129 results on '"Xu D"'
Search Results
2. JMJD6 is a tumorigenic factor and therapeutic target in neuroblastoma
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Matthew Wong, Yuting Sun, Zhichao Xi, Giorgio Milazzo, Rebecca C. Poulos, Christoph Bartenhagen, Jessica L. Bell, Chelsea Mayoh, Nicholas Ho, Andrew E. Tee, Xiaoqiong Chen, Yang Li, Roberto Ciaccio, Pei Y. Liu, Chen C. Jiang, Qing Lan, Nisitha Jayatilleke, Belamy B. Cheung, Michelle Haber, Murray D. Norris, Xu D. Zhang, Glenn M. Marshall, Jenny Y. Wang, Stefan Hüttelmaier, Matthias Fischer, Jason W. H. Wong, Hongxi Xu, Giovanni Perini, Qihan Dong, Rani E. George, and Tao Liu
- Subjects
Science - Abstract
Although the gain in chromosome 17q21-ter is commonly associated with neuroblastoma, it is not clear which gene of this region mediates tumorigenesis. Here, the authors are showing that JMJD6, which locates in that region, is a neuroblastoma tumorigenic factor.
- Published
- 2019
- Full Text
- View/download PDF
3. JMJD6 is a tumorigenic factor and therapeutic target in neuroblastoma
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Wong, Matthew, Sun, Yuting, Xi, Zhichao, Milazzo, Giorgio, Poulos, Rebecca C., Bartenhagen, Christoph, Bell, Jessica L., Mayoh, Chelsea, Ho, Nicholas, Tee, Andrew E., Chen, Xiaoqiong, Li, Yang, Ciaccio, Roberto, Liu, Pei Y., Jiang, Chen C., Lan, Qing, Jayatilleke, Nisitha, Cheung, Belamy B., Haber, Michelle, Norris, Murray D., Zhang, Xu D., Marshall, Glenn M., Wang, Jenny Y., Hüttelmaier, Stefan, Fischer, Matthias, Wong, Jason W. H., Xu, Hongxi, Perini, Giovanni, Dong, Qihan, George, Rani E., and Liu, Tao
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- 2019
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4. Efficient molecular doping of polymeric semiconductors improved by coupled reaction
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Jiahao Pan, Jing Wang, Kuncai Li, Xu Dai, Qing Li, Daotong Chong, Bin Chen, Junjie Yan, and Hong Wang
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Science - Abstract
Abstract Exploring chemical doping method to improve the electrical conductivity of polymers is still very attractive for researchers. In this work, we report a developed method of doping a polymer semiconductor aided by the coupled reaction that commonly exists in biological systems where a non-spontaneous reaction is driven by a spontaneous reaction. During the doping process, the chemical reaction between the dopant and the polymer is promoted by introducing a thermodynamically favorable reaction via adding additives that are highly reactive to the reduction product of the dopant to form a coupled reaction, thus significantly improving the electrical conductivity of polymers by 3–7 orders. This coupled reaction doping process shows the potential of wide applications in exploring efficient doping systems to prepare functional conducting polymers, which could be a powerful tool for modern organic electronics.
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- 2024
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5. Capillary compression induced outstanding n-type thermoelectric power factor in CNT films towards intelligent temperature controller
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Hong Wang, Kuncai Li, Xin Hao, Jiahao Pan, Tiantian Zhuang, Xu Dai, Jing Wang, Bin Chen, and Daotong Chong
- Subjects
Science - Abstract
Abstract One-dimensional carbon nanotubes are promising candidates for thermoelectrics because of their excellent electrical and mechanical properties. However, the large n-type power factor remains elusive in macroscopic carbon nanotubes films. Herein, we report an outstanding n-type power factor of 6.75 mW m−1 K−2 for macroscopic carbon nanotubes films with high electrical and thermal conductivity. A high-power density curl-able thermoelectric generator is fabricated with the obtained carbon nanotubes films, which exhibits a high normalized power output density of 2.75 W m−1 at a temperature difference of 85 K. The value is higher than that of previously reported flexible all-inorganic thermoelectric generators (
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- 2024
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6. Widespread 2013-2020 decreases and reduction challenges of organic aerosol in China
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Qi Chen, Ruqian Miao, Guannan Geng, Manish Shrivastava, Xu Dao, Bingye Xu, Jiaqi Sun, Xian Zhang, Mingyuan Liu, Guigang Tang, Qian Tang, Hanwen Hu, Ru-Jin Huang, Hao Wang, Yan Zheng, Yue Qin, Song Guo, Min Hu, and Tong Zhu
- Subjects
Science - Abstract
Abstract High concentrations of organic aerosol (OA) occur in Asian countries, leading to great health burdens. Clean air actions have resulted in significant emission reductions of air pollutants in China. However, long-term nation-wide trends in OA and their causes remain unknown. Here, we present both observational and model evidence demonstrating widespread decreases with a greater reduction in primary OA than in secondary OA (SOA) in China during the period of 2013 to 2020. Most of the decline is attributed to reduced residential fuel burning while the interannual variability in SOA may have been driven by meteorological variations. We find contrasting effects of reducing NOx and SO2 on SOA production which may have led to slight overall increases in SOA. Our findings highlight the importance of clean energy replacements in multiple sectors on achieving air-quality targets because of high OA precursor emissions and fluctuating chemical and meteorological conditions.
