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25 results

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1. LOTUS: A single- and multitask machine learning algorithm for the prediction of cancer driver genes.

2. Transient crosslinking kinetics optimize gene cluster interactions.

3. LMTRDA: Using logistic model tree to predict MiRNA-disease associations by fusing multi-source information of sequences and similarities.

4. A numerical approach for a discrete Markov model for progressing drug resistance of cancer.

5. A data-driven interactome of synergistic genes improves network-based cancer outcome prediction.

6. SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions.

7. Efficient pedigree recording for fast population genetics simulation.

8. Predicting B cell receptor substitution profiles using public repertoire data.

9. A marginalized two-part Beta regression model for microbiome compositional data.

10. Correcting for batch effects in case-control microbiome studies.

11. A multitask clustering approach for single-cell RNA-seq analysis in Recessive Dystrophic Epidermolysis Bullosa.

12. A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination.

13. Bayesian inference of phylogenetic networks from bi-allelic genetic markers.

14. A modeling study of budding yeast colony formation and its relationship to budding pattern and aging.

15. Clusternomics: Integrative context-dependent clustering for heterogeneous datasets.

16. Rearrangement moves on rooted phylogenetic networks.

17. Leveraging functional annotations in genetic risk prediction for human complex diseases.

18. Fast and general tests of genetic interaction for genome-wide association studies.

19. ESPRIT-Forest: Parallel clustering of massive amplicon sequence data in subquadratic time.

20. Likelihood-Based Inference of B Cell Clonal Families.

21. Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights.

22. Quorum-Sensing Synchronization of Synthetic Toggle Switches: A Design Based on Monotone Dynamical Systems Theory.

23. Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies.

24. A Scalable Computational Framework for Establishing Long-Term Behavior of Stochastic Reaction Networks.

25. Modeling Mutual Exclusivity of Cancer Mutations.