1. A GWAS meta-analysis from 5 population-based cohorts implicates ion channel genes in the pathogenesis of irritable bowel syndrome
- Author
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Natalia V. Rivera, Tim Kacprowski, Pirro G. Hysi, Ferdinando Bonfiglio, Jukka Ronkainen, Fatemeh Hadizadeh, Georg Homuth, María Carmen Cenit, Minna Männikkö, Mauro D'Amato, Weronica E. Ek, Cisca Wijmenga, Maria Henström, Abhishek Nag, Ettje F. Tigchelaar, Ville Karhunen, Frances M K Williams, Joseph Rafter, Luis Bujanda, Anna Reznichenko, Tenghao Zheng, Alexandra Zhernakova, Ali A. Aghdassi, Groningen Institute for Gastro Intestinal Genetics and Immunology (3GI), and Translational Immunology Groningen (TRIGR)
- Subjects
0301 basic medicine ,EXPRESSION ,Physiology ,Population ,SNP ,Genome-wide association study ,GASTROINTESTINAL DISORDERS ,Computational biology ,Biology ,BRUGADA-SYNDROME ,Ion Channels ,TRP CHANNELS ,Irritable Bowel Syndrome ,03 medical and health sciences ,Gene mapping ,QUALITY-CONTROL ,IBS ,medicine ,Genetic predisposition ,Humans ,GWAS ,Genetic Predisposition to Disease ,genetics ,GENOME-WIDE ASSOCIATION ,education ,Irritable bowel syndrome ,POLYMORPHISMS ,Genetic association ,education.field_of_study ,Endocrine and Autonomic Systems ,Gastroenterology ,medicine.disease ,FUNCTIONAL GI DISORDERS ,meta-analysis ,030104 developmental biology ,Meta-analysis ,Genome-Wide Association Study ,SWEDISH TWIN REGISTRY - Abstract
BackgroundIrritable bowel syndrome (IBS) shows genetic predisposition, however, large-scale, powered gene mapping studies are lacking. We sought to exploit existing genetic (genotype) and epidemiological (questionnaire) data from a series of population-based cohorts for IBS genome-wide association studies (GWAS) and their meta-analysis.MethodsBased on questionnaire data compatible with Rome III Criteria, we identified a total of 1335 IBS cases and 9768 asymptomatic individuals from 5 independent European genotyped cohorts. Individual GWAS were carried out with sex-adjusted logistic regression under an additive model, followed by meta-analysis using the inverse variance method. Functional annotation of significant results was obtained via a computational pipeline exploiting ontology and interaction networks, and tissue-specific and gene set enrichment analyses.Key ResultsSuggestive GWAS signals (P5.0x10(-6)) were detected for 7 genomic regions, harboring 64 gene candidates to affect IBS risk via functional or expression changes. Functional annotation of this gene set convincingly (best FDR-corrected P=3.1x10(-10)) highlighted regulation of ion channel activity as the most plausible pathway affecting IBS risk.Conclusion & InferencesOur results confirm the feasibility of population-based studies for gene-discovery efforts in IBS, identify risk genes and loci to be prioritized in independent follow-ups, and pinpoint ion channels as important players and potential therapeutic targets warranting further investigation.
- Published
- 2018