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- 2024
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7. JMJD6 is a tumorigenic factor and therapeutic target in neuroblastoma
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Nisitha Jayatilleke, Giorgio Milazzo, Giovanni Perini, Andrew E. Tee, Michelle Haber, Hong-Xi Xu, Yang Li, Murray D. Norris, Matthew S. Wong, Zhichao Xi, Chen C. Jiang, Stefan Hüttelmaier, Xiaoqiong Chen, Roberto Ciaccio, Pei Y. Liu, Qihan Dong, Rebecca C. Poulos, Rani E. George, Belamy B. Cheung, Chelsea Mayoh, Yuting Sun, Jessica L. Bell, Glenn M. Marshall, Xu D. Zhang, Matthias Fischer, Tao Liu, Nicholas Ho, Qing Lan, Christoph Bartenhagen, Jenny Y. Wang, Jason W. H. Wong, Wong M., Sun Y., Xi Z., Milazzo G., Poulos R.C., Bartenhagen C., Bell J.L., Mayoh C., Ho N., Tee A.E., Chen X., Li Y., Ciaccio R., Liu P.Y., Jiang C.C., Lan Q., Jayatilleke N., Cheung B.B., Haber M., Norris M.D., Zhang X.D., Marshall G.M., Wang J.Y., Huttelmaier S., Fischer M., Wong J.W.H., Xu H., Perini G., Dong Q., George R.E., and Liu T.
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0301 basic medicine ,Male ,Jumonji Domain-Containing Histone Demethylases ,Carcinogenesis ,General Physics and Astronomy ,Apoptosis ,02 engineering and technology ,medicine.disease_cause ,chemistry.chemical_compound ,Mice ,Neuroblastoma ,Neuroblastoma, JMJD6, N-Myc, E2F2, BRD4 ,E2F2 Transcription Factor ,lcsh:Science ,E2F2 ,Cancer ,Regulation of gene expression ,Mice, Inbred BALB C ,Multidisciplinary ,Histone deacetylase inhibitor ,021001 nanoscience & nanotechnology ,Gene Expression Regulation, Neoplastic ,Female ,0210 nano-technology ,Protein Binding ,medicine.drug_class ,Science ,Receptors, Cell Surface ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Article ,Proto-Oncogene Proteins c-myc ,Paediatric cancer ,03 medical and health sciences ,Panobinostat ,Embryonal neoplasms ,medicine ,Animals ,Humans ,neoplasms ,Cell Proliferation ,General Chemistry ,medicine.disease ,Histone Deacetylase Inhibitors ,030104 developmental biology ,chemistry ,Tumor progression ,Cancer research ,lcsh:Q ,N-Myc - Abstract
Chromosome 17q21-ter is commonly gained in neuroblastoma, but it is unclear which gene in the region is important for tumorigenesis. The JMJD6 gene at 17q21-ter activates gene transcription. Here we show that JMJD6 forms protein complexes with N-Myc and BRD4, and is important for E2F2, N-Myc and c-Myc transcription. Knocking down JMJD6 reduces neuroblastoma cell proliferation and survival in vitro and tumor progression in mice, and high levels of JMJD6 expression in human neuroblastoma tissues independently predict poor patient prognosis. In addition, JMJD6 gene is associated with transcriptional super-enhancers. Combination therapy with the CDK7/super-enhancer inhibitor THZ1 and the histone deacetylase inhibitor panobinostat synergistically reduces JMJD6, E2F2, N-Myc, c-Myc expression, induces apoptosis in vitro and leads to neuroblastoma tumor regression in mice, which are significantly reversed by forced JMJD6 over-expression. Our findings therefore identify JMJD6 as a neuroblastoma tumorigenesis factor, and the combination therapy as a treatment strategy., Although the gain in chromosome 17q21-ter is commonly associated with neuroblastoma, it is not clear which gene of this region mediates tumorigenesis. Here, the authors are showing that JMJD6, which locates in that region, is a neuroblastoma tumorigenic factor.
- Published
- 2019
8. Exploring negative emission potential of biochar to achieve carbon neutrality goal in China
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Xu Deng, Fei Teng, Minpeng Chen, Zhangliu Du, Bin Wang, Renqiang Li, and Pan Wang
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Science - Abstract
Abstract Limiting global warming to within 1.5 °C might require large-scale deployment of premature negative emission technologies with potentially adverse effects on the key sustainable development goals. Biochar has been proposed as an established technology for carbon sequestration with co-benefits in terms of soil quality and crop yield. However, the considerable uncertainties that exist in the potential, cost, and deployment strategies of biochar systems at national level prevent its deployment in China. Here, we conduct a spatially explicit analysis to investigate the negative emission potential, economics, and priority deployment sites of biochar derived from multiple feedstocks in China. Results show that biochar has negative emission potential of up to 0.92 billion tons of CO2 per year with an average net cost of US$90 per ton of CO2 in a sustainable manner, which could satisfy the negative emission demands in most mitigation scenarios compatible with China’s target of carbon neutrality by 2060.
