1. Microbiota and Metabolomic Patterns in the Breast Milk of Subjects with Celiac Disease on a Gluten-Free Diet
- Author
-
Brian Fanelli, Ali R. Zomorrodi, Jacopo Troisi, Maureen M. Leonard, Katherine L Olshan, Nayeim Khan, Victoria Kenyon, Alessio Fasano, and Meritxell Pujolassos
- Subjects
0301 basic medicine ,Adult ,Glutens ,breast milk microbiome ,Breast milk ,Biology ,Article ,03 medical and health sciences ,Diet, Gluten-Free ,0302 clinical medicine ,Metabolomics ,Genetic predisposition ,Metabolome ,Humans ,TX341-641 ,Microbiome ,Prospective Studies ,chemistry.chemical_classification ,Nutrition and Dietetics ,Milk, Human ,Nutrition. Foods and food supply ,Microbiota ,Infant, Newborn ,Gluten ,030104 developmental biology ,Cross-Sectional Studies ,chemistry ,multi-omics analysis ,Case-Control Studies ,Immunology ,030211 gastroenterology & hepatology ,Gluten free ,Female ,Metagenomics ,Rothia mucilaginosa ,celiac disease ,Food Science - Abstract
The intestinal microbiome may trigger celiac disease (CD) in individuals with a genetic disposition when exposed to dietary gluten. Research demonstrates that nutrition during infancy is crucial to the intestinal microbiome engraftment. Very few studies to date have focused on the breast milk composition of subjects with a history of CD on a gluten-free diet. Here, we utilize a multi-omics approach with shotgun metagenomics to analyze the breast milk microbiome integrated with metabolome profiling of 36 subjects, 20 with CD on a gluten-free diet and 16 healthy controls. These analyses identified significant differences in bacterial and viral species/strains and functional pathways but no difference in metabolite abundance. Specifically, three bacterial strains with increased abundance were identified in subjects with CD on a gluten-free diet of which one (Rothia mucilaginosa) has been previously linked to autoimmune conditions. We also identified five pathways with increased abundance in subjects with CD on a gluten-free diet. We additionally found four bacterial and two viral species/strains with increased abundance in healthy controls. Overall, the differences observed in bacterial and viral species/strains and in functional pathways observed in our analysis may influence microbiome engraftment in neonates, which may impact their future clinical outcomes.
- Published
- 2021
- Full Text
- View/download PDF