Search

Your search keyword '"Nakamura Y"' showing total 835 results
Start Over Author "Nakamura Y" Journal nucleic acids research
835 results on '"Nakamura Y"'

2. The RIKEN integrated database of mammals

Author

Masuya, H., primary, Makita, Y., additional, Kobayashi, N., additional, Nishikata, K., additional, Yoshida, Y., additional, Mochizuki, Y., additional, Doi, K., additional, Takatsuki, T., additional, Waki, K., additional, Tanaka, N., additional, Ishii, M., additional, Matsushima, A., additional, Takahashi, S., additional, Hijikata, A., additional, Kozaki, K., additional, Furuichi, T., additional, Kawaji, H., additional, Wakana, S., additional, Nakamura, Y., additional, Yoshiki, A., additional, Murata, T., additional, Fukami-Kobayashi, K., additional, Mohan, S., additional, Ohara, O., additional, Hayashizaki, Y., additional, Mizoguchi, R., additional, Obata, Y., additional, and Toyoda, T., additional

Published
2010
Full Text
View/download PDF

3. DDBJ progress report

Author

Kaminuma, E., primary, Kosuge, T., additional, Kodama, Y., additional, Aono, H., additional, Mashima, J., additional, Gojobori, T., additional, Sugawara, H., additional, Ogasawara, O., additional, Takagi, T., additional, Okubo, K., additional, and Nakamura, Y., additional

Published
2010
Full Text
View/download PDF

4. NBRP databases: databases of biological resources in Japan

Author

Yamazaki, Y., primary, Akashi, R., additional, Banno, Y., additional, Endo, T., additional, Ezura, H., additional, Fukami-Kobayashi, K., additional, Inaba, K., additional, Isa, T., additional, Kamei, K., additional, Kasai, F., additional, Kobayashi, M., additional, Kurata, N., additional, Kusaba, M., additional, Matuzawa, T., additional, Mitani, S., additional, Nakamura, T., additional, Nakamura, Y., additional, Nakatsuji, N., additional, Naruse, K., additional, Niki, H., additional, Nitasaka, E., additional, Obata, Y., additional, Okamoto, H., additional, Okuma, M., additional, Sato, K., additional, Serikawa, T., additional, Shiroishi, T., additional, Sugawara, H., additional, Urushibara, H., additional, Yamamoto, M., additional, Yaoita, Y., additional, Yoshiki, A., additional, and Kohara, Y., additional

Published
2009
Full Text
View/download PDF

21. HUNT: launch of a full-length cDNA database from the Helix Research Institute.

Author

Yudate, H T, Suwa, M, Irie, R, Matsui, H, Nishikawa, T, Nakamura, Y, Yamaguchi, D, Peng, Z Z, Yamamoto, T, Nagai, K, Hayashi, K, Otsuki, T, Sugiyama, T, Ota, T, Suzuki, Y, Sugano, S, Isogai, T, and Masuho, Y

Abstract

The Helix Research Institute (HRI) in Japan is releasing 4356 HUman Novel Transcripts and related information in the newly established HUNT database. The institute is a joint research project principally funded by the Japanese Ministry of International Trade and Industry, and the clones were sequenced in the governmental New Energy and Industrial Technology Development Organization (NEDO) Human cDNA Sequencing Project. The HUNT database contains an extensive amount of annotation from advanced analysis and represents an essential bioinformatics contribution towards understanding of the gene function. The HRI human cDNA clones were obtained from full-length enriched cDNA libraries constructed with the oligo-capping method and have resulted in novel full-length cDNA sequences. A large fraction has little similarity to any proteins of known function and to obtain clues about possible function we have developed original analysis procedures. Any putative function deduced here can be validated or refuted by complementary analysis results. The user can also extract information from specific categories like PROSITE patterns, PFAM domains, PSORT localization, transmembrane helices and clones with GENIUS structure assignments. The HUNT database can be accessed at http://www.hri.co.jp/HUNT.

Published
2001
Full Text
View/download PDF

22. Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis.

Author

Takami, H, Nakasone, K, Takaki, Y, Maeno, G, Sasaki, R, Masui, N, Fuji, F, Hirama, C, Nakamura, Y, Ogasawara, N, Kuhara, S, and Horikoshi, K

Abstract

The 4 202 353 bp genome of the alkaliphilic bacterium Bacillus halodurans C-125 contains 4066 predicted protein coding sequences (CDSs), 2141 (52.7%) of which have functional assignments, 1182 (29%) of which are conserved CDSs with unknown function and 743 (18. 3%) of which have no match to any protein database. Among the total CDSs, 8.8% match sequences of proteins found only in Bacillus subtilis and 66.7% are widely conserved in comparison with the proteins of various organisms, including B.subtilis. The B. halodurans genome contains 112 transposase genes, indicating that transposases have played an important evolutionary role in horizontal gene transfer and also in internal genetic rearrangement in the genome. Strain C-125 lacks some of the necessary genes for competence, such as comS, srfA and rapC, supporting the fact that competence has not been demonstrated experimentally in C-125. There is no paralog of tupA, encoding teichuronopeptide, which contributes to alkaliphily, in the C-125 genome and an ortholog of tupA cannot be found in the B.subtilis genome. Out of 11 sigma factors which belong to the extracytoplasmic function family, 10 are unique to B. halodurans, suggesting that they may have a role in the special mechanism of adaptation to an alkaline environment.

Published
2000
Full Text
View/download PDF

Catalog

Books, media, physical & digital resources
See catalog results