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- 2024
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9. The long noncoding RNA lncNB1 promotes tumorigenesis by interacting with ribosomal protein RPL35
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Roberto Ciaccio, Nenad Bartonicek, Chelsea Mayoh, Pieter Mestdagh, Giovanni Perini, Andrew E. Tee, Murray D. Norris, Michelle J. Henderson, Ross D. Hannan, Marcel E. Dinger, Katherine M. Hannan, Tao Liu, Matthias Fischer, Jo Vandesompele, Thorsten Simon, Michelle Haber, Jesper L.V. Maag, Hui Peng, Glenn M. Marshall, Xu D. Zhang, Matthew S. Wong, Belamy B. Cheung, Giorgio Milazzo, Leming Shi, Bernard Atmadibrata, Nicholas Ho, Jixuan Gao, Amy J. Hulme, Yuting Sun, Jinyan Li, Pei Y. Liu, Jenny Y. Wang, Qing Lan, Sujanna Mondal, Celine Everaert, Liu, Pei Y, Tee, Andrew E, Milazzo, Giorgio, Hannan, Katherine M, Maag, Jesper, Mondal, Sujanna, Atmadibrata, Bernard, Bartonicek, Nenad, Peng, Hui, Ho, Nichola, Mayoh, Chelsea, Ciaccio, Roberto, Sun, Yuting, Henderson, Michelle J, Gao, Jixuan, Everaert, Celine, Hulme, Amy J, Wong, Matthew, Lan, Qing, Cheung, Belamy B, Shi, Leming, Wang, Jenny Y, Simon, Thorsten, Fischer, Matthia, Zhang, Xu D, Marshall, Glenn M, Norris, Murray D, Haber, Michelle, Vandesompele, Jo, Li, Jinyan, Mestdagh, Pieter, Hannan, Ross D, Dinger, Marcel E, Perini, Giovanni, and Liu, Tao
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CHROMATIN ,0301 basic medicine ,Transcription, Genetic ,Carcinogenesis ,General Physics and Astronomy ,MYC ,BIOCONDUCTOR PACKAGE ,Neuroblastoma ,0302 clinical medicine ,DEPDC1B ,Transcription (biology) ,Gene expression ,Medicine and Health Sciences ,Cancer genomics ,E2F1 ,lcsh:Science ,GENE-EXPRESSION ,Mice, Inbred BALB C ,N-Myc Proto-Oncogene Protein ,Multidisciplinary ,Protein Stability ,GTPase-Activating Proteins ,Prognosis ,Up-Regulation ,3. Good health ,Gene Expression Regulation, Neoplastic ,TARGET ,030220 oncology & carcinogenesis ,Female ,RNA, Long Noncoding ,Protein stabilization ,Ribosomal Proteins ,Cell Survival ,Science ,Mice, Nude ,Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,Paediatric cancer ,03 medical and health sciences ,Cell Line, Tumor ,medicine ,Animals ,Humans ,neoplasms ,Cell Proliferation ,lncNB1, RPL35, Long non coding RNA, lncRNA, MYCN, DEPDC1B, Neuroblastoma, E2F1 ,Binding protein ,Biology and Life Sciences ,RNA ,General Chemistry ,medicine.disease ,030104 developmental biology ,Protein Biosynthesis ,NEUROBLASTOMA ,Cancer research ,lcsh:Q ,E2F1 Transcription Factor - Abstract
The majority of patients with neuroblastoma due to MYCN oncogene amplification and consequent N-Myc oncoprotein over-expression die of the disease. Here our analyses of RNA sequencing data identify the long noncoding RNA lncNB1 as one of the transcripts most over-expressed in MYCN-amplified, compared with MYCN-non-amplified, human neuroblastoma cells and also the most over-expressed in neuroblastoma compared with all other cancers. lncNB1 binds to the ribosomal protein RPL35 to enhance E2F1 protein synthesis, leading to DEPDC1B gene transcription. The GTPase-activating protein DEPDC1B induces ERK protein phosphorylation and N-Myc protein stabilization. Importantly, lncNB1 knockdown abolishes neuroblastoma cell clonogenic capacity in vitro and leads to neuroblastoma tumor regression in mice, while high levels of lncNB1 and RPL35 in human neuroblastoma tissues predict poor patient prognosis. This study therefore identifies lncNB1 and its binding protein RPL35 as key factors for promoting E2F1 protein synthesis, N-Myc protein stability and N-Myc-driven oncogenesis, and as therapeutic targets., MYCN amplification is common in neuroblastomas. Here, the authors identify a long noncoding RNA, lncNB1 in these cancers and show that it promotes tumorigenesis by binding to ribosomal protein, RPL35 to enhance E2F1 and DEPDC1B protein synthesis, which phosphorylates ERK to stabilise N-Myc.
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- 2019
10. Ultra-durable superhydrophobic cellular coatings
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Wancheng Gu, Wanbo Li, Yu Zhang, Yage Xia, Qiaoling Wang, Wei Wang, Ping Liu, Xinquan Yu, Hui He, Caihua Liang, Youxue Ban, Changwen Mi, Sha Yang, Wei Liu, Miaomiao Cui, Xu Deng, Zuankai Wang, and Youfa Zhang
- Subjects
Science - Abstract
Abstract Developing versatile, scalable, and durable coatings that resist the accretion of matters (liquid, vapor, and solid phases) in various operating environments is important to industrial applications, yet has proven challenging. Here, we report a cellular coating that imparts liquid-repellence, vapor-imperviousness, and solid-shedding capabilities without the need for complicated structures and fabrication processes. The key lies in designing basic cells consisting of rigid microshells and releasable nanoseeds, which together serve as a rigid shield and a bridge that chemically bonds with matrix and substrate. The durability and strong resistance to accretion of different matters of our cellular coating are evidenced by strong anti-abrasion, enhanced anti-corrosion against saltwater over 1000 h, and maintaining dry in complicated phase change conditions. The cells can be impregnated into diverse matrixes for facile mass production through scalable spraying. Our strategy provides a generic design blueprint for engineering ultra-durable coatings for a wide range of applications.
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- 2023
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11. The long noncoding RNA lncNB1 promotes tumorigenesis by interacting with ribosomal protein RPL35
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Liu, Pei Y., primary, Tee, Andrew E., additional, Milazzo, Giorgio, additional, Hannan, Katherine M., additional, Maag, Jesper, additional, Mondal, Sujanna, additional, Atmadibrata, Bernard, additional, Bartonicek, Nenad, additional, Peng, Hui, additional, Ho, Nicholas, additional, Mayoh, Chelsea, additional, Ciaccio, Roberto, additional, Sun, Yuting, additional, Henderson, Michelle J., additional, Gao, Jixuan, additional, Everaert, Celine, additional, Hulme, Amy J., additional, Wong, Matthew, additional, Lan, Qing, additional, Cheung, Belamy B., additional, Shi, Leming, additional, Wang, Jenny Y., additional, Simon, Thorsten, additional, Fischer, Matthias, additional, Zhang, Xu D., additional, Marshall, Glenn M., additional, Norris, Murray D., additional, Haber, Michelle, additional, Vandesompele, Jo, additional, Li, Jinyan, additional, Mestdagh, Pieter, additional, Hannan, Ross D., additional, Dinger, Marcel E., additional, Perini, Giovanni, additional, and Liu, Tao, additional
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- 2019
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12. Acid enhanced zipping effect to densify MWCNT packing for multifunctional MWCNT films with ultra-high electrical conductivity
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Hong Wang, Xu Sun, Yizhuo Wang, Kuncai Li, Jing Wang, Xu Dai, Bin Chen, Daotong Chong, Liuyang Zhang, and Junjie Yan
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Science - Abstract
Exploiting the electrical and mechanical properties of CNT films remain elusive because of the difficult material process. Here, Wang et al. report multifunctional MWCNT films with crystalline structure which exhibited great electromagnetic interference shielding efficiency, high thermoelectric power factor, and large ampacity.
