99 results on '"ZHAO, K."'
Search Results
2. New diluted ferromagnetic semiconductor with Curie temperature up to 180 K and isostructural to the ‘122’ iron-based superconductors
- Author
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Zhao, K., primary, Deng, Z., additional, Wang, X. C., additional, Han, W., additional, Zhu, J. L., additional, Li, X., additional, Liu, Q. Q., additional, Yu, R. C., additional, Goko, T., additional, Frandsen, B., additional, Liu, Lian, additional, Ning, Fanlong, additional, Uemura, Y. J., additional, Dabkowska, H., additional, Luke, G. M., additional, Luetkens, H., additional, Morenzoni, E., additional, Dunsiger, S. R., additional, Senyshyn, A., additional, Böni, P., additional, and Jin, C. Q., additional
- Published
- 2013
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3. New diluted ferromagnetic semiconductor with Curie temperature up to 180?K and isostructural to the '122' iron-based superconductors.
- Author
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Zhao, K., Deng, Z., Wang, X. C., Han, W., Zhu, J. L., Li, X., Liu, Q. Q., Yu, R. C., Goko, T., Frandsen, B., Liu, Lian, Ning, Fanlong, Uemura, Y. J., Dabkowska, H., Luke, G. M., Luetkens, H., Morenzoni, E., Dunsiger, S. R., Senyshyn, A., and Böni, P.
- Abstract
Diluted magnetic semiconductors have received much attention due to their potential applications for spintronics devices. A prototypical system (Ga,Mn)As has been widely studied since the 1990s. The simultaneous spin and charge doping via hetero-valent (Ga
3+ ,Mn2+ ) substitution, however, resulted in severely limited solubility without availability of bulk specimens. Here we report the synthesis of a new diluted magnetic semiconductor (Ba1?x Kx )(Zn1?y Mny )2 As2 , which is isostructural to the 122 iron-based superconductors with the tetragonal ThCr2 Si2 (122) structure. Holes are doped via (Ba2+ , K1+ ) replacements, while spins via isovalent (Zn2+ ,Mn2+ ) substitutions. Bulk samples with x=0.1?0.3 and y=0.05?0.15 exhibit ferromagnetic order with TC up to 180?K, which is comparable to the highest TC for (Ga,Mn)As and significantly enhanced from TC up to 50?K of the '111'-based Li(Zn,Mn)As. Moreover, ferromagnetic (Ba,K)(Zn,Mn)2 As2 shares the same 122 crystal structure with semiconducting BaZn2 As2 , antiferromagnetic BaMn2 As2 and superconducting (Ba,K)Fe2 As2 , which makes them promising for the development of multilayer functional devices. [ABSTRACT FROM AUTHOR]- Published
- 2013
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4. A core-shell fiber moisture-driven electric generator enabled by synergetic complex coacervation and built-in potential.
- Author
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Zan G, Jiang W, Kim H, Zhao K, Li S, Lee K, Jang J, Kim G, Shin E, Kim W, Oh JW, Kim Y, Park JW, Kim T, Lee S, Oh JH, Shin J, Kim HJ, and Park C
- Abstract
Moisture-driven electricity generators (MEGs) have been extensively researched; however, high-performance flexible variants have seldom been demonstrated. Here we present a novel complex coacervation with built-in potential strategy for developing a high-performance uniaxial MEG, featuring a core of poly(3,4-ethylenedioxythiophene) (PEDOT) with a built-in charge potential and a gel shell composed of poly(diallyldimethylammonium chloride) (PDDA) and sodium alginate (NaAlg) coacervate. The complex coacervation of two oppositely charged polyelectrolytes produces extra mobile carriers and free volume in the device; meanwhile, the PEDOT core's surface charge significantly accelerates carrier diffusion. Consequently, the uniaxial fiber-based MEG demonstrates breakthrough performance, achieving an output voltage of up to 0.8 V, a maximum current density of 1.05 mA/cm
2 , and a power density of 184 μW/cm2 at 20% relative humidity. Moreover, the mechanical robustness is ensured for the PEDOT nanoribbon substrate without performance degradation even after 100,000 folding cycles, making it suitable for self-powered human interactive sensor and synapse. Notably, we have constructed the inaugural MEG-synapse self-powered device, with a fiber-based MEG successfully operating a synaptic memristor, thereby emulating autonomous human synapses linked with fibrous neurons. Overall, this work pioneers innovative design strategies and application scenarios for high-performance MEGs., Competing Interests: Competing interests: The authors declare no competing interests., (© 2024. The Author(s).)- Published
- 2024
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5. Anomalous scaling of branching tidal networks in global coastal wetlands and mudflats.
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Xu F, Zhou Z, Fagherazzi S, D'Alpaos A, Townend I, Zhao K, Xie W, Guo L, Wang X, Peng Z, Yang Z, Chen C, Cheng G, Xu Y, and He Q
- Abstract
Branching networks are key elements in natural landscapes and have attracted sustained research interest across the geosciences and numerous intersecting fields. The prevailing consensus has long held that branching networks are optimized and exhibit fractal properties adhering to power-law scaling relationships. However, tidal networks in coastal wetlands and mudflats exhibit scaling properties that defy conventional power-law descriptions, presenting a longstanding enigma. Here we show that the observed atypical scaling represents a universal deviation from an ideal fractal branching network capable of fully occupying the available space. Using satellite imagery of tidal networks from diverse global locations, we identified an inherent "laziness" in this deviation-where the increased ease of channel formation paradoxically decreases the space-filling efficiency of the network. We developed a theoretical model that reproduces the ideal fractal branching network and the laziness phenomenon. The model suggests that branching networks can emerge under a localized competition principle without adhering to conventionally assumed optimization-driven processes. These results reveal the dual nature of branching networks, where "laziness" complements the well-known optimization process. This property provides more flexible strategies for controlling tidal network morphogenesis, with implications for coastal management, wetland restoration, and studies in fluvial and planetary systems., (© 2024. The Author(s).)
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- 2024
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6. Micro-homogeneity of lateral energy landscapes governs the performance in perovskite solar cells.
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Shi P, Ding B, Jin D, Oner M, Zhang X, Tian Y, Li Y, Zhao K, Sun Z, Xu J, Zhang S, Lai R, Xiao L, Wang C, Değer C, Tian L, Shen J, Cheng Y, Yavuz I, Miao X, Shi E, Yang D, Ding Y, Nazeeruddin MK, Wang R, and Xue J
- Abstract
Suppression of energy disorders in the vertical direction of a photovoltaic device, along which charge carriers are forced to travel, has been extensively studied to reduce unproductive charge recombination and thus achieve high-efficiency perovskite solar cells. In contrast, energy disorders in the lateral direction of the junction for large-area modules are largely overlooked. Herein, we show that the micro-inhomogeneity characteristics in the surface lateral energetics of formamidinium (FA)-based perovskite films also significantly influence the device performance, particularly with accounting for the stability and scale-up aspects of the devices. By using organic amidinium passivators, instead of the most commonly used organic ammonium ones, the micro-inhomogeneity in the lateral energy landscapes can be suppressed, greatly improving device stability and efficiency of FA-based single-junction perovskite solar cells., (© 2024. The Author(s).)
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- 2024
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7. Author Correction: Dual-site segmentally synergistic catalysis mechanism: boosting CoFeS x nanocluster for sustainable water oxidation.
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Xu S, Feng S, Yu Y, Xue D, Liu M, Wang C, Zhao K, Xu B, and Zhang JN
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- 2024
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8. High-capacity, fast-charging and long-life magnesium/black phosphorous composite negative electrode for non-aqueous magnesium battery.
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Zhao Q, Zhao K, Han GF, Huang M, Wang R, Wang Z, Zhou W, Ma Y, Liu J, Wang Z, Xu C, Huang G, Wang J, Pan F, and Baek JB
- Abstract
Secondary non-aqueous magnesium-based batteries are a promising candidate for post-lithium-ion battery technologies. However, the uneven Mg plating behavior at the negative electrode leads to high overpotential and short cycle life. Here, to circumvent these issues, we report the preparation of a magnesium/black phosphorus (Mg@BP) composite and its use as a negative electrode for non-aqueous magnesium-based batteries. Via in situ and ex situ physicochemical measurements, we demonstrate that Mg ions are initially intercalated in black phosphorus two-dimensional structures, forming chemically stable Mg
x P intermediates. After the formation of the intermediates, Mg electrodeposition reaction became the predominant. When tested in the asymmetric coin cell configuration, the Mg@BP composite electrode allowed stable stripping/plating performances for 1600 h (800 cycles), a cumulative capacity of 3200 mAh cm-2 , and a Coulombic efficiency of 99.98%. Assembly and testing of the Mg@BP | |nano-CuS coin cell enabled a discharge capacity of 398 mAh g-1 and an average cell discharge potential of about 1.15 V at a specific current of 560 mA g-1 with a low decay rate of 0.016% per cycle for 225 cycles at 25 °C., (© 2024. The Author(s).)- Published
- 2024
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9. Multi-omics analyzes of Rosa gigantea illuminate tea scent biosynthesis and release mechanisms.
