Search

The article discusses the significance of citing references in research works pertaining to ecology and the environment. According to the author, research works and such other papers about ecology the foundation of ecological science. The credibility of scientific work depends on its verifiable citations which functions to support the arguments presented in the paper. However, the author argues that there is no existing studies which explore the suitability or even fidelity of citations in ecological journals.

In general, ectoparasitoids attack concealed hosts in protected situations whereas endoparasitoids use both concealed and exposed hosts. The difference is assumed to be the consequence of ecological constraints; ectoparasitic larvae are vulnerable both to predation and to climatic factors such as rainfall, and, hence, require some structures to protect themselves. I hypothesized that such ecological constraints should act as a within-species selection pressure to female ectoparasitoids, and hence that females should recognize the degree of concealment of the host and prefer concealed over exposed hosts for oviposition. To test this hypothesis, I examined 1) whether host concealment could influence host acceptance by the ectoparasitoid wasp Agrothereutes lanceolatus and 2) whether host concealment could influence the fitness of the offspring. Female wasps recognized and attacked (probed) both cocooned and exposed host prepupae in equal proportions, but discriminated between them after ovipositor insertion, and preferred the former for oviposition and the latter for host-feeding. They also selected to oviposit on hosts concealed in paper tubes. Thus host concealment was important for host selection in A. lanceolatus . Offspring fitness (measured as survival and size) was much lower on exposed hosts than on cocooned and paper-concealed hosts, even under laboratory conditions. Thus, host concealment influenced the fitness of wasp offspring, and, hence, is a good indicator of host quality for female wasps. Adaptiveness of host selection and host-feeding in A. lanceolatus in relation to host concealment is discussed. [ABSTRACT FROM AUTHOR]

Biologists have long been fascinated by species’ borders, and with good reason. Understanding the ecological and evolutionary dynamics of species’ borders may prove to be the key that unlocks new understanding across a wide range of biological phenomena. After all, geographic range limits are a point of entry into understanding the ecological niche and threshold responses to environmental change. Elucidating patterns of gene flow to, and returning from, peripheral populations can provide important insights into the nature of adaptation, speciation and coevolution. Species’ borders form natural laboratories for the study of the spatial structure of species interactions. Comparative studies from the center to the margin of species’ ranges allow us to explore species’ demographic responses along gradients of increasing environmental stress. Range dynamics further permit investigation into invasion dynamics and represent bellweathers for a changing climate. This set of papers explores ecological and evolutionary dynamics of species’ borders from diverse empirical and theoretical perspectives. [ABSTRACT FROM AUTHOR]

Unprecedented rates of species extinctions have prompted extensive research into the consequences of biodiversity losses on ecosystem functioning. While aquatic species are most threatened, research with freshwater and marine model systems has lagged behind progress made in terrestrial environments. This editorial to a special feature summarizes the main outcomes of a conference aimed at setting the stage for exploring the potential of aquatic systems to assess the role of biodiversity in ecosystem functioning. This series of papers proposes fresh approaches to the study of biodiversity effects on ecosystem functioning, outlines a new way of analyzing experimental data, presents a model that considers scale as an important factor determining outcomes, explores the effects of multiple stressors on species richness and ecosystem processes, and develops a food-web perspective that relates ecosystem properties to biodiversity. An insightful synthesis of lessons learned from aquatic systems is premature at present, but the papers clearly demonstrate the role that marine and freshwater systems can play in resolving open questions. The implications go well beyond the biodiversity in, and functioning of, ecosystems shaped by free-flowing or standing water. [ABSTRACT FROM AUTHOR]

This paper is a response to Petchey and Gaston's criticism of our previous paper on the measurement of dendrogram-based functional diversity. In contrast to their suggestions, we insist that Euclidean distance is unsuitable to the analysis of variables with mixed scale types and maintain our earlier view that both the distance function and the clustering method can influence the dendrogram-based measure of functional diversity. We propose an extension of Gower's formula to accommodate nominal traits with non-exclusive categories and emphasize the necessity of the methodological standardization of functional diversity measures. [ABSTRACT FROM AUTHOR]

Comments on the elements of ecology and evolution. Ecological stoichiometry as the study of the balance of energy and multiple chemical elements in ecological interactions; Expansion of the concept of ecological stoichiometry to other organism and other ecosystems; Applications and horizons for stoichiometric theory.

The article introduces the November 2003 issue of the journal "Oikos." The paper in this issue are contributions to a symposium held at the Department of Animal Ecology, Lund University, February 21-24, 2002. It says that study and analysis of migration are important elements of evolutionary ecological research. Current immigration research is dynamic as manifested by an expanding theoretical fundament based on locomotion mechanics, transport ecology and optimality theory, along with a growing body of experimental evidence abut the animals' orientation mechanisms, physiological adaptations and the genetic regulation of different migratory traits. The aim of the symposium was to evaluate the current interplay between theoretical considerations of time and energy factors in migration and the overall migration performance in time and space as recorded under natural conditions in the field.

Introduces papers from the workshop 'Context-dependence in plant-herbivore interactions,' held October 2001 in Ekenas, Sweden. Discussion of plant-herbivore interactions in both ecological and evolutionary time; Above versus below ground processes; Spatial scales; Evolutionary aspects.