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- 2023
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13. Durable radiative cooling against environmental aging
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Jianing Song, Wenluan Zhang, Zhengnan Sun, Mengyao Pan, Feng Tian, Xiuhong Li, Ming Ye, and Xu Deng
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Science - Abstract
The high solar reflectance needed by radiative cooling is easily dampened by environmental aging. Here, authors describe durable cooling performance against heavy soiling and long-term ultraviolet exposure of paint-based coatings, enhancing the potential of radiative cooling for real-world applications.
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- 2022
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14. Thresholds of temperature change for mass extinctions
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Haijun Song, David B. Kemp, Li Tian, Daoliang Chu, Huyue Song, and Xu Dai
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Science - Abstract
The linkage between temperature change and extinction rates in the fossil record is well-known qualitatively but little explored quantitatively. Here the authors investigate the relationship of marine animal extinctions with rate and magnitude of temperature change across the last 450 million years, and identify thresholds in climate change linked to mass extinctions.
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- 2021
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15. The pan-cancer lncRNA PLANE regulates an alternative splicing program to promote cancer pathogenesis
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Liu Teng, Yu Chen Feng, Su Tang Guo, Pei Lin Wang, Teng Fei Qi, Yi Meng Yue, Shi Xing Wang, Sheng Nan Zhang, Cai Xia Tang, Ting La, Yuan Yuan Zhang, Xiao Hong Zhao, Jin Nan Gao, Li Yuan Wei, Didi Zhang, Jenny Y. Wang, Yujie Shi, Xiao Ying Liu, Jin Ming Li, Huixia Cao, Tao Liu, Rick F. Thorne, Lei Jin, Feng-Min Shao, and Xu Dong Zhang
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Science - Abstract
Genomic amplification of chromosome 3q often encodes proteins that contribute to cancer development. Here the authors identify a non-coding product of the 3q region, the lncRNA PLANE that promotes tumorigenesis through the deregulation of transcriptional corepressor NCOR2 pre-mRNA splicing.
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- 2021
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16. c-Myc inactivation of p53 through the pan-cancer lncRNA MILIP drives cancer pathogenesis
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Yu Chen Feng, Xiao Ying Liu, Liu Teng, Qiang Ji, Yongyan Wu, Jin Ming Li, Wei Gao, Yuan Yuan Zhang, Ting La, Hessam Tabatabaee, Xu Guang Yan, M. Fairuz B. Jamaluddin, Didi Zhang, Su Tang Guo, Rodney J. Scott, Tao Liu, Rick F. Thorne, Xu Dong Zhang, and Lei Jin
- Subjects
Science - Abstract
c-Myc and p53 operate in a negative feedback manner to maintain cellular homeostasis. Here, the authors report a long noncoding RNA, MILIP as a downstream target of c-Myc and that MILIP represses p53 to support tumorigenicity.
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- 2020
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17. LncRNA REG1CP promotes tumorigenesis through an enhancer complex to recruit FANCJ helicase for REG3A transcription
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Hamed Yari, Lei Jin, Liu Teng, Yufang Wang, Yongyan Wu, Guang Zhi Liu, Wei Gao, Jin Liang, Yanfeng Xi, Yu Chen Feng, Chunming Zhang, Yuan Yuan Zhang, Hessam Tabatabaee, Ting La, Rui Hong Yang, Fu Hua Wang, Xu Guang Yan, Margaret Farrelly, Rodney Scott, Tao Liu, Rick F. Thorne, Su Tang Guo, and Xu Dong Zhang
- Subjects
Science - Abstract
The regenerating islet-derived (REG) protein family suppresses cell death and promotes cell proliferation. Here the authors report that the lncRNA REG1CP forms an RNA–DNA triplex at the promoter of REG3A gene to increase its expression.
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- 2019
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18. Enantioselective Rhodium-Catalyzed Cycloisomerization of 1,6-Allenynes to access 5/6-Fused Bicycle[4.3.0]nonadienes
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Xu Deng, Li-Yang Shi, Jialing Lan, Yu-Qing Guan, Xiaoyong Zhang, Hui Lv, Lung Wa Chung, and Xumu Zhang
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Science - Abstract
Cycloisomerization of 1,n-allenynes allows to efficiently assembly polycyclic skeletons, however its asymmetric variant remains elusive. Here, the authors report the enantioselective Rh(I)-catalyzed cycloisomerization of 1,6-allenynes and disclose an uncommon 5-exo-dig pathway via DFT calculations.
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- 2019
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19. Reconfiguring surface functions using visible-light-controlled metal-ligand coordination
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Chaoming Xie, Wen Sun, Hao Lu, Annika Kretzschmann, Jiahui Liu, Manfred Wagner, Hans-Jürgen Butt, Xu Deng, and Si Wu
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Science - Abstract
Configuring surfaces on-demand for desired functionalities is an ongoing challenge. Here, diverse and tailorable modifications of quartz and porous silica surfaces that are rapidly and reversibly switchable by the use of visible light are achieved via ruthenium-thioether coordination.
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- 2018
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20. Local compressive strain-induced anti-corrosion over isolated Ru-decorated Co 3 O 4 for efficient acidic oxygen evolution.
