7 results on '"Laibe, Camille"'
Search Results
2. Identifiers.org and MIRIAM Registry: community resources to provide persistent identification
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Juty, Nick, Le Novère, Nicolas, and Laibe, Camille
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- 2012
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3. BioModels: expanding horizons to include more modelling approaches and formats
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Glont, Mihai, primary, Nguyen, Tung V N, additional, Graesslin, Martin, additional, Hälke, Robert, additional, Ali, Raza, additional, Schramm, Jochen, additional, Wimalaratne, Sarala M, additional, Kothamachu, Varun B, additional, Rodriguez, Nicolas, additional, Swat, Maciej J, additional, Eils, Jurgen, additional, Eils, Roland, additional, Laibe, Camille, additional, Malik-Sheriff, Rahuman S, additional, Chelliah, Vijayalakshmi, additional, Le Novère, Nicolas, additional, and Hermjakob, Henning, additional
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- 2017
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4. Tools and data services registry: a community effort to document bioinformatics resources
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Ison, Jon, primary, Rapacki, Kristoffer, additional, Ménager, Hervé, additional, Kalaš, Matúš, additional, Rydza, Emil, additional, Chmura, Piotr, additional, Anthon, Christian, additional, Beard, Niall, additional, Berka, Karel, additional, Bolser, Dan, additional, Booth, Tim, additional, Bretaudeau, Anthony, additional, Brezovsky, Jan, additional, Casadio, Rita, additional, Cesareni, Gianni, additional, Coppens, Frederik, additional, Cornell, Michael, additional, Cuccuru, Gianmauro, additional, Davidsen, Kristian, additional, Vedova, Gianluca Della, additional, Dogan, Tunca, additional, Doppelt-Azeroual, Olivia, additional, Emery, Laura, additional, Gasteiger, Elisabeth, additional, Gatter, Thomas, additional, Goldberg, Tatyana, additional, Grosjean, Marie, additional, Grüning, Björn, additional, Helmer-Citterich, Manuela, additional, Ienasescu, Hans, additional, Ioannidis, Vassilios, additional, Jespersen, Martin Closter, additional, Jimenez, Rafael, additional, Juty, Nick, additional, Juvan, Peter, additional, Koch, Maximilian, additional, Laibe, Camille, additional, Li, Jing-Woei, additional, Licata, Luana, additional, Mareuil, Fabien, additional, Mičetić, Ivan, additional, Friborg, Rune Møllegaard, additional, Moretti, Sebastien, additional, Morris, Chris, additional, Möller, Steffen, additional, Nenadic, Aleksandra, additional, Peterson, Hedi, additional, Profiti, Giuseppe, additional, Rice, Peter, additional, Romano, Paolo, additional, Roncaglia, Paola, additional, Saidi, Rabie, additional, Schafferhans, Andrea, additional, Schwämmle, Veit, additional, Smith, Callum, additional, Sperotto, Maria Maddalena, additional, Stockinger, Heinz, additional, Vařeková, Radka Svobodová, additional, Tosatto, Silvio C.E., additional, de la Torre, Victor, additional, Uva, Paolo, additional, Via, Allegra, additional, Yachdav, Guy, additional, Zambelli, Federico, additional, Vriend, Gert, additional, Rost, Burkhard, additional, Parkinson, Helen, additional, Løngreen, Peter, additional, and Brunak, Søren, additional
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- 2015
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5. BioModels: ten-year anniversary
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Chelliah, Vijayalakshmi, primary, Juty, Nick, additional, Ajmera, Ishan, additional, Ali, Raza, additional, Dumousseau, Marine, additional, Glont, Mihai, additional, Hucka, Michael, additional, Jalowicki, Gaël, additional, Keating, Sarah, additional, Knight-Schrijver, Vincent, additional, Lloret-Villas, Audald, additional, Natarajan, Kedar Nath, additional, Pettit, Jean-Baptiste, additional, Rodriguez, Nicolas, additional, Schubert, Michael, additional, Wimalaratne, Sarala M., additional, Zhao, Yangyang, additional, Hermjakob, Henning, additional, Le Novère, Nicolas, additional, and Laibe, Camille, additional
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- 2014
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6. Tools and data services registry: a community effort to document bioinformatics resources
