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Small terrestrial mammals are major hosts of infectious agents responsible for zoonotic diseases. Astroviruses (AstVs)–the cause of non-bacterial gastroenteritis mainly affecting young children–have been detected in a wide array of mammalian and avian host species. However, understanding the factors that influence AstV infection within and across hosts is limited. Here, we investigated the impact of land use changes on AstVs in terrestrial small mammals in rural northeastern Madagascar. We sampled 515 small mammals, representing seven endemic and four introduced species. Twenty-two positive samples were identified, all but one of which were found in the introduced species Mus musculus and Rattus rattus (family Muridae), with a positivity rate of 7.7% (6/78) and 5.6% (15/266), respectively. The non-introduced rodent case was from an endemic shrew-tenrec (family Tenrecidae). We found the highest positivity rate of AstVs infection in brushy regrowth (17.5%, 7/40) as compared to flooded rice fields (4.60%, 8/174), secondary forest (4.1%, 3/74), agroforest (3.6%, 1/28), village (2.61%, 3/115), and semi-intact forest (0%, 0/84). A phylogenetic analysis revealed an association between AstVs and their rodent host species. None of the viruses were phylogenetically related to AstVs previously described in Malagasy bats. This study supports AstV circulation in synanthropic animals in agricultural habitats of Madagascar and highlights the need to assess the spillover risk to human populations in rural areas. Author summary: This article describes the diversity of Astroviruses (AstVs) shed by Malagasy terrestrial small mammals and explores the impact of habitat degradation on positivity rate in animal reservoirs. Using a sample of 515 terrestrial small mammals from northeastern Madagascar, we show that AstV infection is almost exclusively restricted to rats and mice, suggesting that AstVs from terrestrial mammals were introduced to Madagascar. A phylogenetic analysis including AstVs sequences from Malagasy small mammals reveals a strong structuring of AstV sequences within host species, indicating limited host switching of these viruses among small mammals. Finally, positivity rates show that some habitat types are particularly conducive to AstV infection in reservoirs, such as rice fields where mice exhibit maximal infection. Altogether, presented data encourage the need for assessing the actual exposure of the local human population to the AstVs in small mammals, especially rice-field farmers. [ABSTRACT FROM AUTHOR]