- Author
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Zuo S, Wu ZP, Xu D, Ahmad R, Zheng L, Zhang J, Zhao L, Huang W, Al Qahtani H, Han Y, Cavallo L, and Zhang H
- Abstract
Enhancing corrosion resistance is essential for developing efficient electrocatalysts for acidic oxygen evolution reaction (OER). Herein, we report the strategic manipulation of the local compressive strain to reinforce the anti-corrosion properties of the non-precious Co
3 O4 support. The incorporation of Ru single atoms, larger in atomic size than Co, into the Co3 O4 lattice (Ru-Co3 O4 ), triggers localized strain compression and lattice distortion on the Co-O lattice. A comprehensive exploration of the correlation between this specific local compressive strain and electrocatalytic performance is conducted through experimental and theoretical analyses. The presence of the localized strain in Ru-Co3 O4 is confirmed by operando X-ray absorption studies and supported by quantum calculations. This local strain, presented in a shortened Co-O bond length, enhances the anti-corrosion properties of Co3 O4 by suppressing metal dissolutions. Consequently, Ru-Co3 O4 shows satisfactory stability, maintaining OER for over 400 hours at 30 mA cm-2 with minimal decay. This study demonstrates the potential of the local strain effect in fortifying catalyst stability for acidic OER and beyond., (© 2024. The Author(s).)- Published
- 2024
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21. Impact of residential solid fuel usage and fuel conversion on children's lung function.
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Wang Y, Zhang C, Zhang W, Xu D, Ding Z, Jin H, Wang X, Zhang J, Cui L, Wu Y, Huang L, and Li T
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- Humans, Child, Male, Female, China epidemiology, Prospective Studies, Respiratory Function Tests, Adolescent, Environmental Exposure adverse effects, Forced Expiratory Volume, Lung physiopathology, Air Pollution, Indoor adverse effects
- Abstract
Solid fuel combustion exposure is a leading global health risk factor, yet evidence on its effects, especially on vulnerable children, is sparse. This large-scale, multi-center prospective study aimed to address this gap by involving 9997 schoolchildren across China between 2013 and 2015. Here we show that lung function levels exhibited a marginally significant decline among children exposed to solid fuel usage. Specifically, FVC and FEV1 decreased by 21.2 mL (95% CI: -15.7, 58.1) and 24.1 mL (-8.4, 56.6), respectively. Additionally, PEF, FEF
25 and FEF75 decreased by 25.7 mL/s (-46.5, 98.0), 32.7 mL/s (-42.7, 108.2), and 35.4 mL/s (-5.9, 76.7), respectively. Persistent exposure to solid fuel usage in children led to greater lung damage. Children with allergy history were more susceptible to solid fuel exposure. Our study highlights the adverse impact of solid fuel usage on children and the need to promote clean fuel usage for this vulnerable population., (© 2024. The Author(s).)- Published
- 2024
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22. A hybrid electro-thermochemical device for methane production from the air.
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Huang Y, Xu D, Deng S, and Lin M
- Abstract
Coupling direct air capture (DAC) with methane (CH
4 ) production is a potential strategy for fuel production from the air. Here, we report a hybrid electro-thermochemical device for direct CH4 production from air. The proposed device features the cogeneration of carbon dioxide (CO2 ) and hydrogen (H2 ) in a single compartment via a bipolar membrane electrodialysis module, avoiding a separate water electrolyzer, followed by a thermochemical methanation reaction to produce CH4 . H2 -induced disturbances lead to efficient CO2 extraction without pumping requirement. The energy consumption and techno-economic analysis predict an energy reduction of 37.8% for DAC and a cost reduction of 36.6% compared with the decoupled route, respectively. Accordingly, CH4 cost is reduced by 12.6%. Our proof-of-concept experiments show that the energy consumption for CO2 release and H2 production is 704.0 kJ mol-1 and 967.4 kJ mol-1 , respectively with subsequent methanation achieving a 97.3% conversion of CO2 and a CH4 production energy of 5206.4 kJ mol-1 showing a promising pathway for fuel processing from the air., (© 2024. The Author(s).)- Published
- 2024
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23. Author Correction: Aneuploid embryonic stem cells drive teratoma metastasis.
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Xiao R, Xu D, Zhang M, Chen Z, Cheng L, Du S, Lu M, Zhou T, Li R, Bai F, and Huang Y
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- 2024
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24. Atomically dispersed recognition unit for selective in vivo photoelectrochemical medicine detection.
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Xu X, Xu D, Lu S, Zhou X, Yang S, and Zhang Z
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- Animals, Mice, Male, Female, Copper chemistry, Precision Medicine methods, Biosensing Techniques methods, Titanium chemistry, Electrochemical Techniques methods, Tetracycline
- Abstract
Continuous and long-term therapeutic monitoring of medicine molecules in biological systems will revolutionize healthcare by offering personalized pharmacokinetic reports. However, the extremely complex biological environment brings great challenges for in vivo molecule detection in living organisms. Here we introduce an in vivo photoelectrochemical biosensor following a reverse design strategy with single atoms as molecular recognition units. Atomic dispersion of Cu single atoms on TiO
2-x substrate create synergistic anchoring triple-site for efficiently and selectively capturing of dual-carbonyl group and neighboring dual-hydroxyl group of tetracycline molecules. The photoelectrode is encapsulated with antibiofouling layer and implanted into the vein of living mouse to enable long-term in vivo monitoring of tetracycline in real biological environments. It is important to note that our approach was exclusively tested in male mice, and therefore, the findings may not be generalizable to female mice or other species without further research. The rationally designed biological-components-free in vivo biosensor with excellent selectivity, robustness, and stability endows possibility for enabling personalized medicine guidance through real-time feedbacking information and providing direct and authentic medicine molecular analysis., (© 2024. The Author(s).)- Published
- 2024
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25. Electronic communications between active sites on individual metallic nanoparticles in catalysis.