Relationships between species abundance and occupancy are of considerable interest in metapopulation biology and in macroecology. Such relationships may be described concisely using probability models that characterize variation in abundance of a species. However, estimation of the parameters of these models in most ecological problems is impaired by imperfect detection. When organisms are detected imperfectly, observed counts are biased estimates of true abundance, and this induces bias in stated occupancy or occurrence probability. In this paper we consider a class of models that enable estimation of abundance/occupancy relationships from counts of organisms that result from surveys in which detection is imperfect. Under such models, parameter estimation and inference are based on conventional likelihood methods. We provide an application of these models to geographically extensive breeding bird survey data in which alternative models of abundance are considered that include factors that influence variation in abundance and detectability. Using these models, we produce estimates of abundance and occupancy maps that honor important sources of spatial variation in avian abundance and provide clearly interpretable characterizations of abundance and occupancy adjusted for imperfect detection. [ABSTRACT FROM AUTHOR]

The question whether chaos exists in nature is much debated. In this paper we prove that chaotic parameter regions exist generically in food chains of length greater than three. While nonchaotic dynamics is also possible, the presence of chaotic parameter regions indicates that chaotic dynamics is likely. We show that the chaotic regions survive even at high exponents of closure. Our results have been obtained using a general food chain model that describes a large class of different food chains. The existence of chaos in models of such generality can be deduced from the presence of certain bifurcations of higher codimension. [ABSTRACT FROM AUTHOR]

Explaining the causes of regular multi annual oscillations (cycles) in animal populations has been a major problem for ecology, partly due to a lack of methodological rigor. In this paper we show how the analysis of R-functions, the functional relationship between the per capita rate of change of a species and components of its environment, can be used to detect the causes of population cycles. Analysis of the R-functions enables one to separate cycles due to negative feedback between species (endogenous causes) from those forced by one-way effects (exogenous causes). We illustrate the approach by reference to the spruce needle-miner inhabiting Danish spruce plantations, and conclude that population cycles in this insect are probably caused by interactions with two species of parasitic hymenoptera. [ABSTRACT FROM AUTHOR]

Quantifying the flow of matter and energy in food webs is indispensable when assessing the effects of increases in atmospheric carbon dioxide, ozone level and temperature as a result of global climate change. In insect nutritional ecology, quantification of digestive and metabolic efficiency is performed using gravimetric methods in all published cases. A few cases combined these methods with calorimetric and respirometric techniques. Since 1986, methodological pitfalls and sources of error inherent to applying gravimetry as the only method to construct nutrient budgets have been addressed in a number of papers without noticeable impact on subsequent research. Especially for insects feeding on living plant tissues, the gravimetric method has inherent handicaps as it can only be used with excised plant tissues and does not allow for the dynamics of plant metabolism. We discuss the major constraints of the gravimetric method as it pertains to the physiological processes of both the insect and plant. We apply a relationship between relative metabolic rate and relative growth rate of the insect for an analysis of the gravimetric literature. The analysis reveals that gravimetry has given rise to physiologically unlikely results for poikilothermic insects. This points to serious constraints on progress in this field. We identify plant respiration as the major source of error in gravimetric studies. We establish that no single study has, thus far, determined the metabolic efficiency of a herbivore feeding on a photosynthetically active plant with its phyllosphere microclimate. We argue that a quantitative understanding of the ecophysiology and nutritional ecology of insect–plant interactions must rely on the adoption of a combination of existing and complementary methods such as the double labelled water method and infrared gas analysis. [ABSTRACT FROM AUTHOR]

There is a widespread opinion among ecologists that ecology lacks general laws. In this paper I argue that this opinion is mistaken. Taking the case of population dynamics, I point out that there are several very general law-like propositions that provide the theoretical basis for most population dynamics models that were developed to address specific issues. Some of these foundational principles, like the law of exponential growth, are logically very similar to certain laws of physics (Newton's law of inertia, for example, is almost a direct analogue of exponential growth). I discuss two other principles (population self-limitation and resource-consumer oscillations), as well as the more elementary postulates that underlie them. None of the “laws” that I propose for population ecology are new. Collectively ecologists have been using these general principles in guiding development of their models and experiments since the days of Lotka, Volterra, and Gause. [ABSTRACT FROM AUTHOR]

This paper reviews the regular multiannual population fluctuations seen in voles and lemmings of the north. These periodically fluctuating small rodent populations all exhibit a clear two-dimensional density-dependent structure. This implies both a direct and a delayed annual density dependence and suggests that either a predator-prey type ofinteraction or a specialised plant-herbivore type of interaction (but not both) may be the underlying cause of these multiannual density cycles. Clear-cut experimental testing relating to these propositionsis lacking. A two-dimensional annual density-dependent structure is typically non-linear in a way which appropriately may be modelled as a threshold type of non-linearity and interpreted as a phase dependence in the density-dependent structure (implying further that the density-dependent structure is different in the increase and the decreasephase). Two clear-cut geographic gradients in the annual density-dependent structure are reviewed: the Fennoscandian gradient and the Hokkaidian gradient. The seasonal nature of the annual density-dependentstructure is furthermore reviewed: for voles in both Fennoscandia aswell as Hokkaido the direct annual density dependence during the winter (measured per time unit) is the strongest. The review closes witha survey of the main challenges within the field of 'small rodent cycles' -- the greatest of which is suggested to be the integration of demography and population dynamics. Here it is suggested to look at other population systems for potentially highly applicable model systems. It is concluded that the multiannual population cycles seen in voles and lemmings will continue to be a major source of conceptual andmethodological developments within the field of population ecology. [ABSTRACT FROM AUTHOR]

Species are not equally important for the functioning of communities. This fact is widely recognized and the term 'keystone species' has been introduced for the most important members of communities. In a recent paper, Power et al. claim for methods suitable for a priori identification of keystone species, which is an urgent problem in conservation biology. Another problem is the scarcity of their quantitativedescription. In this paper, we propose an index for characterizing keystone species reflecting their role in food web flow networks. We present some calculations for characterizing the role of keystones in weighted webs and discuss some problems of food web dynamics. Our keystone index refers well to keystones only if trophic interactions areof prime importance in a community. We further analyze the relationship between keystone species and the reliability of network flow. Keystones make network flow less reliable. Finally, we discuss some problems of stability and reliability in ecological systems. [ABSTRACT FROM AUTHOR]