- Author
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Zhou L, Wu S, Chen Y, Huang R, Cheng B, Mao Q, Liu T, Liu Y, Zhao K, Pan H, Yu C, Gao X, Luo L, and Zhang Q
- Subjects
- Gene Regulatory Networks, Genomics methods, Eugenol analogs & derivatives, Eugenol metabolism, Plant Proteins genetics, Plant Proteins metabolism, Pollination, Multiomics, Rosa genetics, Rosa metabolism, Volatile Organic Compounds metabolism, Odorants analysis, Genome, Plant, Gene Expression Regulation, Plant
- Abstract
Rose is an important ornamental crop cultivated globally for perfume production. However, our understanding of the mechanisms underlying scent production and molecular breeding for fragrance is hindered by the lack of a reference genome for tea roses. We present the first complete telomere-to-telomere (T2T) genome of Rosa gigantea, with high quality (QV > 60), including detailed characterization of the structural features of repetitive regions. The expansion of genes associated with phenylpropanoid biosynthesis may account for the unique tea scent. We uncover the release rhythm of aromatic volatile organic compounds and their gene regulatory networks through comparative genomics and time-ordered gene co-expression networks. Analyzes of eugenol homologs demonstrate how plants attract pollinators using specialized phenylpropanoids in specific tissues. This study highlights the conservation and utilization of genetic diversity from wild endangered species through multi-omics approaches, providing a scientific foundation for enhancing rose fragrance via de novo domestication., (© 2024. The Author(s).)
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- 2024
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10. Probing spin hydrodynamics on a superconducting quantum simulator.
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Shi YH, Sun ZH, Wang YY, Wang ZA, Zhang YR, Ma WG, Liu HT, Zhao K, Song JC, Liang GH, Mei ZY, Zhang JC, Li H, Chen CT, Song X, Wang J, Xue G, Yu H, Huang K, Xiang Z, Xu K, Zheng D, and Fan H
- Abstract
Characterizing the nature of hydrodynamical transport properties in quantum dynamics provides valuable insights into the fundamental understanding of exotic non-equilibrium phases of matter. Experimentally simulating infinite-temperature transport on large-scale complex quantum systems is of considerable interest. Here, using a controllable and coherent superconducting quantum simulator, we experimentally realize the analog quantum circuit, which can efficiently prepare the Haar-random states, and probe spin transport at infinite temperature. We observe diffusive spin transport during the unitary evolution of the ladder-type quantum simulator with ergodic dynamics. Moreover, we explore the transport properties of the systems subjected to strong disorder or a tilted potential, revealing signatures of anomalous subdiffusion in accompany with the breakdown of thermalization. Our work demonstrates a scalable method of probing infinite-temperature spin transport on analog quantum simulators, which paves the way to study other intriguing out-of-equilibrium phenomena from the perspective of transport., (© 2024. The Author(s).)
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- 2024
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11. Approaching crystal's limit of thermoelectrics by nano-sintering-aid at grain boundaries.
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Lei J, Zhao K, Liao J, Yang S, Zhang Z, Wei TR, Qiu P, Zhu M, Chen L, and Shi X
- Abstract
Grain boundary plays a vital role in thermoelectric transports, leading to distinct properties between single crystals and polycrystals. Manipulating the grain boundary to realize good thermoelectric properties in polycrystals similar as those of single crystals is a long-standing task, but it is quite challenging. Herein, we develop a liquid-phase sintering strategy to successfully introduce Mg
2 Cu nano-sintering-aid into the grain boundaries of Mg3 (Bi, Sb)2 -based materials. The nano-aid helps to enlarge the average grain size to 23.7 μm and effectively scatter phonons, leading to excellent electrical transports similar as those of single crystals and ultralow lattice thermal conductivity as well as exceptional thermoelectric figure of merit (1.5 at 500 K) and conversion efficiency (7.4% under temperature difference of 207 K). This work provides a simple but effective strategy for the fabrication of high-performance polycrystals for large-scale applications., (© 2024. The Author(s).)- Published
- 2024
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12. Self-powered triboelectric-responsive microneedles with controllable release of optogenetically engineered extracellular vesicles for intervertebral disc degeneration repair.
- Author
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Zhang W, Qin X, Li G, Zhou X, Li H, Wu D, Song Y, Zhao K, Wang K, Feng X, Tan L, Wang B, Sun X, Wen Z, and Yang C
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- Animals, Humans, Phosphoproteins metabolism, Phosphoproteins genetics, Cellular Senescence, Exodeoxyribonucleases metabolism, Exodeoxyribonucleases genetics, Rats, DNA Damage, Mice, Male, Disease Models, Animal, Rats, Sprague-Dawley, Intervertebral Disc Degeneration therapy, Intervertebral Disc Degeneration metabolism, Extracellular Vesicles metabolism, Nucleus Pulposus metabolism, Needles, Optogenetics methods, Optogenetics instrumentation
- Abstract
Excessive exercise is an etiological factor of intervertebral disc degeneration (IVDD). Engineered extracellular vesicles (EVs) exhibit excellent therapeutic potential for disease-modifying treatments. Herein, we fabricate an exercise self-powered triboelectric-responsive microneedle (MN) assay with the sustainable release of optogenetically engineered EVs for IVDD repair. Mechanically, exercise promotes cytosolic DNA sensing-mediated inflammatory activation in senescent nucleus pulposus (NP) cells (the master cell population for IVD homeostasis maintenance), which accelerates IVDD. TREX1 serves as a crucial nuclease, and disassembly of TRAM1-TREX1 complex disrupts the subcellular localization of TREX1, triggering TREX1-dependent genomic DNA damage during NP cell senescence. Optogenetically engineered EVs deliver TRAM1 protein into senescent NP cells, which effectively reconstructs the elimination function of TREX1. Triboelectric nanogenerator (TENG) harvests mechanical energy and triggers the controllable release of engineered EVs. Notably, an optogenetically engineered EV-based targeting treatment strategy is used for the treatment of IVDD, showing promising clinical potential for the treatment of degeneration-associated disorders., (© 2024. The Author(s).)
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- 2024
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13. Acute depletion of BRG1 reveals its primary function as an activator of transcription.
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Ren G, Ku WL, Ge G, Hoffman JA, Kang JY, Tang Q, Cui K, He Y, Guan Y, Gao B, Liu C, Archer TK, and Zhao K
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- Animals, Mice, Nucleosomes metabolism, Nucleosomes genetics, Indoleacetic Acids metabolism, RNA Polymerase II metabolism, Fibroblasts metabolism, Gene Knock-In Techniques, Hepatocytes metabolism, E1A-Associated p300 Protein metabolism, E1A-Associated p300 Protein genetics, Transcriptional Activation, Transcription, Genetic, Histones metabolism, Deoxyribonuclease I metabolism, Chromatin metabolism, Humans, Transcription Factors metabolism, Transcription Factors genetics, DNA Helicases metabolism, DNA Helicases genetics, Nuclear Proteins metabolism, Nuclear Proteins genetics
- Abstract
The mammalian SWI/SNF-like BAF complexes play critical roles during animal development and pathological conditions. Previous gene deletion studies and characterization of human gene mutations implicate that the complexes both repress and activate a large number of genes. However, the direct function of the complexes in cells remains largely unclear due to the relatively long-term nature of gene deletion or natural mutation. Here we generate a mouse line by knocking in the auxin-inducible degron tag (AID) to the Smarca4 gene, which encodes BRG1, the essential ATPase subunit of the BAF complexes. We show that the tagged BRG1 can be efficiently depleted by osTIR1 expression and auxin treatment for 6 to 10 h in CD4 + T cells, hepatocytes, and fibroblasts isolated from the knock-in mice. The acute depletion of BRG1 leads to decreases in nascent RNAs and RNA polymerase II binding at a large number of genes, which are positively correlated with the loss of BRG1. Further, these changes are correlated with diminished accessibility at DNase I Hypersensitive Sites (DHSs) and p300 binding. The acute BRG1 depletion results in three major patterns of nucleosome shifts leading to narrower nucleosome spacing surrounding transcription factor motifs and at enhancers and transcription start sites (TSSs), which are correlated with loss of BRG1, decreased chromatin accessibility and decreased nascent RNAs. Acute depletion of BRG1 severely compromises the Trichostatin A (TSA) -induced histone acetylation, suggesting a substantial interplay between the chromatin remodeling activity of BRG1 and histone acetylation. Our data suggest BRG1 mainly plays a direct positive role in chromatin accessibility, RNAPII binding, and nascent RNA production by regulating nucleosome positioning and facilitating transcription factor binding to their target sites., (© 2024. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.)
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- 2024
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14. Electrochemical-repaired porous graphene membranes for precise ion-ion separation.