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Xu D, Jin Y, He B, Fang X, Chen G, Qu W, Xu C, Chen J, Ma Z, Chen L, Tang X, Liu X, Wei G, and Chen Y
- Abstract
Catalytic activity of metal particles is reported to originate from the appearance of nonmetallic states, but conductive metallic particles, as an electron reservoir, should render electron delivery between reactants more favorably so as to have higher activity. We present that metallic rhodium particle catalysts are highly active in the low-temperature oxidation of carbon monoxide, whereas nonmetallic rhodium clusters or monoatoms on alumina remain catalytically inert. Experimental and theoretical results evidence the presence of electronic communications in between vertex atom active sites of individual metallic particles in the reaction. The electronic communications dramatically lower apparent activation energies via coupling two electrochemical-like half-reactions occurring on different active sites, which enable the metallic particles to show turnover frequencies at least four orders of magnitude higher than the nonmetallic clusters or monoatoms. Similar results are found for other metallic particle catalysts, implying the importance of electronic communications between active sites in heterogeneous catalysis., (© 2024. The Author(s).)
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- 2024
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26. CRISPR/Cas-mediated "one to more" lighting-up nucleic acid detection using aggregation-induced emission luminogens.
- Author
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Guo Y, Zhou Y, Duan H, Xu D, Wei M, Wu Y, Xiong Y, Chen X, Wang S, Liu D, Huang X, Xin H, Xiong Y, and Tang BZ
- Subjects
- Humans, Norovirus genetics, COVID-19 virology, DNA genetics, Fluorescent Dyes chemistry, CRISPR-Cas Systems, SARS-CoV-2 genetics
- Abstract
CRISPR diagnostics are effective but suffer from low signal transduction efficiency, limited sensitivity, and poor stability due to their reliance on the trans-cleavage of single-stranded nucleic acid fluorescent reporters. Here, we present CrisprAIE, which integrates CRISPR/Cas reactions with "one to more" aggregation-induced emission luminogen (AIEgen) lighting-up fluorescence generated by the trans-cleavage of Cas proteins to AIEgen-incorporated double-stranded DNA labeled with single-stranded nucleic acid linkers and Black Hole Quencher groups at both ends (Q-dsDNA/AIEgens-Q). CrisprAIE demonstrates superior performance in the clinical nucleic acid detection of norovirus and SARS-CoV-2 regardless of amplification. Moreover, the diagnostic potential of CrisprAIE is further enhanced by integrating it with spherical nucleic acid-modified AIEgens (SNA/AIEgens) and a portable cellphone-based readout device. The improved CrisprAIE system, utilizing Q-dsDNA/AIEgen-Q and SNA/AIEgen reporters, exhibits approximately 80- and 270-fold improvements in sensitivity, respectively, compared to conventional CRISPR-based diagnostics. We believe CrisprAIE can be readily extended as a universal signal generation strategy to significantly enhance the detection efficiency of almost all existing CRISPR-based diagnostics., (© 2024. The Author(s).)
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- 2024
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27. Biodegradable oxygen-evolving metalloantibiotics for spatiotemporal sono-metalloimmunotherapy against orthopaedic biofilm infections.
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Su Z, Xu D, Hu X, Zhu W, Kong L, Qian Z, Mei J, Ma R, Shang X, Fan W, and Zhu C
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- Animals, Mice, Anti-Bacterial Agents pharmacology, Hydrogen Peroxide metabolism, Immunotherapy methods, Humans, Ultrasonic Therapy methods, Nanoparticles chemistry, Signal Transduction drug effects, Antigens, Bacterial immunology, Staphylococcus aureus drug effects, Female, Biofilms drug effects, Manganese Compounds chemistry, Manganese Compounds pharmacology, Oxygen metabolism, Oxides pharmacology, Oxides chemistry
- Abstract
Pathogen-host competition for manganese and intricate immunostimulatory pathways severely attenuates the efficacy of antibacterial immunotherapy against biofilm infections associated with orthopaedic implants. Herein, we introduce a spatiotemporal sono-metalloimmunotherapy (SMIT) strategy aimed at efficient biofilm ablation by custom design of ingenious biomimetic metal-organic framework (PCN-224)-coated MnO
2 -hydrangea nanoparticles (MnPM) as a metalloantibiotic. Upon reaching the acidic H2 O2 -enriched biofilm microenvironment, MnPM can convert abundant H2 O2 into oxygen, which is conducive to significantly enhancing the efficacy of ultrasound (US)-triggered sonodynamic therapy (SDT), thereby exposing bacteria-associated antigens (BAAs). Moreover, MnPM disrupts bacterial homeostasis, further killing more bacteria. Then, the Mn ions released from the degraded MnO2 can recharge immune cells to enhance the cGAS-STING signaling pathway sensing of BAAs, further boosting the immune response and suppressing biofilm growth via biofilm-specific T cell responses. Following US withdrawal, the sustained oxygenation promotes the survival and migration of fibroblasts, stimulates the expression of angiogenic growth factors and angiogenesis, and neutralizes excessive inflammation. Our findings highlight that MnPM may act as an immune costimulatory metalloantibiotic to regulate the cGAS-STING signaling pathway, presenting a promising alternative to antibiotics for orthopaedic biofilm infection treatment and pro-tissue repair., (© 2024. The Author(s).)- Published
- 2024
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28. Robust poor man's Majorana zero modes using Yu-Shiba-Rusinov states.