When analysing how individuals allocate resources, sexual display should be regarded as is any other life-history trait: patterns of allocation are expected to be individually optimised. It thus follows that the costs of sexual selection can not be studied by simply comparing unmanipulated individual effort and some measure of cost. This rather trivial consequence of life-history theory has received surprisingly little attention in studies of sexual selection despite the almostuniversal acceptance of the theory and the fact that several papers have addressed the question specifically in the context of sexual selection. We therefore again outline why sexual displays are expected to be optimised at the level of the individual and why individuals with high access to resources should generally display at higher levels than individuals short of resources. We use some recent findings fromstudies of birds and spiders particularly relevant to the above questions that illustrate these principles. The examples we present show that the cost of sexual selection could be mediated in many ways and we thus suggest that future studies should focus on such mechanisms. [ABSTRACT FROM AUTHOR]

This paper explores the correspondence between the parameters of an extinction model analysedoeby Lande, Foley and Middleton et al. and the parameters of the incidence function model of metapopulation dynamics. The parameters of the extinction model, the intrinsic rate of population increase (r), its variance (v) and the population ceiling (K), can be mapped to the parameters of the incidence function model describing the scaling of the probability of local extinction (E) with area (A), E = e/Ax, via the equations s = x and r = eDs / s, where s = 2r / v, D is population density and K = DA. Iexplore this correspondence with two empirical examples, a mainland-island metapopulation of the European common shrew (Sorex araneus) onislands in lakes and a classical metapopulation of the American pika(Ochotona princeps). The most robust result is the correspondence x = 2r / v, which value decreases with increasing strength of environmental stochasticity. Thus the impact of environmental stochasticity onpopulation dynamics can, in principle, be inferred from the pattern of habitat patch occupancy in a metapopulation. [ABSTRACT FROM AUTHOR]

Reconciles the viewpoint of authors S.H. Hulbert and L. Oksanen on implications of pseudoreplication on ways to conduct valid experiments. Division of experimental ecologists into those who recognize the importance of replication and who ignore the need for replication; Use of inferential statistics to assess the reliability of descriptive statistics.

The author reflects on the changes made with the 116th volume of "Oikos" and the new features introduced by the publication to its readers. Oikos remains open to all aspects of ecology but it actively striving for a synthesis of knowledge and insights from many ecological fields and disciplines. The publication has changed the layout and typography of its first issue for 2007. To begin the year 2007, the publication has also changed the publisher and author copyrights.

Research on ecological communities, and plant–pollinator mutualistic networks in particular, has increasingly benefited from the theory and tools of complexity science. Nevertheless, up to now there have been few attempts to investigate the interplay between the structure of real pollination networks and their dynamics. This study is one of the first contributions to explore this issue. Biological invasions, of major concern for conservation, are also poorly understood from the perspective of complex ecological networks. In this paper we assess the role that established alien species play within a host community by analyzing the temporal changes in structural network properties driven by the removal of non-native plants. Three topological measures have been used to represent the most relevant structural properties for the stability of ecological networks: degree distribution, nestedness, and modularity. Therefore, we investigate for a detailed pollination network, 1) how its dynamics, represented as changes in species abundances, affect the evolution of its structure, 2) how topology relates to dynamics focusing on long-term species persistence; and 3) how both structure and dynamics are affected by the removal of alien plant species. Network dynamics were simulated by means of a stochastic metacommunity model. Our results showed that established alien plants are important for the persistence of the pollination network and for the maintenance of its structure. Removal of alien plants decreased the likelihood of species persistence. On the other hand, both the full network and the subset native network tended to lose their structure through time. Nevertheless, the structure of the full network was better preserved than the structure of the network without alien plants. Temporal topological shifts were evident in terms of degree distribution, nestedness, and modularity. However the effects of removing alien plants were more pronounced for degree distribution and modularity of the network. Therefore, elimination of alien plants affected the evolution of the architecture of the interaction web, which was closely related to the higher species loss found in the network where alien plants were removed. [ABSTRACT FROM AUTHOR]

This paper briefly presents the aims, requirements and results of partial least squares regression analysis (PLSR), and its potential utility in ecological studies. This statistical technique is particularly well suited to analyzing a large array of related predictor variables (i.e. not truly independent), with a sample size not large enough compared to the number of independent variables, and in cases in which an attempt is made to approach complex phenomena or syndromes that must be defined as a combination of several variables obtained independently. A simulation experiment is carried out to compare this technique with multiple regression (MR) and with a combination of principal component analysis and multiple regression (PCA+MR), varying the number of predictor variables and sample sizes. PLSR models explained a similar amount of variance to those results obtained by MR and PCA+MR. However, PLSR was more reliable than other techniques when identifying relevant variables and their magnitudes of influence, especially in cases of small sample size and low tolerance. Finally, we present one example of PLSR to illustrate its application and interpretation in ecology. [ABSTRACT FROM AUTHOR]

Despite the wide variation in the structural characteristics in natural forests, tree size distribution show fundamental similarities that suggest general underlying principles. The metabolic ecology theory predicts the number of individual scales as the −2 power of tree diameter. The demographic equilibrium theory predicts tree size distribution starting from the relationship of size distributions with growth and mortality at demographic equilibrium. Several analytic predictions for tree size distributions are derived from the demographic equilibrium theory, based on different growth and mortality functions. In addition, some purely phenomenological functions, such as polynomial function, have been used to describe the tree size distributions. In this paper, we use the metabolic ecology theory, the demographic equilibrium theory and the polynomial function to predict the tree size distribution for both the whole community and each species in an old-growth temperate forest in northeastern China. The results show that metabolic ecology theory predictions for the scaling of tree abundance with diameter were unequivocally rejected in the studied forest. Although these predictions of demographic theory are the best models for most of the species in the temperate forest, the best models for some species ( Tilia amurensis, Quercus mongolica and Fraxinus mandshurica) are compound curves (i.e. rotated sigmoid curves), best predicted by the polynomial function. Hence, the size distributions of natural forests were unlikely to be invariant and the predictive ability of general models was limited. As a result, developing a more sophisticated theory to predict tree size distributions remains a complex, yet tantalizing, challenge. [ABSTRACT FROM AUTHOR]