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Zhou Z, Zhao K, Chi HY, Shen Y, Song S, Hsu KJ, Chevalier M, Shi W, and Agrawal KV
- Abstract
The preparation of atom-thick porous lattice hosting Å-scale pores is attractive to achieve a large ion-ion selectivity in combination with a large ion flux. Graphene film is an ideal selective layer for this if high-precision pores can be incorporated, however, it is challenging to avoid larger non-selective pores at the tail-end of the pore size distribution which reduces ion-ion selectivity. Herein, we develop a strategy to overcome this challenge using an electrochemical repair strategy that successfully masks larger pores in large-area graphene. 10-nm-thick electropolymerized conjugated microporous polymer (CMP) layer is successfully deposited on graphene, thanks to a strong π-π interaction in these two materials. While the CMP layer itself is not selective, it effectively masks graphene pores, leading to a large Li
+ /Mg2+ selectivity from zero-dimensional pores reaching 300 with a high Li+ ion permeation rate surpassing the performance of reported materials for ion-ion separation. Overall, this scalable repair strategy enables the fabrication of monolayer graphene membranes with customizable pore sizes, limiting the contribution of nonselective pores, and offering graphene membranes a versatile platform for a broad spectrum of challenging separations., (© 2024. The Author(s).)- Published
- 2024
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15. New Late Pleistocene age for the Homo sapiens skeleton from Liujiang southern China.
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Ge J, Xing S, Grün R, Deng C, Jiang Y, Jiang T, Yang S, Zhao K, Gao X, Yang H, Guo Z, Petraglia MD, and Shao Q
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- Humans, China, Caves, Skeleton, History, Ancient, Geologic Sediments, Fossils, Radiometric Dating
- Abstract
The emergence of Homo sapiens in Eastern Asia is a topic of significant research interest. However, well-preserved human fossils in secure, dateable contexts in this region are extremely rare, and often the subject of intense debate owing to stratigraphic and geochronological problems. Tongtianyan cave, in Liujiang District of Liuzhou City, southern China is one of the most important fossils finds of H. sapiens, though its age has been debated, with chronometric dates ranging from the late Middle Pleistocene to the early Late Pleistocene. Here we provide new age estimates and revised provenience information for the Liujiang human fossils, which represent one of the most complete fossil skeletons of H. sapiens in China. U-series dating on the human fossils and radiocarbon and optically stimulated luminescence dating on the fossil-bearing sediments provided ages ranging from ~33,000 to 23,000 years ago (ka). The revised age estimates correspond with the dates of other human fossils in northern China, at Tianyuan Cave (~40.8-38.1 ka) and Zhoukoudian Upper Cave (39.0-36.3 ka), indicating the geographically widespread presence of H. sapiens across Eastern Asia in the Late Pleistocene, which is significant for better understanding human dispersals and adaptations in the region., (© 2024. The Author(s).)
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- 2024
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16. Strain regulates the photovoltaic performance of thick-film perovskites.
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Shi P, Xu J, Yavuz I, Huang T, Tan S, Zhao K, Zhang X, Tian Y, Wang S, Fan W, Li Y, Jin D, Yu X, Wang C, Gao X, Chen Z, Shi E, Chen X, Yang D, Xue J, Yang Y, and Wang R
- Abstract
Perovskite photovoltaics, typically based on a solution-processed perovskite layer with a film thickness of a few hundred nanometres, have emerged as a leading thin-film photovoltaic technology. Nevertheless, many critical issues pose challenges to its commercialization progress, including industrial compatibility, stability, scalability and reliability. A thicker perovskite film on a scale of micrometres could mitigate these issues. However, the efficiencies of thick-film perovskite cells lag behind those with nanometre film thickness. With the mechanism remaining elusive, the community has long been under the impression that the limiting factor lies in the short carrier lifetime as a result of defects. Here, by constructing a perovskite system with extraordinarily long carrier lifetime, we rule out the restrictions of carrier lifetime on the device performance. Through this, we unveil the critical role of the ignored lattice strain in thick films. Our results provide insights into the factors limiting the performance of thick-film perovskite devices., (© 2024. The Author(s).)
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- 2024
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17. Identification of a potent palladium-aryldiphosphine catalytic system for high-performance carbonylation of alkenes.
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Zhao K, Wang H, Li T, Liu S, Benassi E, Li X, Yao Y, Wang X, Cui X, and Shi F
- Abstract
The development of stable and efficient ligands is of vital significance to enhance the catalytic performance of carbonylation reactions of alkenes. Herein, an aryldiphosphine ligand (L11) bearing the [Ph
2 P(ortho-C6 H4 )]2 CH2 skeleton is reported for palladium-catalyzed regioselective carbonylation of alkenes. Compared with the industrially successful Pd/1,2-bis(di-tert-butylphosphinomethyl)benzene catalyst, catalytic efficiency catalyzed by Pd/L11 on methoxycarbonylation of ethylene is obtained, exhibiting better catalytic performance (TON: >2,390,000; TOF: 100,000 h-1 ; selectivity: >99%) and stronger oxygen-resistance stability. Moreover, a substrate compatibility (122 examples) including chiral and bioactive alkenes or alcohols is achieved with up to 99% yield and 99% regioselectivity. Experimental and computational investigations show that the appropriate bite angle of aryldiphosphine ligand and the favorable interaction of 1,4-dioxane with Pd/L11 synergistically contribute to high activity and selectivity while the electron deficient phosphines originated from electron delocalization endow L11 with excellent oxygen-resistance stability., (© 2024. The Author(s).)- Published
- 2024
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18. Dual-site segmentally synergistic catalysis mechanism: boosting CoFeS x nanocluster for sustainable water oxidation.
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Xu S, Feng S, Yu Y, Xue D, Liu M, Wang C, Zhao K, Xu B, and Zhang JN
- Abstract
Efficient oxygen evolution reaction electrocatalysts are essential for sustainable clean energy conversion. However, catalytic materials followed the conventional adsorbate evolution mechanism (AEM) with the inherent scaling relationship between key oxygen intermediates *OOH and *OH, or the lattice-oxygen-mediated mechanism (LOM) with the possible lattice oxygen migration and structural reconstruction, which are not favorable to the balance between high activity and stability. Herein, we propose an unconventional Co-Fe dual-site segmentally synergistic mechanism (DSSM) for single-domain ferromagnetic catalyst CoFeS
x nanoclusters on carbon nanotubes (CNT) (CFS-ACs/CNT), which can effectively break the scaling relationship without sacrificing stability. Co3+ (L.S, t2g 6 eg 0 ) supplies the strongest OH* adsorption energy, while Fe3+ (M.S, t2g 4 eg 1 ) exposes strong O* adsorption. These dual-sites synergistically produce of Co-O-O-Fe intermediates, thereby accelerating the release of triplet-state oxygen ( ↑ O = O ↑ ). As predicted, the prepared CFS-ACs/CNT catalyst exhibits less overpotential than that of commercial IrO2 , as well as approximately 633 h of stability without significant potential loss., (© 2024. The Author(s).)- Published
- 2024
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19. Integrating hydrogen utilization in CO 2 electrolysis with reduced energy loss.
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Jiang X, Ke L, Zhao K, Yan X, Wang H, Cao X, Liu Y, Li L, Sun Y, Wang Z, Dang D, and Yan N
- Abstract
Electrochemical carbon dioxide reduction reaction using sustainable energy is a promising approach of synthesizing chemicals and fuels, yet is highly energy intensive. The oxygen evolution reaction is particularly problematic, which is kinetically sluggish and causes anodic carbon loss. In this context, we couple CO
2 electrolysis with hydrogen oxidation reaction in a single electrochemical cell. A Ni(OH)2 /NiOOH mediator is used to fully suppress the anodic carbon loss and hydrogen oxidation catalyst poisoning by migrated reaction products. This cell is highly flexible in producing either gaseous (CO) or soluble (formate) products with high selectivity (up to 95.3%) and stability (>100 h) at voltages below 0.9 V (50 mA cm-2 ). Importantly, thanks to the "transferred" oxygen evolution reaction to a water electrolyzer with thermodynamically and kinetically favored reaction conditions, the total polarization loss and energy consumption of our H2 -integrated CO2 reduction reaction, including those for hydrogen generation, are reduced up to 22% and 42%, respectively. This work demonstrates the opportunity of combining CO2 electrolysis with the hydrogen economy, paving the way to the possible integration of various emerging energy conversion and storage approaches for improved energy/cost effectiveness., (© 2024. The Author(s).)- Published
- 2024
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20. Effect of trade on global aquatic food consumption patterns.
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Zhao K, Gaines SD, García Molinos J, Zhang M, and Xu J
- Subjects
- Humans, Diet, Food, Dietary Patterns, Fisheries, Aquaculture
- Abstract
Globalization of fishery products is playing a significant role in shaping the harvesting and use of aquatic foods, but a vigorous debate has focused on whether the trade is a driver of the inequitable distribution of aquatic foods. Here, we develop species-level mass balance and trophic level identification datasets for 174 countries and territories to analyze global aquatic food consumption patterns, trade characteristics, and impacts from 1976 to 2019. We find that per capita consumption of aquatic foods has increased significantly at the global scale, but the human aquatic food trophic level (HATL), i.e., the average trophic level of aquatic food items in the human diet, is declining (from 3.42 to 3.18) because of the considerable increase in low-trophic level aquaculture species output relative to that of capture fisheries since 1976. Moreover, our study finds that trade has contributed to increasing the availability and trophic level of aquatic foods in >60% of the world's countries. Trade has also reduced geographic differences in the HATL among countries over recent decades. We suggest that there are important opportunities to widen the current focus on productivity gains and economic outputs to a more equitable global distribution of aquatic foods., (© 2024. The Author(s).)