- Author
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Zatelli F, van Driel D, Xu D, Wang G, Liu CX, Bordin A, Roovers B, Mazur GP, van Loo N, Wolff JC, Bozkurt AM, Badawy G, Gazibegovic S, Bakkers EPAM, Wimmer M, Kouwenhoven LP, and Dvir T
- Abstract
Kitaev chains in quantum dot-superconductor arrays are a promising platform for the realization of topological superconductivity. As recently demonstrated, even a two-site chain can host Majorana zero modes known as "poor man's Majorana". Harnessing the potential of these states for quantum information processing, however, requires increasing their robustness to external perturbations. Here, we form a two-site Kitaev chain using Yu-Shiba-Rusinov states in proximitized quantum dots. By deterministically tuning the hybridization between the quantum dots and the superconductor, we observe poor man's Majorana states with a gap larger than 70 μeV. The sensitivity to charge fluctuations is also greatly reduced compared to Kitaev chains made with non-proximitized dots. The systematic control and improved energy scales of poor man's Majorana states realized with Yu-Shiba-Rusinov states will benefit the realization of longer Kitaev chains, parity qubits, and the demonstration of non-Abelian physics., (© 2024. The Author(s).)
- Published
- 2024
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29. Graph Fourier transform for spatial omics representation and analyses of complex organs.
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Chang Y, Liu J, Jiang Y, Ma A, Yeo YY, Guo Q, McNutt M, Krull JE, Rodig SJ, Barouch DH, Nolan GP, Xu D, Jiang S, Li Z, Liu B, and Ma Q
- Subjects
- Humans, Mice, Animals, Lymph Nodes metabolism, Transcriptome, Machine Learning, Gene Expression Profiling methods, Palatine Tonsil metabolism, Palatine Tonsil cytology, B-Lymphocytes metabolism, Fourier Analysis, Proteomics methods
- Abstract
Spatial omics technologies decipher functional components of complex organs at cellular and subcellular resolutions. We introduce Spatial Graph Fourier Transform (SpaGFT) and apply graph signal processing to a wide range of spatial omics profiling platforms to generate their interpretable representations. This representation supports spatially variable gene identification and improves gene expression imputation, outperforming existing tools in analyzing human and mouse spatial transcriptomics data. SpaGFT can identify immunological regions for B cell maturation in human lymph nodes Visium data and characterize variations in secondary follicles using in-house human tonsil CODEX data. Furthermore, it can be integrated seamlessly into other machine learning frameworks, enhancing accuracy in spatial domain identification, cell type annotation, and subcellular feature inference by up to 40%. Notably, SpaGFT detects rare subcellular organelles, such as Cajal bodies and Set1/COMPASS complexes, in high-resolution spatial proteomics data. This approach provides an explainable graph representation method for exploring tissue biology and function., (© 2024. The Author(s).)
- Published
- 2024
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30. Nucleolar stress induces nucleolar stress body formation via the NOSR-1/NUMR-1 axis in Caenorhabditis elegans.
- Author
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Hong M, Zhou X, Zeng C, Xu D, Xu T, Liao S, Wang K, Zhu C, Shan G, Huang X, Chen X, Feng X, and Guang S
- Subjects
- Animals, Basic-Leucine Zipper Transcription Factors metabolism, Basic-Leucine Zipper Transcription Factors genetics, Nuclear Proteins metabolism, Nuclear Proteins genetics, RNA, Ribosomal metabolism, RNA, Ribosomal genetics, Caenorhabditis elegans genetics, Caenorhabditis elegans metabolism, Caenorhabditis elegans Proteins metabolism, Caenorhabditis elegans Proteins genetics, Cell Nucleolus metabolism, Stress, Physiological
- Abstract
Environmental stimuli not only alter gene expression profiles but also induce structural changes in cells. How distinct nuclear bodies respond to cellular stress is poorly understood. Here, we identify a subnuclear organelle named the nucleolar stress body (NoSB), the formation of which is induced by the inhibition of rRNA transcription or inactivation of rRNA processing and maturation in C. elegans. NoSB does not colocalize with other previously described subnuclear organelles. We conduct forward genetic screening and identify a bZIP transcription factor, named nucleolar stress response-1 (NOSR-1), that is required for NoSB formation. The inhibition of rRNA transcription or inactivation of rRNA processing and maturation increases nosr-1 expression. By using transcriptome analysis of wild-type animals subjected to different nucleolar stress conditions and nosr-1 mutants, we identify that the SR-like protein NUMR-1 (nuclear localized metal responsive) is the target of NOSR-1. Interestingly, NUMR-1 is a component of NoSB and itself per se is required for the formation of NoSB. We conclude that the NOSR-1/NUMR-1 axis likely responds to nucleolar stress and mediates downstream stress-responsive transcription programs and subnuclear morphology alterations in C. elegans., (© 2024. The Author(s).)
- Published
- 2024
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31. SARS-CoV-2 N protein-induced Dicer, XPO5, SRSF3, and hnRNPA3 downregulation causes pneumonia.
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Luo YW, Zhou JP, Ji H, Xu D, Zheng A, Wang X, Dai Z, Luo Z, Cao F, Wang XY, Bai Y, Chen D, Chen Y, Wang Q, Yang Y, Zhang X, Chiu S, Peng X, Huang AL, and Tang KF
- Subjects
- Animals, Humans, Mice, DEAD-box RNA Helicases metabolism, DEAD-box RNA Helicases genetics, Down-Regulation, Lung metabolism, Lung pathology, Lung virology, Male, Female, MicroRNAs genetics, MicroRNAs metabolism, RNA Splicing, Autophagy genetics, DNA Damage, Heterogeneous-Nuclear Ribonucleoprotein Group A-B, Serine-Arginine Splicing Factors metabolism, Serine-Arginine Splicing Factors genetics, Ribonuclease III metabolism, Ribonuclease III genetics, SARS-CoV-2 genetics, COVID-19 metabolism, COVID-19 virology, COVID-19 genetics, Karyopherins metabolism, Karyopherins genetics
- Abstract
Though RNAi and RNA-splicing machineries are involved in regulating severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) replication, their precise roles in coronavirus disease 2019 (COVID-19) pathogenesis remain unclear. Herein, we show that decreased RNAi component (Dicer and XPO5) and splicing factor (SRSF3 and hnRNPA3) expression correlate with increased COVID-19 severity. SARS-CoV-2 N protein induces the autophagic degradation of Dicer, XPO5, SRSF3, and hnRNPA3, inhibiting miRNA biogenesis and RNA splicing and triggering DNA damage, proteotoxic stress, and pneumonia. Dicer, XPO5, SRSF3, and hnRNPA3 knockdown increases, while their overexpression decreases, N protein-induced pneumonia's severity. Older mice show lower expression of Dicer, XPO5, SRSF3, and hnRNPA3 in their lung tissues and exhibit more severe N protein-induced pneumonia than younger mice. PJ34, a poly(ADP-ribose) polymerase inhibitor, or anastrozole, an aromatase inhibitor, ameliorates N protein- or SARS-CoV-2-induced pneumonia by restoring Dicer, XPO5, SRSF3, and hnRNPA3 expression. These findings will aid in developing improved treatments for SARS-CoV-2-associated pneumonia., (© 2024. The Author(s).)