The area-and-isolation paradigm, which has been the primary focus of metapopulation research, may not hold in some animal metapopulations if within-patch preference is more important than patch area or connectivity. Recently, regression analyses have been used to evaluate the effect of patch connectivity and various patch qualities including area. However, their relative importance is not easy to determine, because patch qualities and connectivity are often spatially autocorrelated. In this paper, we try to evaluate the relative importance of within-patch quality, patch connectivity and spatial autocorrelation using variation partitioning methods from community ecology. We constructed three regression models: within-patch quality, PCNM (principal coordinates of neighbor matrices) and patch connectivity based on a one-season survey of a damselfly Copera annulata metapopulation. The contribution of within-patch quality was larger than that of connectivity. There was no prominent effect of patch area. We conclude that the area-and-isolation paradigm is not applicable to this C. annulata metapopulation. The spatial autocorrelation extracted by PCNM had the largest contribution; it contained almost all of the variation of connectivity and overlapped with variation explained by within-patch quality. Connectivity corresponded most closely to medium-scale spatial structure captured by PCNM (ca 640 m). The mean effective dispersal scale was estimated to be 53 m. Within-patch quality, debris accumulation and vegetation cover in the pond corresponded with the medium and small (ca 201 m) spatial scales from PCNM, though we could not clearly explain the cause of this correspondence. We believe that our method will contribute to quick and effective evaluation of spatial and non-spatial aspects of metapopulation. [ABSTRACT FROM AUTHOR]

Due to their haplo-diploid sex determination system and the resulting conflict over optimal sex allocation between queens and workers, social Hymenoptera have become important model species to study variation in sex allocation. While many studies indeed reported sex allocation to be affected by social factors such as colony kin structure or queen number, others, however, found that sex allocation was impacted by ecological factors such as food availability. In this paper, we present one of the rare studies that simultaneously investigated the effects of social and ecological factors on social insect nest reproductive parameters (sex and reproductive allocation, nest productivity) across several years. We found that the sex ratio was extremely male biased in a polygynous (multiple queens per nest) population of the ant Formica exsecta. Nest-level sex allocation followed the pattern predicted by the queen-replenishment hypothesis, which holds that gynes (new queens) should only be produced and recruited in nests with low queen number (i.e. reduced local resource competition) to ensure nest survival. Accordingly, queen number (social factor) was the main determinant on whether a nest produced gynes or males. However, ecological factors had a large impact on nest productivity and therefore on a nest's resource pool, which determines the degree of local resource competition among co-breeding queens and at what threshold in queen number nests should switch from male to gyne production. Additionally, our genetic data revealed that gynes are recruited back to their parental nests after mating. However, our genetic data are also consistent with some adult queens dispersing on foot from nests where they were produced to nests that never produced queens. As worker production is reduced in gyne-producing nests, queen migration might be offset by workers moving in the other direction, leading to a nest network characterized by reproductive division of labour. Altogether our study shows that both, social and ecological factors can influence long-term nest reproductive strategies in insect societies. [ABSTRACT FROM AUTHOR]

In this paper, we tested whether the spatial distribution of a given species in more or less fragmented and disturbed landscapes depends on the species habitat specialization. We studied 891 spatial replicates from the French Breeding Bird Survey (FBBS) monitored at least two years during 2001–2005, and two independent landscape databases measuring respectively landscape fragmentation and recent landscape disturbance on each FBBS replicate. We used a continuous habitat specialization index for the 105 most common bird species monitored by the FBBS. We further modelled the spatial variation in abundance of each species according to fragmentation and disturbance across FBBS replicates, accounting for habitat differences and spatial trends. We then tested whether more or less specialized species responded to landscape fragmentation and disturbance. We found that the more specialist a species, the more negative its spatial response to landscape fragmentation and disturbance. Although there was a very high variation around these tendencies indicating that there are many other drivers of species distribution, our results suggest that measuring specialization may be helpful in predicting which species are likely to thrive in human degraded landscapes. We also emphasize the need to consider both positive and negative species responses when assessing consequences of habitat change in communities. [ABSTRACT FROM AUTHOR]

This paper explores the effect of spatial processes in a heterogeneous environment on the dynamics of a host-parasitoid interaction. The environment consists of a lattice of favourable (habitat) and hostile (matrix) hexagonal cells, whose spatial distribution is measured by habitat proportion and spatial autocorrelation (inverse of fragmentation). At each time step, a fixed fraction of both populations disperses to the adjacent cells where it reproduces following the Nicholson-Bailey model. Aspects of the dynamics analysed include extinction, stability, cycle period and amplitude, and the spatial patterns emerging from the dynamics. We find that, depending primarily on the fraction of the host population that disperses in each generation and on the landscape geometry, five classes of spatio-temporal dynamics can be objectively distinguished: spatial chaos, spirals, metapopulation, mainland-island and spiral fragments. The first two are commonly found in theoretical studies of homogeneous landscapes. The other three are direct consequences of the heterogeneity and have strong similarities to dynamic patterns observed in real systems (e.g. extinction-recolonisation, source-sink, outbreaks, spreading waves). We discuss the processes that generate these patterns and allow the system to persist. The importance of these results is threefold: first, our model merges into a same theoretical framework dynamics commonly observed in the field that are usually modelled independently. Second, these dynamics and patterns are explained by dispersal rate and common landscape statistics, thus linking in a practical way population ecology to landscape ecology. Third, we show that the landscape geometry has a qualitative effect on the length of the cycles and, in particular, we demonstrate how very long periods can be produced by spatial processes. [ABSTRACT FROM AUTHOR]