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- 2024
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21. Modeling critical thermoelectric transports driven by band broadening and phonon softening.
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Zhao K, Yue Z, Wuliji H, Chen H, Deng T, Lei J, Qiu P, Chen L, and Shi X
- Abstract
Critical phenomena are one of the most captivating areas of modern physics, whereas the relevant experimental and theoretical studies are still very challenging. Particularly, the underlying mechanism behind the anomalous thermoelectric properties during critical phase transitions remains elusive, i.e., the current theoretical models for critical electrical transports are either qualitative or solely focused on a specific transport parameter. Herein, we develop a quantitative theory to model the electrical transports during critical phase transitions by incorporating both the band broadening effect and carrier-soft TO phonon interactions. It is found that the band-broadening effect contributes an additional term to Seebeck coefficient, while the carrier-soft TO phonon interactions greatly affects both electrical resistivity and Seebeck coefficient. The universality and validity of our model are well confirmed by experimental data. Furthermore, the features of critical phase transitions are effectively tuned. For example, alloying S in Cu
2 Se can reduce the phase transition temperature but increase the phase transition parameter b. The maximum thermoelectric figure of merit zT is pushed to a high value of 1.3 at the critical point (377 K), which is at least twice as large as those of normal static phases. This work not only provides a clear picture of the critical electrical transports but also presents new guidelines for future studies in this exciting area., (© 2024. The Author(s).)- Published
- 2024
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22. Modulation of the morphotropic phase boundary for high-performance ductile thermoelectric materials.
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Liang J, Liu J, Qiu P, Ming C, Zhou Z, Gao Z, Zhao K, Chen L, and Shi X
- Abstract
The flexible thermoelectric technique, which can convert heat from the human body to electricity via the Seebeck effect, is expected to provide a peerless solution for the power supply of wearables. The recent discovery of ductile semiconductors has opened a new avenue for flexible thermoelectric technology, but their power factor and figure-of-merit values are still much lower than those of classic thermoelectric materials. Herein, we demonstrate the presence of morphotropic phase boundary in Ag
2 Se-Ag2 S pseudobinary compounds. The morphotropic phase boundary can be freely tuned by adjusting the material thermal treatment processes. High-performance ductile thermoelectric materials with excellent power factor (22 μWcm-1 K-2 ) and figure-of-merit (0.61) values are realized near the morphotropic phase boundary at 300 K. These materials perform better than all existing ductile inorganic semiconductors and organic materials. Furthermore, the in-plane flexible thermoelectric device based on these high-performance thermoelectric materials demonstrates a normalized maximum power density reaching 0.26 Wm-1 under a temperature gradient of 20 K, which is at least two orders of magnitude higher than those of flexible organic thermoelectric devices. This work can greatly accelerate the development of flexible thermoelectric technology., (© 2023. The Author(s).)- Published
- 2023
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23. Acetylation is required for full activation of the NLRP3 inflammasome.
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Zhang Y, Luo L, Xu X, Wu J, Wang F, Lu Y, Zhang N, Ding Y, Lu B, and Zhao K
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- Mice, Animals, Acetylation, Macrophages metabolism, Protein Processing, Post-Translational, Inflammasomes metabolism, NLR Family, Pyrin Domain-Containing 3 Protein metabolism
- Abstract
Full activation of the NLRP3 inflammasome needs two sequential signals: a priming signal, followed by a second, assembly signal. Several studies have shown that the two signals trigger post-translational modification (PTM) of NLRP3, affecting activity of the inflammasome, however, the PTMs induced by the second signal are less well characterized. Here, we show that the assembly signal involves acetylation of NLRP3 at lysine 24, which is important for the oligomerization and the actual assembly of NLRP3 without affecting its recruitment to dispersed trans-Golgi network (dTGN). Accordingly, NLRP3 inflammasome activation is impaired in NLRP3-K24R knock-in mice. We identify KAT5 as an acetyltransferase able to acetylate NLRP3. KAT5 deficiency in myeloid cells and pharmacological inhibition of KAT5 enzymatic activity reduce activation of the NLRP3 inflammasome, both in vitro and in vivo. Thus, our study reveals a key mechanism for the oligomerization and full activation of NLRP3 and lays down the proof of principle for therapeutic targeting of the KAT5-NLRP3 axis., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
24. Asynchronous domain dynamics and equilibration in layered oxide battery cathode.
- Author
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Xue Z, Sharma N, Wu F, Pianetta P, Lin F, Li L, Zhao K, and Liu Y
- Abstract
To improve lithium-ion battery technology, it is essential to probe and comprehend the microscopic dynamic processes that occur in a real-world composite electrode under operating conditions. The primary and secondary particles are the structural building blocks of battery cathode electrodes. Their dynamic inconsistency has profound but not well-understood impacts. In this research, we combine operando coherent multi-crystal diffraction and optical microscopy to examine the chemical dynamics in local domains of layered oxide cathode. Our results not only pinpoint the asynchronicity of the lithium (de)intercalation at the sub-particle level, but also reveal sophisticated diffusion kinetics and reaction patterns, involving various localized processes, e.g., chemical onset, reaction front propagation, domains equilibration, particle deformation and motion. These observations shed new lights onto the activation and degradation mechanisms of state-of-the-art battery cathode materials., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
25. Author Correction: A genomic catalogue of soil microbiomes boosts mining of biodiversity and genetic resources.
- Author
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Ma B, Lu C, Wang Y, Yu J, Zhao K, Xue R, Ren H, Lv X, Pan R, Zhang J, Zhu Y, and Xu J
- Published
- 2023
- Full Text
- View/download PDF
26. Copper assisted sequence-specific chemical protein conjugation at a single backbone amide.
- Author
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Guo M, Zhao K, Guo L, Zhou R, He Q, Lu K, Li T, Liu D, Chen J, Tang J, Fu X, Zhou J, Zheng B, Mann SI, Zhang Y, Huang J, Yang B, Zhou T, Lei Y, and Dang B
- Subjects
- Amides, Proteins, Copper, Immunoconjugates
- Abstract
Direct, site-specific methods of protein functionalization are highly desirable for biotechnology. However, such methods are challenging due to the difficulty of chemically differentiating a single site within a large protein. Herein, we propose "metal binding targeting" strategy and develop a Copper Assisted Sequence-specific conjugation Tag (CAST) method to achieve rapid (second order rate 8.1 M
-1 s-1 ), site-specific protein backbone chemical modification with pinpoint accuracy. We demonstrate the versatility of CAST conjugation by preparing various on-demand modified recombinant proteins, including a homogeneous antibody-drug conjugate with high plasma stability and potent efficacy in vitro and in vivo. Thus, CAST provides an efficient and quantitative method to site-specifically attach payloads on large, native proteins., (© 2023. The Author(s).)- Published
- 2023
- Full Text
- View/download PDF
27. Lithium carbonate-promoted mixed rare earth oxides as a generalized strategy for oxidative coupling of methane with exceptional yields.
- Author
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Zhao K, Gao Y, Wang X, Lis BM, Liu J, Jin B, Smith J, Huang C, Gao W, Wang X, Wang X, Zheng A, Huang Z, Hu J, Schömacker R, Wachs IE, and Li F
- Abstract
The oxidative coupling of methane to higher hydrocarbons offers a promising autothermal approach for direct methane conversion, but its progress has been hindered by yield limitations, high temperature requirements, and performance penalties at practical methane partial pressures (~1 atm). In this study, we report a class of Li
2 CO3 -coated mixed rare earth oxides as highly effective redox catalysts for oxidative coupling of methane under a chemical looping scheme. This catalyst achieves a single-pass C2+ yield up to 30.6%, demonstrating stable performance at 700 °C and methane partial pressures up to 1.4 atm. In-situ characterizations and quantum chemistry calculations provide insights into the distinct roles of the mixed oxide core and Li2 CO3 shell, as well as the interplay between the Pr oxidation state and active peroxide formation upon Li2 CO3 coating. Furthermore, we establish a generalized correlation between Pr4+ content in the mixed lanthanide oxide and hydrocarbons yield, offering a valuable optimization strategy for this class of oxidative coupling of methane redox catalysts., (© 2023. The Author(s).)- Published
- 2023
- Full Text
- View/download PDF
28. A genomic catalogue of soil microbiomes boosts mining of biodiversity and genetic resources.
- Author
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Ma B, Lu C, Wang Y, Yu J, Zhao K, Xue R, Ren H, Lv X, Pan R, Zhang J, Zhu Y, and Xu J
- Subjects
- Metagenome genetics, Biodiversity, Genomics, Soil Microbiology, Soil, Microbiota genetics
- Abstract
Soil harbors a vast expanse of unidentified microbes, termed as microbial dark matter, presenting an untapped reservo)ir of microbial biodiversity and genetic resources, but has yet to be fully explored. In this study, we conduct a large-scale excavation of soil microbial dark matter by reconstructing 40,039 metagenome-assembled genome bins (the SMAG catalogue) from 3304 soil metagenomes. We identify 16,530 of 21,077 species-level genome bins (SGBs) as unknown SGBs (uSGBs), which expand archaeal and bacterial diversity across the tree of life. We also illustrate the pivotal role of uSGBs in augmenting soil microbiome's functional landscape and intra-species genome diversity, providing large proportions of the 43,169 biosynthetic gene clusters and 8545 CRISPR-Cas genes. Additionally, we determine that uSGBs contributed 84.6% of previously unexplored viral-host associations from the SMAG catalogue. The SMAG catalogue provides an useful genomic resource for further studies investigating soil microbial biodiversity and genetic resources., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
29. Evolution of lasR mutants in polymorphic Pseudomonas aeruginosa populations facilitates chronic infection of the lung.
