1. Patterns of positive selection in six Mammalian genomes.
- Author
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Kosiol, Carolin, Vinar, Tomás, da Fonseca, Rute R, Hubisz, Melissa J, Bustamante, Carlos D, Nielsen, Rasmus, and Siepel, Adam
- Subjects
Animals ,Mammals ,Dogs ,Primates ,Macaca mulatta ,Humans ,Pan troglodytes ,Rodentia ,Mice ,Rats ,Likelihood Functions ,Bayes Theorem ,Sequence Alignment ,Evolution ,Molecular ,Phylogeny ,Gene Expression ,Genome ,Databases ,Genetic ,Selection ,Genetic ,Neurosciences ,Genetics ,Human Genome ,Biotechnology ,1.1 Normal biological development and functioning ,Developmental Biology - Abstract
Genome-wide scans for positively selected genes (PSGs) in mammals have provided insight into the dynamics of genome evolution, the genetic basis of differences between species, and the functions of individual genes. However, previous scans have been limited in power and accuracy owing to small numbers of available genomes. Here we present the most comprehensive examination of mammalian PSGs to date, using the six high-coverage genome assemblies now available for eutherian mammals. The increased phylogenetic depth of this dataset results in substantially improved statistical power, and permits several new lineage- and clade-specific tests to be applied. Of approximately 16,500 human genes with high-confidence orthologs in at least two other species, 400 genes showed significant evidence of positive selection (FDR
- Published
- 2008