Ecological research sometimes entails animal suffering and even animal killing. The ethical appropriateness of animal suffering and killing in conservation research may entail considerations that differ from many other kinds of research. This is true, insomuch as conservation research is specifically motivated by an ethical premise: an appreciation for non-human life. In striking contrast with other academic fields (e.g. medicine), however, the ethical dimension of conservation research is only rarely discussed. When it is discussed, it tends to be characterized by logical errors. These errors are important because they are general (i.e. both common and with far-reaching implications), and they are easily made by intelligent people; especially those with no formal training in ethics or logic. Failure to recognize these errors could stymie efforts to increase the ethical quality of ecological research conducted in the name of conservation. We take advantage of a recently published dialogue concerning the ethical appropriateness of a specific field experiment that entailed killing black-throated blue warblers, Dendroica caerulescens. Both sides of this debate exemplify the kinds of errors to which we refer. In this paper we briefly review the arguments presented on each side of this debate, highlight their mistakes, and indicate necessary corrections. We argue that: (1) compliance with animal research regulations, while important, inadequately accommodates the ethical aspects of animal research, and (2) individual ecologists ought to understand themselves what does and does not represent sound and valid arguments for ethical decisions. Finally, we discuss how any ecological researcher might begin to apply our analysis to his or her own research. [ABSTRACT FROM AUTHOR]

The striking amount of variation in the mating systems of higher plants has stimulated fruitful research by both ecologists and population geneticists. Historically, these two schools of thought have developed independent theoretical treatments and empirical approaches to account for the evolution of such diversity. We highlight the approach adopted by each field. Population geneticists have developed an approach centred on gene properties of individuals and their role on the evolution of self-fertilisation (transmission rules and the deleterious role of mutations), while ecologists have mostly focused on demographic properties of self-fertilisation (seed production, colonisation ability of selfers). As a result, the two approaches sometimes use conflicting notions of fitness. The recent empirical advances on inbreeding depression, a topic typically motivated by population genetic questions, have emphasized the need to adopt a demographical perspective for fitness. In this paper, we suggest generalizing this approach in mating system evolution and we expect further improvements by integrating demographic and genetics perspectives. [ABSTRACT FROM AUTHOR]

Species distributions often show an aggregated pattern, which can be due to a number of endo- and exogenous factors. While autologistic models have been used for modelling such data with statistical rigour, little emphasis has been put on disentangling potential causes of aggregation. In this paper we ask whether it is possible to infer sources of aggregation in species distributions from a single set of occurrence data by comparing the performance of various autologistic models. We create simulated data sets, which show similar occupancy patterns, but differ in the process that causes the aggregation. We model the distribution of these data with various autologistic models, and show how the relative performance of the models is sensitive to the factor causing aggregation in the data. This information can be used when modelling real species data, where causes of aggregation are typically unknown. To illustrate, we use our approach to assess the potential causes of aggregation in data of seven bird species with contrasting statistical patterns. Our findings have important implications for conservation, as understanding the mechanisms that drive population fluctuations in space and time is critical for the development of effective management actions for long-term conservation. [ABSTRACT FROM AUTHOR]

Bacteria and fungi often share a common substrate, and their spatial proximity in many environments has lead to either synergistic or antagonistic interactions. In this paper, the interaction of bacterial and fungal decomposers from an aquatic environment was studied. We found indications of a tradeoff between fungal growth and tolerance towards bacteria. Fungal strains growing best in absence of bacteria were most severely affected by bacterial presence, while those less suppressed during co-existence with bacteria had lower maximal growth rates in bacterial absence. Additionally, we show that the antagonism between bacteria and fungi is connected to competition for substrate, but that this competition can be drastically altered if fungi are given an opportunity to establish before inoculation of bacteria. Established fungi out-competed bacteria, and gained higher biomass than in simultaneously inoculated treatments with higher substrate concentrations. [ABSTRACT FROM AUTHOR]

We test whether the spatial distribution of birds within a habitat is determined by predation risk and also by interspecific competition. The work was carried out in a montane mixed forest of central Spain with four Parus species, the long-tailed tit ( Aegithalos caudatus) and the nuthatch ( Sitta europaea). Experimental feeders, that varied in their risk of predation, were used to control the effect of natural variations in food availability and quality on the habitat use patterns of different species. Tree gleaning passerines avoided feeding on dark inner forest places far from edges, distant from protective cover, outside the inner tree canopy and near the ground; they preferred deciduous, relatively clear forest plots. These effects remained invariable across years and weather conditions. There was a common pattern of selection of foraging locations by the four Parus species: proximity to cover and height above ground and over the lowest branches of the tree canopy positively influenced the use of feeding places. According to these patterns, the vigilance proportion of species was significantly higher when feeding far from cover than when birds were feeding near pine foliage. This pattern was also common for the four studied Parus species. Nevertheless, the interspecific dominance hierarchy of the species was positively correlated with the use of the safest feeders (feeders farther the ground and nearer from protective cover within tree canopy), being the converse with the most exposed ones. Therefore, the results of this paper demonstrate that the selection of feeding locations within habitat follows a pattern minimizing predation risk. Interspecific dominance hierarchies can lead to the exploitation of unfavourable risky patches by subordinate species. [ABSTRACT FROM AUTHOR]