- Author
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Zhao K, Yang X, Zeng Q, Zhang Y, Li H, Yan C, Li JS, Liu H, Du L, Wu Y, Huang G, Huang T, Zhang Y, Zhou H, Wang X, Chu Y, and Zhou X
- Subjects
- Animals, Humans, Pseudomonas aeruginosa genetics, Persistent Infection, Lung, Pulmonary Disease, Chronic Obstructive, Cystic Fibrosis
- Abstract
Chronic infection with the bacterial pathogen Pseudomonas aeruginosa often leads to coexistence of heterogeneous populations carrying diverse mutations. In particular, loss-of-function mutations affecting the quorum-sensing regulator LasR are often found in bacteria isolated from patients with lung chronic infection and cystic fibrosis. Here, we study the evolutionary dynamics of polymorphic P. aeruginosa populations using isolates longitudinally collected from patients with chronic obstructive pulmonary disease (COPD). We find that isolates deficient in production of different sharable extracellular products are sequentially selected in COPD airways, and lasR mutants appear to be selected first due to their quorum-sensing defects. Polymorphic populations including lasR mutants display survival advantages in animal models of infection and modulate immune responses. Our study sheds light on the multistage evolution of P. aeruginosa populations during their adaptation to host lungs., (© 2023. Springer Nature Limited.)
- Published
- 2023
- Full Text
- View/download PDF
30. Protein fibers with self-recoverable mechanical properties via dynamic imine chemistry.
- Author
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Sun J, He H, Zhao K, Cheng W, Li Y, Zhang P, Wan S, Liu Y, Wang M, Li M, Wei Z, Li B, Zhang Y, Li C, Sun Y, Shen J, Li J, Wang F, Ma C, Tian Y, Su J, Chen D, Fan C, Zhang H, and Liu K
- Subjects
- Silk, Imines chemistry, Chemical Engineering
- Abstract
The manipulation of internal interactions at the molecular level within biological fibers is of particular importance but challenging, severely limiting their tunability in macroscopic performances and applications. It thus becomes imperative to explore new approaches to enhance biological fibers' stability and environmental tolerance and to impart them with diverse functionalities, such as mechanical recoverability and stimulus-triggered responses. Herein, we develop a dynamic imine fiber chemistry (DIFC) approach to engineer molecular interactions to fabricate strong and tough protein fibers with recoverability and actuating behaviors. The resulting DIF fibers exhibit extraordinary mechanical performances, outperforming many recombinant silks and synthetic polymer fibers. Remarkably, impaired DIF fibers caused by fatigue or strong acid treatment are quickly recovered in water directed by the DIFC strategy. Reproducible mechanical performance is thus observed. The DIF fibers also exhibit exotic mechanical stability at extreme temperatures (e.g., -196 °C and 150 °C). When triggered by humidity, the DIFC endows the protein fibers with diverse actuation behaviors, such as self-folding, self-stretching, and self-contracting. Therefore, the established DIFC represents an alternative strategy to strengthen biological fibers and may pave the way for their high-tech applications., (© 2023. Springer Nature Limited.)
- Published
- 2023
- Full Text
- View/download PDF
31. An autoimmune pleiotropic SNP modulates IRF5 alternative promoter usage through ZBTB3-mediated chromatin looping.
- Author
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Wang Z, Liang Q, Qian X, Hu B, Zheng Z, Wang J, Hu Y, Bao Z, Zhao K, Zhou Y, Feng X, Yi X, Li J, Shi J, Liu Z, Hao J, Chen K, Yu Y, Sham PC, Lu W, Wang X, Song W, and Li MJ
- Subjects
- Humans, Alleles, Autoimmunity, Chromatin, Polymorphism, Single Nucleotide, Promoter Regions, Genetic, Autoimmune Diseases, Interferon Regulatory Factors, DNA-Binding Proteins
- Abstract
Genetic sharing is extensively observed for autoimmune diseases, but the causal variants and their underlying molecular mechanisms remain largely unknown. Through systematic investigation of autoimmune disease pleiotropic loci, we found most of these shared genetic effects are transmitted from regulatory code. We used an evidence-based strategy to functionally prioritize causal pleiotropic variants and identify their target genes. A top-ranked pleiotropic variant, rs4728142, yielded many lines of evidence as being causal. Mechanistically, the rs4728142-containing region interacts with the IRF5 alternative promoter in an allele-specific manner and orchestrates its upstream enhancer to regulate IRF5 alternative promoter usage through chromatin looping. A putative structural regulator, ZBTB3, mediates the allele-specific loop to promote IRF5-short transcript expression at the rs4728142 risk allele, resulting in IRF5 overactivation and M1 macrophage polarization. Together, our findings establish a causal mechanism between the regulatory variant and fine-scale molecular phenotype underlying the dysfunction of pleiotropic genes in human autoimmunity., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
32. One-stone-for-two-birds strategy to attain beyond 25% perovskite solar cells.
- Author
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Yang T, Gao L, Lu J, Ma C, Du Y, Wang P, Ding Z, Wang S, Xu P, Liu D, Li H, Chang X, Fang J, Tian W, Yang Y, Liu SF, and Zhao K
- Abstract
Even though the perovskite solar cell has been so popular for its skyrocketing power conversion efficiency, its further development is still roadblocked by its overall performance, in particular long-term stability, large-area fabrication and stable module efficiency. In essence, the soft component and ionic-electronic nature of metal halide perovskites usually chaperonage large number of anion vacancy defects that act as recombination centers to decrease both the photovoltaic efficiency and operational stability. Herein, we report a one-stone-for-two-birds strategy in which both anion-fixation and associated undercoordinated-Pb passivation are in situ achieved during crystallization by using a single amidino-based ligand, namely 3-amidinopyridine, for metal-halide perovskite to overcome above challenges. The resultant devices attain a power conversion efficiency as high as 25.3% (certified at 24.8%) with substantially improved stability. Moreover, the device without encapsulation retained 92% of its initial efficiency after 5000 h exposure in ambient and the device with encapsulation retained 95% of its initial efficiency after >500 h working at the maximum power point under continuous light irradiation in ambient. It is expected this one-stone-for-two-birds strategy will benefit large-area fabrication that desires for simplicity., (© 2023. The Author(s).)
- Published
- 2023
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- View/download PDF
33. Remodeling articular immune homeostasis with an efferocytosis-informed nanoimitator mitigates rheumatoid arthritis in mice.
- Author
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Zhang S, Liu Y, Jing W, Chai Q, Tang C, Li Z, Man Z, Chen C, Zhang J, Sun P, Zhang R, Yang Z, Han M, Wang Y, Wei X, Li J, Li W, Abdalla M, Yu G, Shi B, Zhang Y, Zhao K, and Jiang X
- Subjects
- Mice, Animals, Heparin, Low-Molecular-Weight, Joints metabolism, Synovial Membrane metabolism, P-Selectin metabolism, Arthritis, Rheumatoid
- Abstract
Massive intra-articular infiltration of proinflammatory macrophages is a prominent feature of rheumatoid arthritis (RA) lesions, which are thought to underlie articular immune dysfunction, severe synovitis and ultimately joint erosion. Here we report an efferocytosis-informed nanoimitator (EINI) for in situ targeted reprogramming of synovial inflammatory macrophages (SIMs) that thwarts their autoimmune attack and reestablishes articular immune homeostasis, which mitigates RA. The EINI consists of a drug-based core with an oxidative stress-responsive phosphatidylserine (PtdSer) corona and a shell composed of a P-selectin-blocking motif, low molecular weight heparin (LMWH). When systemically administered, the LMWH on the EINI first binds to P-selectin overexpressed on the endothelium in subsynovial capillaries, which functions as an antagonist, disrupting neutrophil synovial trafficking. Due to the strong dysregulation of the synovial microvasculature, the EINI is subsequently enriched in the joint synovium where the shell is disassembled upon the reactive oxygen species stimulation, and PtdSer corona is then exposed. In an efferocytosis-like manner, the PtdSer-coroneted core is in turn phagocytosed by SIMs, which synergistically terminate SIM-initiated pathological cascades and serially reestablish intra-articular immune homeostasis, conferring a chondroprotective effect. These findings demonstrate that SIMs can be precisely remodeled via the efferocytosis-mimetic strategy, which holds potential for RA treatment., (© 2023. The Author(s).)