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Callum Smith, Paolo Uva, Thomas Gatter, Peter Løngreen, Peter Juvan, Hans Ienasescu, Giuseppe Profiti, Aleksandra Nenadic, Kristoffer Rapacki, Chris Morris, Paola Roncaglia, Steffen Möller, Laura Emery, Søren Brunak, Maria Maddalena Sperotto, Heinz Stockinger, Kristian Davidsen, Federico Zambelli, Helen Parkinson, Olivia Doppelt-Azeroual, Luana Licata, Tatyana Goldberg, Andrea Schafferhans, Elisabeth Gasteiger, Emil Karol Rydza, Camille Laibe, Victor De La Torre, Marie Grosjean, Manuela Helmer-Citterich, Hervé Ménager, Radka Svobodová Vařeková, Rafael C. Jimenez, Martin Closter Jespersen, Anthony Bretaudeau, Jan Brezovsky, Tunca Doğan, Matúš Kalaš, Peter M. Rice, Ivan Mičetić, Rune Møllegaard Friborg, Maximilian Koch, Silvio C. E. Tosatto, Nick Juty, Björn Grüning, Gianmauro Cuccuru, Frederik Coppens, Gianni Cesareni, Jon Ison, Rabie Saidi, Sébastien Moretti, Rita Casadio, Gert Vriend, Guy Yachdav, Niall Beard, Timothy F. Booth, Michael Cornell, Piotr Jaroslaw Chmura, Veit Schwämmle, Karel Berka, Dan Bolser, Vassilios Ioannidis, Jing-Woei Li, Burkhard Rost, Gianluca Della Vedova, Fabien Mareuil, Hedi Peterson, Allegra Via, Paolo Romano, Christian Anthon, Technical University of Denmark [Lyngby] (DTU), Institut Pasteur de Madagascar, Réseau International des Instituts Pasteur (RIIP), University of Bergen (UIB), University of Copenhagen = Københavns Universitet (KU), University of Manchester, Palacky University, European Bioinformatics Institute, NEBC Wallingford, Institut de Génétique, Environnement et Protection des Plantes (IGEPP), Institut National de la Recherche Agronomique (INRA)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-AGROCAMPUS OUEST, Masaryk University, University of Bologna, Università degli Studi di Roma Tor Vergata [Roma], Ghent University [Belgium] (UGENT), Flanders Institute for Biotechnology, CRS4 Bioinformat, Università degli studi di Milano-Bicocca, Swiss Institute of Bioinformatics, Universität Bielefeld = Bielefeld University, Tumor Biology Center, Centre National de la Recherche Scientifique (CNRS), University of Freiburg, University of Ljubljana, The Chinese University of Hong Kong [Hong Kong], Universita degli Studi di Padova, Bioinformatics Research Centre, Université de Lausanne, CCLRC Daresbury Laboratory, Universität zu Lübeck [Lübeck] - University of Lübeck [Lübeck], Universität Rostock, University of Tartu, Imperial College London, IRCCS Azienda Ospedaliera Universitaria Integrata San Martino (IRCCS AOU San Martino), University of Southern Denmark (SDU), WTCHG, Central European Institute of Technology [Brno] (CEITEC), Instituto Nacional de Bioinformática, Sapienza University of Rome (DIAG), Consiglio Nazionale delle Ricerche, University of Milan, Radboud University Nijmegen, Ison, J, Rapacki, K, Ménager, H, Kalaš, M, Rydza, E, Chmura, P, Anthon, C, Beard, N, Berka, K, Bolser, D, Booth, T, Bretaudeau, A, Brezovsky, J, Casadio, R, Cesareni, G, Coppens, F, Cornell, M, Cuccuru, G, Davidsen, K, DELLA VEDOVA, G, Dogan, T, Doppelt Azeroual, O, Emery, L, Gasteiger, E, Gatter, T, Goldberg, T, Grosjean, M, Grüning, B, Helmer Citterich, M, Ienasescu, H, Ioannidis, V, Jespersen, M, Jimenez, R, Juty, N, Juvan, P, Koch, M, Laibe, C, Li, J, Licata, L, Mareuil, F, Mičetić, I, Friborg, R, Moretti, S, Morris, C, Möller, S, Nenadic, A, Peterson, H, Profiti, G, Rice, P, Romano, P, Roncaglia, P, Saidi, R, Schafferhans, A, Schwämmle, V, Smith, C, Sperotto, M, Stockinger, H, Vařeková, R, Tosatto, S, de la Torre, V, Uva, P, Via, A, Yachdav, G, Zambelli, F, Vriend, G, Rost, B, Parkinson, H, Løngreen, P, Brunak, S, University of Bergen (UiB), Palacky University Olomouc, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Masaryk University [Brno] (MUNI), Universiteit Gent = Ghent University [Belgium] (UGENT), Università degli Studi di Milano-Bicocca [Milano] (UNIMIB), Swiss Institute of Bioinformatics [Lausanne] (SIB), Université de Lausanne (UNIL), Universität zu Lübeck [Lübeck], Central European Institute of Technology [Brno] (CEITEC MU), Brno University of Technology [Brno] (BUT), Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome], Danmarks Tekniske Universitet = Technical University of Denmark (DTU), University of Copenhagen = Københavns Universitet (UCPH), Institut National de la Recherche Agronomique (INRA)-Université de Rennes (UR)-AGROCAMPUS OUEST, University of Bologna/Università di Bologna, Universiteit Gent = Ghent University (UGENT), Università degli Studi di Milano-Bicocca = University of Milano-Bicocca (UNIMIB), Université de Lausanne = University of Lausanne (UNIL), Università degli Studi di Padova = University of Padua (Unipd), Universität zu Lübeck = University of Lübeck [Lübeck], Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome] (UNIROMA), Università degli Studi di Milano = University of Milan (UNIMI), Ison, Jon, Rapacki, Kristoffer, Ménager, Hervé, Kalaš, Matúš, Rydza, Emil, Chmura, Piotr, Anthon, Christian, Beard, Niall, Berka, Karel, Bolser, Dan, Booth, Tim, Bretaudeau, Anthony, Brezovsky, Jan, Casadio, Rita, Cesareni, Gianni, Coppens, Frederik, Cornell, Michael, Cuccuru, Gianmauro, Davidsen, Kristian, Vedova, Gianluca Della, Dogan, Tunca, Doppelt-Azeroual, Olivia, Emery, Laura, Gasteiger, Elisabeth, Gatter, Thoma, Goldberg, Tatyana, Grosjean, Marie, Grüning, Björn, Helmer-Citterich, Manuela, Ienasescu, Han, Ioannidis, Vassilio, Jespersen, Martin Closter, Jimenez, Rafael, Juty, Nick, Juvan, Peter, Koch, Maximilian, Laibe, Camille, Li, Jing-Woei, Licata, Luana, Mareuil, Fabien, Mičetić, Ivan, Friborg, Rune Møllegaard, Moretti, Sebastien, Morris, Chri, Möller, Steffen, Nenadic, Aleksandra, Peterson, Hedi, Profiti, Giuseppe, Rice, Peter, Romano, Paolo, Roncaglia, Paola, Saidi, Rabie, Schafferhans, Andrea, Schwämmle, Veit, Smith, Callum, Sperotto, Maria Maddalena, Stockinger, Heinz, Vařeková, Radka Svobodová, Tosatto, Silvio C E, de la Torre, Victor, Uva, Paolo, Via, Allegra, Yachdav, Guy, Zambelli, Federico, Vriend, Gert, Rost, Burkhard, Parkinson, Helen, Løngreen, Peter, and Brunak, Søren
- Subjects
0301 basic medicine ,[SDV]Life Sciences [q-bio] ,registry ,Bioinformatics ,computer.software_genre ,Matematikk og naturvitenskap: 400::Informasjons- og kommunikasjonsvitenskap: 420::Systemutvikling og -arbeid: 426 [VDP] ,Task (project management) ,Documentation ,Data and Information ,Database Issue ,Registries ,bioinformatique ,Data Curation ,base de données ,Settore BIO/11 ,gestion de données ,tool ,SOFTWARE-DEVELOPMENT ,bioinformatics ,ddc ,outil informatique ,Tools and data services registry ,SEQANSWERS ,Web service ,MOLECULAR-BIOLOGY ,Biology ,Ecology and Environment ,03 medical and health sciences ,SDG 3 - Good Health and Well-being ,Genetics ,Implementation ,Dissemination ,Bioinformatikk / Bioinformatics ,Data curation ,bioinformatic ,business.industry ,Computational Biology ,Software ,Software development ,bioinformatics, tools, registry, elixir ,Biology and Life Sciences ,Mathematics and natural scienses: 400::Information and communication science: 420::System development and design: 426 [VDP] ,FRAMEWORK ,ELIXIR ,Settore BIO/18 - Genetica ,030104 developmental biology ,tools ,Data as a service ,COMPILATION ,business ,COLLECTION ,Nanomedicine Radboud Institute for Molecular Life Sciences [Radboudumc 19] ,computer ,WEB SERVICES ,LIFE SCIENCES - Abstract
Contains fulltext : 171819.pdf (Publisher’s version ) (Open Access) Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand.Here we present a community-driven curation effort, supported by ELIXIR-the European infrastructure for biological information-that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners.As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools.
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7. BioModels: expanding horizons to include more modelling approaches and formats.
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Glont M, Nguyen TVN, Graesslin M, Hälke R, Ali R, Schramm J, Wimalaratne SM, Kothamachu VB, Rodriguez N, Swat MJ, Eils J, Eils R, Laibe C, Malik-Sheriff RS, Chelliah V, Le Novère N, and Hermjakob H
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- Data Collection, Internet, User-Computer Interface, Data Curation methods, Models, Biological, Software
- Abstract
BioModels serves as a central repository of mathematical models representing biological processes. It offers a platform to make mathematical models easily shareable across the systems modelling community, thereby supporting model reuse. To facilitate hosting a broader range of model formats derived from diverse modelling approaches and tools, a new infrastructure for BioModels has been developed that is available at http://www.ebi.ac.uk/biomodels. This new system allows submitting and sharing of a wide range of models with improved support for formats other than SBML. It also offers a version-control backed environment in which authors and curators can work collaboratively to curate models. This article summarises the features available in the current system and discusses the potential benefit they offer to the users over the previous system. In summary, the new portal broadens the scope of models accepted in BioModels and supports collaborative model curation which is crucial for model reproducibility and sharing., (© The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.)
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- 2018
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