The species–time relationship (STR) describes how the species richness of a community increases with the time span over which the community is observed. This pattern has numerous implications for both theory and conservation in much the same way as the species–area relationship (SAR). However, the STR has received much less attention and to date only a handful of papers have been published on the pattern. Here we gather together 984 community time-series, representing 15 study areas and nine taxonomic groups, and evaluate their STRs in order to assess the generality of the STR, its consistency across ecosystems and taxonomic groups, its functional form, and its relationship to local species richness. In general, STRs were surprisingly similar across major taxonomic groups and ecosystem types. STRs tended to be well fit by both power and logarithmic functions, and power function exponents typically ranged between 0.2 and 0.4. Communities with high richness tended to have lower STR exponents, suggesting that factors increasing richness may simultaneously decrease turnover in ecological systems. Our results suggest that the STR is as fundamental an ecological pattern as the SAR, and raise questions about the general processes underlying this pattern. They also highlight the dynamic nature of most species assemblages, and the need to incorporate time scale in both basic and applied research on species richness patterns. [ABSTRACT FROM AUTHOR]

Many investigations in current ecological research focus on ecological functions, the functions of biodiversity, or the functioning of ecological systems. However, within ecology “function” is used in several different meanings. The most important ones are those of function as denoting either processes, roles, services or the “functioning” of whole systems. Some of these meanings pose considerable problems in terms of their ability to apply them in empirical research. These problems together with the ambiguity of the term “function” constitute considerable impediments for generalizations of research results. In order to improve this situation, the current paper describes the different meanings of “function” and discusses the requirements necessary to unambiguously apply the concept(s) in practice. This is illustrated by the example of current discussions on the “functions of biodiversity”. [ABSTRACT FROM AUTHOR]

Holling's type II functional response is a cornerstone of community ecology and coevolutionary theory. The so-called disc equation is the most widely used model of the type II response, yet thus far no robust experimental assessment has been achieved in any single system. Fundamental issues that remain to be assessed include whether the assumptions of the disc equation are fulfilled, whether the disc equation yields accurate estimates of predation-related individual traits, and whether differences in disc equation parameters can capture genetic variation in prey behaviour. This paper provides a rigorous approach to all of these questions. The functional response of the predatory mite Pergamasus crassipes on three genetically distinct clones of the springtail Folsomia candida was measured at six levels of prey density in controlled conditions where prey number and arena size were concomitantly manipulated. A crucial assumption of Holling's disc equation was fulfilled by maintaining a constant prey density for the entire experimental period of predation. The timing of each attack and capture, as well as the duration of the handling time, were recorded by constant observation. We contrasted three different methods to calculate functional response curves: (1) indirect estimation of the disc equation's parameters from the number of prey killed by the end of each experimental run; (2) direct estimation of the parameters via a unique protocol of constant observation; and (3) independently deriving a function based on direct measurements of encounter rate and attack success. The basic assumptions of the disk equation were globally fulfilled. Estimations of the functional response's parameters (type II) were remarkably congruent across approach (1) and (2). A single genetic effect was detected – the relationship between the encounter rate and prey density differed significantly between clones – whereas a direct comparison of functional response across clones failed to reveal genetic variation. [ABSTRACT FROM AUTHOR]

In this paper we investigate ecological flow networks via graph theory in search of the real sequential chains through which energy passes from producers to consumers in complex food webs. We obtain such fundamental pathways by identifying strongly connected components (SCCs), subsystems that groups species that take part in cycling, and performing topological sorting on the acyclic graphs that are obtained. Topological sorting identifies preferential directions for energy to flow from sources to sinks, while recycling remains confined within each SCC. Resolving food web networks for SCC highlights the possibility that compartments can be found in ecosystems, but this does not seem a general rule. The four aquatic food webs described in detail show a rather clear subdivision between benthic and pelagic subcommunities, a result that is discussed in the light of other studies. Should further research confirm these results, new insight into the way ecosystems use energy will be provided, with implications on cycling, reciprocal dependency of variables and indirect effects. [ABSTRACT FROM AUTHOR]

This paper reports the effects of food supply, predation and the interaction between them on the population dynamics of root voles,Microtus oeconomus, by adopting factorial experiments in field enclosures. This two-factor experiment proved the general hypothesis that food supply and predation had independent and additive effects on population dynamics of root voles. The experimental results proved the following predictions: (1) predation reduced population density and recruitment significantly; (2) food supply increased population density; (3) predation and food supply influenced spacing behavior of root voles separately and additively: Exposure to predation reduced long movements of root voles between trapping sessions; additional food supply reduced aggression level and home range size of root voles. Less movement of individuals that exposed to predators possibly reduced their opportunity of obtaining food and lessened population survival rate, which led population density to decrease. Smaller home range and lower aggression level could make higher population density tolerable. The interactive effect of predation and food on home range size was highly significant (P=0.0082<0.01). The interactive effect of food and predation on dispersal rate was significant (P<0.01). From the experimental results, we conclude that the external factors (predation, food supply) were more effective than internal factors (spacing behavior) in determining population density of root voles– under the most favorable external conditions (−P, +F treatment), the mean density and mean recruitment of root vole population was the highest; under the most unfavorable external conditions (+P,−F treatment), the mean density and mean recruitment of root vole population was the lowest. [ABSTRACT FROM AUTHOR]