- Published
- 2023
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- View/download PDF
34. Oncolytic Parapoxvirus induces Gasdermin E-mediated pyroptosis and activates antitumor immunity.
- Author
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Lin J, Sun S, Zhao K, Gao F, Wang R, Li Q, Zhou Y, Zhang J, Li Y, Wang X, Du L, Wang S, Li Z, Lu H, Lan Y, Song D, Guo W, Chen Y, Gao F, Zhao Y, Fan R, Guan J, and He W
- Subjects
- Humans, Oncolytic Viruses, Tumor Microenvironment, Gasdermins, Neoplasms, Oncolytic Virotherapy, Parapoxvirus, Pyroptosis
- Abstract
The advantage of oncolytic viruses (OV) in cancer therapy is their dual effect of directly killing tumours while prompting anti-tumour immune response. Oncolytic parapoxvirus ovis (ORFV) and other OVs are thought to induce apoptosis, but apoptosis, being the immunogenically inert compared to other types of cell death, does not explain the highly inflamed microenvironment in OV-challenged tumors. Here we show that ORFV and its recombinant therapeutic derivatives are able to trigger tumor cell pyroptosis via Gasdermin E (GSDME). This effect is especially prominent in GSDME-low tumor cells, in which ORFV-challenge pre-stabilizes GSDME by decreasing its ubiquitination and subsequently initiates pyroptosis. Consistently, GSDME depletion reduces the proportion of intratumoral cytotoxic T lymphocytes, pyroptotic cell death and the success of tumor ORFV virotherapy. In vivo, the OV preferentially accumulates in the tumour upon systemic delivery and elicits pyroptotic tumor killing. Consequentially, ORFV sensitizes immunologically 'cold' tumors to checkpoint blockade. This study thus highlights the critical role of GSDME-mediated pyroptosis in oncolytic ORFV-based antitumor immunity and identifies combinatorial cancer therapy strategies., (© 2023. The Author(s).)
- Published
- 2023
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- View/download PDF
35. Metal single-site catalyst design for electrocatalytic production of hydrogen peroxide at industrial-relevant currents.
- Author
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Cao P, Quan X, Nie X, Zhao K, Liu Y, Chen S, Yu H, and Chen JG
- Abstract
Direct hydrogen peroxide (H
2 O2 ) electrosynthesis via the two-electron oxygen reduction reaction is a sustainable alternative to the traditional energy-intensive anthraquinone technology. However, high-performance and scalable electrocatalysts with industrial-relevant production rates remain to be challenging, partially due to insufficient atomic level understanding in catalyst design. Here we utilize theoretical approaches to identify transition-metal single-site catalysts for two-electron oxygen reduction using the *OOH binding energy as a descriptor. The theoretical predictions are then used as guidance to synthesize the desired cobalt single-site catalyst with a O-modified Co-(pyrrolic N)4 configuration that can achieve industrial-relevant current densities up to 300 mA cm- 2 with 96-100% Faradaic efficiencies for H2 O2 production at a record rate of 11,527 mmol h- 1 gcat - 1 . Here, we show the feasibility and versatility of metal single-site catalyst design using various commercial carbon and cobalt phthalocyanine as starting materials and the high applicability for H2 O2 electrosynthesis in acidic, neutral and alkaline electrolytes., (© 2023. The Author(s).)- Published
- 2023
- Full Text
- View/download PDF
36. N 6 -methyladenosine RNA modification regulates photosynthesis during photodamage in plants.
- Author
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Zhang M, Zeng Y, Peng R, Dong J, Lan Y, Duan S, Chang Z, Ren J, Luo G, Liu B, Růžička K, Zhao K, Wang HB, and Jin HL
- Subjects
- Gene Silencing, RNA, Messenger genetics, Photosynthesis genetics, Arabidopsis genetics
- Abstract
N
6 -methyladenosine (m6 A) modification of mRNAs affects many biological processes. However, the function of m6 A in plant photosynthesis remains unknown. Here, we demonstrate that m6 A modification is crucial for photosynthesis during photodamage caused by high light stress in plants. The m6 A modification levels of numerous photosynthesis-related transcripts are changed after high light stress. We determine that the Arabidopsis m6 A writer VIRILIZER (VIR) positively regulates photosynthesis, as its genetic inactivation drastically lowers photosynthetic activity and photosystem protein abundance under high light conditions. The m6 A levels of numerous photosynthesis-related transcripts decrease in vir mutants, extensively reducing their transcript and translation levels, as revealed by multi-omics analyses. We demonstrate that VIR associates with the transcripts of genes encoding proteins with functions related to photoprotection (such as HHL1, MPH1, and STN8) and their regulatory proteins (such as regulators of transcript stability and translation), promoting their m6 A modification and maintaining their stability and translation efficiency. This study thus reveals an important mechanism for m6 A-dependent maintenance of photosynthetic efficiency in plants under high light stress conditions., (© 2022. The Author(s).)- Published
- 2022
- Full Text
- View/download PDF
37. Multi-omics analysis identifies osteosarcoma subtypes with distinct prognosis indicating stratified treatment.
- Author
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Jiang Y, Wang J, Sun M, Zuo D, Wang H, Shen J, Jiang W, Mu H, Ma X, Yin F, Lin J, Wang C, Yu S, Jiang L, Lv G, Liu F, Xue L, Tian K, Wang G, Zhou Z, Lv Y, Wang Z, Zhang T, Xu J, Yang L, Zhao K, Sun W, Tang Y, Cai Z, Wang S, and Hua Y
- Subjects
- Young Adult, Adolescent, Child, Humans, Genomics methods, Transcriptome, Platinum, Osteosarcoma genetics, Osteosarcoma therapy, Bone Neoplasms drug therapy, Bone Neoplasms genetics
- Abstract
Osteosarcoma (OS) is a primary malignant bone tumor that most commonly affects children, adolescents, and young adults. Here, we comprehensively analyze genomic, epigenomic and transcriptomic data from 121 OS patients. Somatic mutations are diverse within the cohort, and only TP53 is significantly mutated. Through unsupervised integrative clustering of the multi-omics data, we classify OS into four subtypes with distinct molecular features and clinical prognosis: (1) Immune activated (S-IA), (2) Immune suppressed (S-IS), (3) Homologous recombination deficiency dominant (S-HRD), and (4) MYC driven (S-MD). MYC amplification with HR proficiency tumors is identified with a high oxidative phosphorylation signature resulting in resistance to neoadjuvant chemotherapy. Potential therapeutic targets are identified for each subtype, including platinum-based chemotherapy, immune checkpoint inhibitors, anti-VEGFR, anti-MYC and PARPi-based synthetic lethal strategies. Our comprehensive integrated characterization provides a valuable resource that deepens our understanding of the disease, and may guide future clinical strategies for the precision treatment of OS., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
38. Hi-TrAC reveals division of labor of transcription factors in organizing chromatin loops.
- Author
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Liu S, Cao Y, Cui K, Tang Q, and Zhao K
- Subjects
- Chromosomes metabolism, Regulatory Sequences, Nucleic Acid, Genome, CCCTC-Binding Factor genetics, CCCTC-Binding Factor metabolism, Transcription Factors genetics, Transcription Factors metabolism, Chromatin genetics
- Abstract
The three-dimensional genomic structure plays a critical role in gene expression, cellular differentiation, and pathological conditions. It is pivotal to elucidate fine-scale chromatin architectures, especially interactions of regulatory elements, to understand the temporospatial regulation of gene expression. In this study, we report Hi-TrAC as a proximity ligation-free, robust, and sensitive technique to profile genome-wide chromatin interactions at high-resolution among regulatory elements. Hi-TrAC detects chromatin looping among accessible regions at single nucleosome resolution. With almost half-million identified loops, we reveal a comprehensive interaction network of regulatory elements across the genome. After integrating chromatin binding profiles of transcription factors, we discover that cohesin complex and CTCF are responsible for organizing long-range chromatin loops, related to domain formation; whereas ZNF143 and HCFC1 are involved in structuring short-range chromatin loops between regulatory elements, which directly regulate gene expression. Thus, we introduce a methodology to identify a delicate and comprehensive network of cis-regulatory elements, revealing the complexity and a division of labor of transcription factors in organizing chromatin loops for genome organization and gene expression., (© 2022. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.)
- Published
- 2022
- Full Text
- View/download PDF
39. Large area polymer semiconductor sub-microwire arrays by coaxial focused electrohydrodynamic jet printing for high-performance OFETs.
