABSTRACT FROM AUTHOR]

Why evolvability appears to have increased over evolutionary time is an important unresolved biological question. Unlike most candidate explanations, this paper proposes that increasing evolvability can result without any pressure to adapt. The insight is that if evolvability is heritable, then an unbiased drifting process across genotypes can still create a distribution of phenotypes biased towards evolvability, because evolvable organisms diffuse more quickly through the space of possible phenotypes. Furthermore, because phenotypic divergence often correlates with founding niches, niche founders may on average be more evolvable, which through population growth provides a genotypic bias towards evolvability. Interestingly, the combination of these two mechanisms can lead to increasing evolvability without any pressure to out-compete other organisms, as demonstrated through experiments with a series of simulated models. Thus rather than from pressure to adapt, evolvability may inevitably result from any drift through genotypic space combined with evolution's passive tendency to accumulate niches. [ABSTRACT FROM AUTHOR]

To help understand how semantic information is represented in the human brain, a number of previous studies have explored how a linear mapping from corpus derived semantic representations to corresponding patterns of fMRI brain activations can be learned. They have demonstrated that such a mapping for concrete nouns is able to predict brain activations with accuracy levels significantly above chance, but the more recent elaborations have achieved relatively little performance improvement over the original study. In fact, the absolute accuracies of all these models are still currently rather limited, and it is not clear which aspects of the approach need improving in order to achieve performance levels that might lead to better accounts of human capabilities. This paper presents a systematic series of computational experiments designed to identify the limiting factors of the approach. Two distinct series of artificial brain activation vectors with varying levels of noise are introduced to characterize how the brain activation data restricts performance, and improved corpus based semantic vectors are developed to determine how the word set and model inputs affect the results. These experiments lead to the conclusion that the current state-of-the-art input semantic representations are already operating nearly perfectly (at least for non-ambiguous concrete nouns), and that it is primarily the quality of the fMRI data that is limiting what can be achieved with this approach. The results allow the study to end with empirically informed suggestions about the best directions for future research in this area. [ABSTRACT FROM AUTHOR]