Human activities have differentially altered biogeochemical cycling at local, regional and global scales. We propose that a stoichiometric approach, examining the fluxes of multiple elements and the ratio between them, may be a useful tool for better understanding human effects on ecosystem processes and services. The different scale of impacts of the elements carbon, nitrogen and phosphorus and the different nature of their biogeochemical cycles, imply a large variation of their stoichiometric ratios in space and time and thus divergent impacts on biota.In this paper, we examine the effects of anthropogenic perturbations on nutrient ratios in ecosystems in two examples and one case study. Altered stoichiometry in agricultural systems (example 1) can affect not only crop yield and quality but also the interactions between plants and their pollinators, pests and pathogens. Human activities have also altered stoichiometry in coastal ecosystems (example 2). Increased N loading has especially lead to increased N:P and reduced Si:N ratios, with detrimental effects on ecosystem services derived from coastal pelagic food webs, such as fish yield and water quality. The terrestrial–aquatic linkage in stoichiometric alterations is illustrated with a case study, the Mississippi River watershed, where anthropogenic activities have caused stoichiometric changes that have propagated through the watershed into the northern Gulf of Mexico.Coupled with altered stoichiometric nutrient inputs are the inherent differences in variation and sensitivity of different ecosystems to anthropogenic disturbance. Furthermore, the connections among the components of a watershed may result in downstream cascades of disrupted functioning. Applying a multiple element perspective to understanding and addressing societal needs is a new direction for both ecological stoichiometry and sustainability. [ABSTRACT FROM AUTHOR]

In an ecological community, groups of species may or may not have a nested structure. Furthermore, any nested structure detected could have several causes, each of which would have to be identified, since they may have important theoretical and management implications. In this paper, I assessed the nested structure of bird communities using cloud forest fragments in eastern Mexico to identify bird species and groups of species sensitive to cloud forest fragmentation. Sensitive species were expected to have a nested arrangement highly correlated with forest fragmentation intensity. Analysis identified the following groups of birds as showing a nested structure highly correlated with cloud forest fragmentation: birds with a body mass between 100 and 300 g and larger than 600 g, some trophic behavioural guilds (terrestrial granivore, terrestrial granivore–frugivore, understory granivore–frugivore, arboreal granivore–frugivore, gleaning terrestrial insectivore, gleaning understory insectivore, cliff gleaning insectivore, nocturnal aerial insectivore, diurnal raptor, nocturnal raptor, terrestrial omnivore, scavenger), forest interior and generalist birds, species restricted to cloud forest, and threatened species. This study shows that the analysis of the nested species assemblage can be considered a useful tool to identify species sensitivity to ecological or landscape patterns and processes, in this case, species or groups of species affected by a fragmented landscape pattern. [ABSTRACT FROM AUTHOR]

With the increasing concern about species conservation, a need exists for quantitaive characterization of species’ geographic range and their borders. In this paper, we survey tools appropriate for the quantification of static spatial patterns related to geographical ranges and their borders. We then build on these static methods to consider the problem of changes in geographic range through time. Methods discussed are illustrated using lark sparrow data from the North American Breeding Bird Survey. While there is no such thing as the“best” or“only” method to analyze species geographical range and border, we show that a series of methods can be used in sequence to provide complementary and useful quantitative information for species occupancy of range. Indeed, the location of species’ borders estimated at different times can be compared to identify locations where species expand or go locally extinct. The ability to delineate accurately species’ ranges will be useful to conservation biologists, managers and ecologists. [ABSTRACT FROM AUTHOR]

In this paper we will outline several empirical approaches to developing and testing hypotheses about the determinants of species borders. We highlight environmental change as an important opportunity– arguing that these unplanned, large-scale manipulations can be used to study mechanisms which limit species distributions. Our discussion will emphasize three main ideas. First, we review the traditional biogeographic approach. We show how modern analytical and computer techniques have improved this approach and generated important new hypotheses concerning species’ range determinants. However, abilities to test those hypotheses continue to be limited. Next we look at how the additions of temporal data, field and lab experimentation, biological details and replication, when applied to systems that have been the subject of classical biogeographic studies, have been used to support or refute hypotheses on range determinants. Such a multi-faceted approach adds rigor, consistency and plausible mechanisms to the study of species ranges, and has been especially fruitful in the study of climate and species’ ranges. Lastly, we present an alternative avenue for exploration of range-limiting mechanisms which has been under-utilized. We argue that carefully designed comparisons and contrasts between groups of species or systems provide a powerful tool for examining hypotheses on species’ borders. The seasonality hypothesis as an explanation for Rapoport's rule serves as a model of this approach. A test is constructed by comparing patterns of seasonality and range size among marine and terrestrial systems. The seasonality hypothesis is not supported. [ABSTRACT FROM AUTHOR]

Studies of microbial communities from aquatic ecosystems provide important insights into relations between various aspects of ecosystem functioning and changes in biodiversity. Aquatic microbial systems provide a valuable counterpoint to studies of terrestrial systems, because patterns reflect consequences of interactions occurring over many generations of community development, and are unlikely to represent artifacts of the initial conditions established in experimental communities. In this paper we re-analyse our previously published data to separate the contributions of temporal and spatial variation to overall variation in ecosystem functioning. A new analysis based on re-sampling confirms a negative relationship between richness and the variability of one ecosystem process, carbon dioxide flux. The negative relationship reflects high variation among communities of low species richness, rather than high temporal variation within communities of low richness. We also review the various transformations and summary statistics proposed as alternate measures of variability in ecosystem functioning, to point out that different measures are often appropriate for different kinds of data. Finally, we conclude that arguments about the cosmopolitan distribution of microbes do not preclude the existence of important relations between microbial species richness and ecosystem functioning. [ABSTRACT FROM AUTHOR]