- Author
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Wang D, Lu L, Zhao Z, Zhao K, Zhao X, Pu C, Li Y, Xu P, Chen X, Guo Y, Suo L, Liang J, Cui Y, and Liu Y
- Abstract
Large area and highly aligned polymer semiconductor sub-microwires were fabricated using the coaxial focused electrohydrodynamic jet printing technology. As indicated by the results, the sub-microwire arrays have smooth morphology, well reproducibility and controllable with a width of ~110 nm. Analysis shows that the molecular chains inside the sub-microwires mainly exhibited edge-on arrangement and the π-stacking direction (010) of the majority of crystals is parallel to the long axis of the sub-microwires. Sub-microwires based organic field effect transistors showed high mobility with an average of 1.9 cm
2 V-1 s-1 , approximately 5 times higher than that of thin film based organic field effect transistors. In addition, the number of sub-microwires can be conveniently controlled by the printing technique, which can subsequently concisely control the performance of organic field effect transistors. This work demonstrates that sub-microwires fabricated by the coaxial focused electrohydrodynamic jet printing technology create an alternative path for the applications of high-performance organic flexible device., (© 2022. The Author(s).)- Published
- 2022
- Full Text
- View/download PDF
40. Opposing functions of circadian protein DBP and atypical E2F family E2F8 in anti-tumor Th9 cell differentiation.
- Author
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Park SA, Lim YJ, Ku WL, Zhang D, Cui K, Tang LY, Chia C, Zanvit P, Chen Z, Jin W, Wang D, Xu J, Liu O, Wang F, Cain A, Guo N, Nakatsukasa H, Wu C, Zhang YE, Zhao K, and Chen W
- Subjects
- Animals, Humans, Mice, Cell Differentiation genetics, Repressor Proteins genetics, RNA, Small Interfering metabolism, Serine metabolism, T-Lymphocytes, Helper-Inducer, Transforming Growth Factor beta metabolism, Transforming Growth Factors metabolism, Interleukin-4 metabolism, Interleukin-9
- Abstract
Interleukin-9 (IL-9)-producing CD4
+ T helper cells (Th9) have been implicated in allergy/asthma and anti-tumor immunity, yet molecular insights on their differentiation from activated T cells, driven by IL-4 and transforming growth factor-beta (TGF-β), is still lacking. Here we show opposing functions of two transcription factors, D-binding protein (DBP) and E2F8, in controlling Th9 differentiation. Specifically, TGF-β and IL-4 signaling induces phosphorylation of the serine 213 site in the linker region of the Smad3 (pSmad3L-Ser213 ) via phosphorylated p38, which is necessary and sufficient for Il9 gene transcription. We identify DBP and E2F8 as an activator and repressor, respectively, for Il9 transcription by pSmad3L-Ser213 . Notably, Th9 cells with siRNA-mediated knockdown for Dbp or E2f8 promote and suppress tumor growth, respectively, in mouse tumor models. Importantly, DBP and E2F8 also exhibit opposing functions in regulating human TH9 differentiation in vitro. Thus, our data uncover a molecular mechanism of Smad3 linker region-mediated, opposing functions of DBP and E2F8 in Th9 differentiation., (© 2022. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.)- Published
- 2022
- Full Text
- View/download PDF
41. Piperazine-derived lipid nanoparticles deliver mRNA to immune cells in vivo.
- Author
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Ni H, Hatit MZC, Zhao K, Loughrey D, Lokugamage MP, Peck HE, Cid AD, Muralidharan A, Kim Y, Santangelo PJ, and Dahlman JE
- Subjects
- Humans, Liposomes, Piperazine, RNA, Messenger metabolism, RNA, Small Interfering metabolism, Lipids chemistry, Nanoparticles chemistry
- Abstract
In humans, lipid nanoparticles (LNPs) have safely delivered therapeutic RNA to hepatocytes after systemic administration and to antigen-presenting cells after intramuscular injection. However, systemic RNA delivery to non-hepatocytes remains challenging, especially without targeting ligands such as antibodies, peptides, or aptamers. Here we report that piperazine-containing ionizable lipids (Pi-Lipids) preferentially deliver mRNA to immune cells in vivo without targeting ligands. After synthesizing and characterizing Pi-Lipids, we use high-throughput DNA barcoding to quantify how 65 chemically distinct LNPs functionally delivered mRNA (i.e., mRNA translated into functional, gene-editing protein) in 14 cell types directly in vivo. By analyzing the relationships between lipid structure and cellular targeting, we identify lipid traits that increase delivery in vivo. In addition, we characterize Pi-A10, an LNP that preferentially delivers mRNA to the liver and splenic immune cells at the clinically relevant dose of 0.3 mg/kg. These data demonstrate that high-throughput in vivo studies can identify nanoparticles with natural non-hepatocyte tropism and support the hypothesis that lipids with bioactive small-molecule motifs can deliver mRNA in vivo., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
42. Differential neutralization and inhibition of SARS-CoV-2 variants by antibodies elicited by COVID-19 mRNA vaccines.
- Author
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Wang L, Kainulainen MH, Jiang N, Di H, Bonenfant G, Mills L, Currier M, Shrivastava-Ranjan P, Calderon BM, Sheth M, Mann BR, Hossain J, Lin X, Lester S, Pusch EA, Jones J, Cui D, Chatterjee P, Jenks MH, Morantz EK, Larson GP, Hatta M, Harcourt JL, Tamin A, Li Y, Tao Y, Zhao K, Lacek K, Burroughs A, Wang W, Wilson M, Wong T, Park SH, Tong S, Barnes JR, Tenforde MW, Self WH, Shapiro NI, Exline MC, Files DC, Gibbs KW, Hager DN, Patel M, Halpin AL, McMullan LK, Lee JS, Xia H, Xie X, Shi PY, Davis CT, Spiropoulou CF, Thornburg NJ, Oberste MS, Dugan VG, Wentworth DE, and Zhou B
- Subjects
- Antibodies, Neutralizing, Antibodies, Viral, COVID-19 Vaccines, Humans, Neutralization Tests, Pandemics, Spike Glycoprotein, Coronavirus, Vaccines, Synthetic, mRNA Vaccines, COVID-19 prevention & control, SARS-CoV-2 genetics
- Abstract
The evolution of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has resulted in the emergence of new variant lineages that have exacerbated the COVID-19 pandemic. Some of those variants were designated as variants of concern/interest (VOC/VOI) by national or international authorities based on many factors including their potential impact on vaccine-mediated protection from disease. To ascertain and rank the risk of VOCs and VOIs, we analyze the ability of 14 variants (614G, Alpha, Beta, Gamma, Delta, Epsilon, Zeta, Eta, Theta, Iota, Kappa, Lambda, Mu, and Omicron) to escape from mRNA vaccine-induced antibodies. The variants show differential reductions in neutralization and replication by post-vaccination sera. Although the Omicron variant (BA.1, BA.1.1, and BA.2) shows the most escape from neutralization, sera collected after a third dose of vaccine (booster sera) retain moderate neutralizing activity against that variant. Therefore, vaccination remains an effective strategy during the COVID-19 pandemic., (© 2022. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.)
- Published
- 2022
- Full Text
- View/download PDF
43. Heparin induces α-synuclein to form new fibril polymorphs with attenuated neuropathology.
- Author
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Tao Y, Sun Y, Lv S, Xia W, Zhao K, Xu Q, Zhao Q, He L, Le W, Wang Y, Liu C, and Li D
- Subjects
- Amyloid metabolism, Cryoelectron Microscopy, Humans, Protein Conformation, Heparin, alpha-Synuclein metabolism
- Abstract
α-Synuclein (α-syn), as a primary pathogenic protein in Parkinson's disease (PD) and other synucleinopathies, exhibits a high potential to form polymorphic fibrils. Chemical ligands have been found to involve in the assembly of α-syn fibrils in patients' brains. However, how ligands influence the fibril polymorphism remains vague. Here, we report the near-atomic structures of α-syn fibrils in complex with heparin, a representative glycosaminoglycan (GAG), determined by cryo-electron microscopy (cryo-EM). The structures demonstrate that the presence of heparin completely alters the fibril assembly via rearranging the charge interactions of α-syn both at the intramolecular and the inter-protofilamental levels, which leads to the generation of four fibril polymorphs. Remarkably, in one of the fibril polymorphs, α-syn folds into a distinctive conformation that has not been observed previously. Moreover, the heparin-α-syn complex fibrils exhibit diminished neuropathology in primary neurons. Our work provides the structural mechanism for how heparin determines the assembly of α-syn fibrils, and emphasizes the important role of biological polymers in the conformational selection and neuropathology regulation of amyloid fibrils., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
44. Deep learning to diagnose Hashimoto's thyroiditis from sonographic images.
- Author
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Zhang Q, Zhang S, Pan Y, Sun L, Li J, Qiao Y, Zhao J, Wang X, Feng Y, Zhao Y, Zheng Z, Yang X, Liu L, Qin C, Zhao K, Liu X, Li C, Zhang L, Yang C, Zhuo N, Zhang H, Liu J, Gao J, Di X, Meng F, Zhang L, Wang Y, Duan Y, Shen H, Li Y, Yang M, Yang Y, Xin X, Wei X, Zhou X, Jin R, Zhang L, Wang X, Song F, Zheng X, Gao M, Chen K, and Li X
- Subjects
- Diagnosis, Differential, Humans, Ultrasonography methods, Deep Learning, Hashimoto Disease diagnostic imaging, Hypothyroidism
- Abstract
Hashimoto's thyroiditis (HT) is the main cause of hypothyroidism. We develop a deep learning model called HTNet for diagnosis of HT by training on 106,513 thyroid ultrasound images from 17,934 patients and test its performance on 5051 patients from 2 datasets of static images and 1 dataset of video data. HTNet achieves an area under the receiver operating curve (AUC) of 0.905 (95% CI: 0.894 to 0.915), 0.888 (0.836-0.939) and 0.895 (0.862-0.927). HTNet exceeds radiologists' performance on accuracy (83.2% versus 79.8%; binomial test, p < 0.001) and sensitivity (82.6% versus 68.1%; p < 0.001). By integrating serologic markers with imaging data, the performance of HTNet was significantly and marginally improved on the video (AUC, 0.949 versus 0.888; DeLong's test, p = 0.004) and static-image (AUC, 0.914 versus 0.901; p = 0.08) testing sets, respectively. HTNet may be helpful as a tool for the management of HT., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
45. Cryo-EM structure of an amyloid fibril formed by full-length human SOD1 reveals its conformational conversion.
- Author
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Wang LQ, Ma Y, Yuan HY, Zhao K, Zhang MY, Wang Q, Huang X, Xu WC, Dai B, Chen J, Li D, Zhang D, Wang Z, Zou L, Yin P, Liu C, and Liang Y
- Subjects
- Amyloid chemistry, Cryoelectron Microscopy, Humans, Mutation, Amyotrophic Lateral Sclerosis, Superoxide Dismutase-1 chemistry
- Abstract
Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease. Misfolded Cu, Zn-superoxide dismutase (SOD1) has been linked to both familial and sporadic ALS. SOD1 fibrils formed in vitro share toxic properties with ALS inclusions. Here we produced cytotoxic amyloid fibrils from full-length apo human SOD1 under reducing conditions and determined the atomic structure using cryo-EM. The SOD1 fibril consists of a single protofilament with a left-handed helix. The fibril core exhibits a serpentine fold comprising N-terminal segment (residues 3-55) and C-terminal segment (residues 86-153) with an intrinsic disordered segment. The two segments are zipped up by three salt bridge pairs. By comparison with the structure of apo SOD1 dimer, we propose that eight β-strands (to form a β-barrel) and one α-helix in the subunit of apo SOD1 convert into thirteen β-strands stabilized by five hydrophobic cavities in the SOD1 fibril. Our data provide insights into how SOD1 converts between structurally and functionally distinct states., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
46. Perirenal adipose afferent nerves sustain pathological high blood pressure in rats.
- Author
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Li P, Liu B, Wu X, Lu Y, Qiu M, Shen Y, Tian Y, Liu C, Chen X, Yang C, Deng M, Wang Y, Gu J, Su Z, Chen X, Zhao K, Sheng Y, Zhang S, Sun W, and Kong X
- Subjects
- Adipose Tissue, Animals, Blood Pressure physiology, Ganglia, Spinal, Rats, Rats, Inbred SHR, Calcitonin Gene-Related Peptide, Hypertension drug therapy
- Abstract
Hypertension is a pathological condition of persistent high blood pressure (BP) of which the underlying neural mechanisms remain obscure. Here, we show that the afferent nerves in perirenal adipose tissue (PRAT) contribute to maintain pathological high BP, without affecting physiological BP. Bilateral PRAT ablation or denervation leads to a long-term reduction of high BP in spontaneous hypertensive rats (SHR), but has no effect on normal BP in control rats. Further, gain- and loss-of-function and neuron transcriptomics studies show that augmented activities and remodeling of L1-L2 dorsal root ganglia neurons are responsible for hypertension in SHR. Moreover, we went on to show that calcitonin gene-related peptide (CGRP) is a key endogenous suppressor of hypertension that is sequestered by pro-hypertensive PRAT in SHRs. Taken together, we identify PRAT afferent nerves as a pro-hypertensive node that sustains high BP via suppressing CGRP, thereby providing a therapeutic target to tackle primary hypertension., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
47. An electrochemically stable homogeneous glassy electrolyte formed at room temperature for all-solid-state sodium batteries.
- Author
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Chi X, Zhang Y, Hao F, Kmiec S, Dong H, Xu R, Zhao K, Ai Q, Terlier T, Wang L, Zhao L, Guo L, Lou J, Xin HL, Martin SW, and Yao Y
- Abstract
All-solid-state sodium batteries (ASSSBs) are promising candidates for grid-scale energy storage. However, there are no commercialized ASSSBs yet, in part due to the lack of a low-cost, simple-to-fabricate solid electrolyte (SE) with electrochemical stability towards Na metal. In this work, we report a family of oxysulfide glass SEs (Na
3 PS4-x Ox , where 0 < x ≤ 0.60) that not only exhibit the highest critical current density among all Na-ion conducting sulfide-based SEs, but also enable high-performance ambient-temperature sodium-sulfur batteries. By forming bridging oxygen units, the Na3 PS4-x Ox SEs undergo pressure-induced sintering at room temperature, resulting in a fully homogeneous glass structure with robust mechanical properties. Furthermore, the self-passivating solid electrolyte interphase at the Na|SE interface is critical for interface stabilization and reversible Na plating and stripping. The new structural and compositional design strategies presented here provide a new paradigm in the development of safe, low-cost, energy-dense, and long-lifetime ASSSBs., (© 2022. The Author(s).)- Published
- 2022
- Full Text
- View/download PDF
48. Thermal-healing of lattice defects for high-energy single-crystalline battery cathodes.
- Author
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Li S, Qian G, He X, Huang X, Lee SJ, Jiang Z, Yang Y, Wang WN, Meng D, Yu C, Lee JS, Chu YS, Ma ZF, Pianetta P, Qiu J, Li L, Zhao K, and Liu Y
- Abstract
Single-crystalline nickel-rich cathodes are a rising candidate with great potential for high-energy lithium-ion batteries due to their superior structural and chemical robustness in comparison with polycrystalline counterparts. Within the single-crystalline cathode materials, the lattice strain and defects have significant impacts on the intercalation chemistry and, therefore, play a key role in determining the macroscopic electrochemical performance. Guided by our predictive theoretical model, we have systematically evaluated the effectiveness of regaining lost capacity by modulating the lattice deformation via an energy-efficient thermal treatment at different chemical states. We demonstrate that the lattice structure recoverability is highly dependent on both the cathode composition and the state of charge, providing clues to relieving the fatigued cathode crystal for sustainable lithium-ion batteries., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
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49. A mechanical metamaterial with reprogrammable logical functions.
- Author
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Mei T, Meng Z, Zhao K, and Chen CQ
- Abstract
Embedding mechanical logic into soft robotics, microelectromechanical systems (MEMS), and robotic materials can greatly improve their functional capacity. However, such logical functions are usually pre-programmed and can hardly be altered during in-life service, limiting their applications under varying working conditions. Here, we propose a reprogrammable mechanological metamaterial (ReMM). Logical computing is achieved by imposing sequential excitations. The system can be initialized and reprogrammed via selectively imposing and releasing the excitations. Realization of universal combinatorial logic and sequential logic (memory) is demonstrated experimentally and numerically. The fabrication scalability of the system is also discussed. We expect the ReMM can serve as a platform for constructing reusable and multifunctional mechanical systems with strong computation and information processing capability., (© 2021. The Author(s).)
- Published
- 2021
- Full Text
- View/download PDF
50. Interdependent iron and phosphorus availability controls photosynthesis through retrograde signaling.
- Author
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Nam HI, Shahzad Z, Dorone Y, Clowez S, Zhao K, Bouain N, Lay-Pruitt KS, Cho H, Rhee SY, and Rouached H
- Subjects
- Arabidopsis, Chlorophyll metabolism, Chloroplasts metabolism, Gene Expression Regulation, Plant, Homeostasis, Iron Deficiencies, Kinetics, Nutrients, Plants genetics, Transcriptome, Iron metabolism, Phosphorus metabolism, Photosynthesis genetics, Photosynthesis physiology, Plants metabolism, Signal Transduction
- Abstract
Iron deficiency hampers photosynthesis and is associated with chlorosis. We recently showed that iron deficiency-induced chlorosis depends on phosphorus availability. How plants integrate these cues to control chlorophyll accumulation is unknown. Here, we show that iron limitation downregulates photosynthesis genes in a phosphorus-dependent manner. Using transcriptomics and genome-wide association analysis, we identify two genes, PHT4;4 encoding a chloroplastic ascorbate transporter and bZIP58, encoding a nuclear transcription factor, which prevent the downregulation of photosynthesis genes leading to the stay-green phenotype under iron-phosphorus deficiency. Joint limitation of these nutrients induces ascorbate accumulation by activating expression of an ascorbate biosynthesis gene, VTC4, which requires bZIP58. Furthermore, we demonstrate that chloroplastic ascorbate transport prevents the downregulation of photosynthesis genes under iron-phosphorus combined deficiency through modulation of ROS homeostasis. Our study uncovers a ROS-mediated chloroplastic retrograde signaling pathway to adapt photosynthesis to nutrient availability., (© 2021. The Author(s).)
- Published
- 2021
- Full Text
- View/download PDF
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