A large number of methods for the analysis of point pattern data have been developed in a wide range of scientific fields. First-order statistics describe large-scale variation in the intensity of points in a study region, whereas second-order characteristics are summary statistics of all point-to-point distances in a mapped area and offer the potential for detecting both different types and scales of patterns. Second-order analysis based on Ripley's K-function is increasingly used in ecology to characterize spatial patterns and to develop hypothesis on underlying processes; however, the full range of available methods has seldomly been applied by ecologists. The aim of this paper is to provide guidance to ecologists with limited experience in second-order analysis to help in the choice of appropriate methods and to point to practical difficulties and pitfalls. We review (1) methods for analytical and numerical implementation of two complementary second-order statistics, Ripley's K and the O-ring statistic, (2) methods for edge correction, (3) methods to account for first-order effects (i.e. heterogeneity) of univariate patterns, and (4) a variety of useful standard and non-standard null models for univariate and bivariate patterns. For illustrative purpose, we analyze examples that deal with non-homogeneous univariate point patterns. We demonstrate that large-scale heterogeneity of a point-pattern biases Ripley's K-function at smaller scales. This bias is difficult to detect without explicitly testing for homogeneity, but we show that it can be removed when applying methods that account for first-order effects. We synthesize our review in a number of step-by-step recommendations that guide the reader through the selection of appropriate methods and we provide a software program that implements most of the methods reviewed and developed here. [ABSTRACT FROM AUTHOR]

The Janzen-Connell hypothesis explains the maintenance of tropical diversity through the interacting effects of parent-centered dispersal patterns and distance- and density-dependent propagule survival. These effects were thought to support regular spacing of species within tropical forest, enhancing diversity. One of the predictions of the hypothesis is that seed and seedling survival should improve with increased parental distance. Although there are many independent tests of this hypothesis for individual species, there are few synthetic studies that have brought these data together to test its validity across species. This paper reports the results of a meta-analysis of the effect of distance on enhancing propagule survival, employing an odds-ratio effect size metric. We found no general support for the distance-dependent prediction of the hypothesis, and conclude that further testing to explore this hypothesis as a diversity-maintaining mechanism is unnecessary. However, we did find that distance from parent slightly reduces survivorship in the temperate zone, as contrasted with the tropics, and we saw stronger evidence in support of the hypothesis for seedlings than for seeds. The phenomenon of enhanced propagule survival with distance from the parent may be important for the population biology of particular species, but it is not a general phenomenon across communities, life history stages or life forms. [ABSTRACT FROM AUTHOR]

Empirical studies for different life histories have shown an inverse relationship between elasticity (i.e. the proportional contribution to population growth rate) and temporal variation in vital rates. It is accepted that this relationship indicates the effect of selective pressures in reducing variation in those life-history traits with a major impact on fitness. In this paper, we sought to determine whether changes in environmental conditions affect the relationship between elasticity of vital rates and their temporal variation, and whether vital rates with simultaneously large elasticity and temporal variation might represent a characteristic life-history strategy. We used demographic data on 13 populations of the short-lived Hypericum cumulicola over 5–6 years, in three time-since-fire classes. For each population of each time-since-fire, we computed the mean matrix over years and its respective elasticity matrix, and the coefficients of variation in matrix entries over study years as an estimate of temporal variability. We found that mean elasticity negatively significantly correlated with temporal variation in vital rates in populations (overall eight out of 13) included in each time-since-fire. However, seedling recruitment exhibited both high elasticity and high temporal variation in almost all study populations. These results indicated that (1) the general relationship between elasticity and temporal variation in vital rates was not modified by environmental changes due to time-since-fire, and (2) high elasticity and high temporal variation in seedling recruitment in H. cumulicola is a particular trait of the species' life history. After seed survival in the soil seed bank, seedling recruitment represents the most important life-history trait influencing H. cumulicola population growth rate (and fitness). The high temporal variability in seedling recruitment suggests that this trait is determined by environmental cues, leading to an increase in population size and subsequent replenishment of the seed bank in favorable years. [ABSTRACT FROM AUTHOR]

Landscape connectivity is critical to the maintenance of spatially-structured populations and consists of both a structural component, which describes the shape, size and location of landscape features; and a biological component, which consists of both the response of individuals to landscape features, and the patterns of gene flow that result from those individual responses. Traditional studies of landscape connectivity have attempted to discern individual behavioral responses to landscape features, but this methodology is intractable for many species. This paper is an attempt to relate the components of landscape connectivity through the explicit treatment of their spatial and temporal scales. Traditional measures of structural and biological components of connectivity are reviewed and more recently developed methods for the analysis of scale for each are introduced. I then present a framework for the comparison of scalar phenomena based on Watt's unit pattern, describe the potential outcomes of the comparison and discuss the implications of each. Several testable hypotheses emerge from the analysis that may serve as a useful framework for the investigation of landscape connectivity in the future . [ABSTRACT FROM AUTHOR]

Nutrient resorption is an important process during leaf senescence, which helps plants to minimize nutrient losses. To quantify nutrient resorption, the parameter resorption efficiency is commonly used. This parameter describes the percentage of the nutrient pool withdrawn before leaf abscission. The nutrient pool is generally expressed on the basis of leaf mass or leaf area, assuming that these bases do not change during senescence. In this paper we firstly present a mathematical formula describing the effect of change in measurement basis on the difference between the real resorption efficiency (RRE) value and the measured resorption efficiency (MRE). This formula shows that even moderate senescence-related changes in a measurement basis can lead to considerable underestimation of RRE. Secondly, to estimate the general change in measurement basis we quantified leaf mass loss and leaf shrinkage during senescence from literature data. These data shows that mass loss percentages can be as high as 40%, and leaf shrinkage can be up to 20%. This level of change in basis seriously compromises the MRE when not corrected for. Using our formula and the reported average literature values of changes in leaf mass (21%) and leaf shrinkage (11%) during senescence, we calculated that the average RRE for nitrogen and phosphorous of terrestrial plants is 6% (leaf area) to 10% (leaf mass) higher than the 50%, respectively 52% as reported by Aerts (1996). This implies that nutrient resorption from senescing leaves is even more important for nutrient retention in terrestrial plants than thought so far. We advocate that preselecting leaves and monitoring the measurement basis throughout the duration of the experiment should minimize the difference between MRE and RRE. [ABSTRACT FROM AUTHOR]