- Published
- 2024
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32. Dehydration regulates structural reorganization of dynamic hydrogels.
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Xu D, Meng X, Liu S, Poisson J, Vana P, and Zhang K
- Abstract
The dehydration process is widely recognized as a significant phenomenon in nature. Hydrogels, which are important functional materials with high water content and crosslinked networks, encounter the issue of dehydration in their practical applications. Here, we report the distinctive anisotropic dehydration modality of dynamic hydrogels, which is fundamentally different from the more commonly observed isotropic dehydration of covalent hydrogels. Xerogels derived from dynamic hydrogel dehydration will fully cover a curved substrate surface and exhibit hollow structures with internal knots, in contrast to the bulk xerogels produced by covalent hydrogel dehydration. Depending on the competing cohesion of polymer chains and the adhesion at the hydrogel-substrate interface, the previously overlooked reorganization of polymer networks within dynamic hydrogels, triggered by dehydration-induced stress, has been discovered to regulate such macroscopic structural reconstruction for dynamic hydrogel dehydration. With the attached hydrogel-substrate interface, the surface microstructures of substrates can also be engraved onto xerogels with high resolution and on a large scale. This work will greatly enhance our understanding of the soft matter dehydration process and broaden the applications of dehydration technologies using water-containing materials., (© 2024. The Author(s).)
- Published
- 2024
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33. The gradual establishment of complex coumarin biosynthetic pathway in Apiaceae.
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Huang XC, Tang H, Wei X, He Y, Hu S, Wu JY, Xu D, Qiao F, Xue JY, and Zhao Y
- Subjects
- Plant Proteins genetics, Plant Proteins metabolism, Evolution, Molecular, Gene Duplication, Coumarins metabolism, Biosynthetic Pathways genetics, Apiaceae genetics, Apiaceae metabolism, Phylogeny
- Abstract
Complex coumarins (CCs) represent characteristic metabolites found in Apiaceae plants, possessing significant medical value. Their essential functional role is likely as protectants against pathogens and regulators responding to environmental stimuli. Utilizing genomes and transcriptomes from 34 Apiaceae plants, including our recently sequenced Peucedanum praeruptorum, we conduct comprehensive phylogenetic analyses to reconstruct the detailed evolutionary process of the CC biosynthetic pathway in Apiaceae. Our results show that three key enzymes - p-coumaroyl CoA 2'-hydroxylase (C2'H), C-prenyltransferase (C-PT), and cyclase - originated successively at different evolutionary nodes within Apiaceae through various means of gene duplications: ectopic and tandem duplications. Neofunctionalization endows these enzymes with novel functions necessary for CC biosynthesis, thus completing the pathway. Candidate genes are cloned for heterologous expression and subjected to in vitro enzymatic assays to test our hypothesis regarding the origins of the key enzymes, and the results precisely validate our evolutionary inferences. Among the three enzymes, C-PTs are likely the primary determinant of the structural diversity of CCs (linear/angular), due to divergent activities evolved to target different positions (C-6 or C-8) of umbelliferone. A key amino acid variation (Ala161/Thr161) is identified and proven to play a crucial role in the alteration of enzymatic activity, possibly resulting in distinct binding forms between enzymes and substrates, thereby leading to different products. In conclusion, this study provides a detailed trajectory for the establishment and evolution of the CC biosynthetic pathway in Apiaceae. It explains why only a portion, not all, of Apiaceae plants can produce CCs and reveals the mechanisms of CC structural diversity among different Apiaceae plants., (© 2024. The Author(s).)
- Published
- 2024
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34. Gut-derived memory γδ T17 cells exacerbate sepsis-induced acute lung injury in mice.
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Xie B, Wang M, Zhang X, Zhang Y, Qi H, Liu H, Wu Y, Wen X, Chen X, Han M, Xu D, Sun X, Zhang X, Zhao X, Shang Y, Yuan S, and Zhang J
- Subjects
- Animals, Mice, Male, Receptors, Antigen, T-Cell, gamma-delta metabolism, Wnt Signaling Pathway immunology, Macrophages, Alveolar immunology, Intestine, Small immunology, Intestine, Small pathology, Intraepithelial Lymphocytes immunology, Disease Models, Animal, Antigens, Ly metabolism, Immunologic Memory, Sepsis immunology, Sepsis complications, Acute Lung Injury immunology, Acute Lung Injury pathology, Interleukin-17 metabolism, Interleukin-17 immunology, Cell Movement, Lung immunology, Lung pathology, Mice, Inbred C57BL
- Abstract
Sepsis is a critical global health concern linked to high mortality rates, often due to acute lung injury (ALI)/acute respiratory distress syndrome (ARDS). While the gut-lung axis involvement in ALI is recognized, direct migration of gut immune cells to the lung remains unclear. Our study reveals sepsis-induced migration of γδ T17 cells from the small intestine to the lung, triggering an IL-17A-dominated inflammatory response in mice. Wnt signaling activation in alveolar macrophages drives CCL1 upregulation, facilitating γδ T17 cell migration. CD44
+ Ly6C- IL-7Rhigh CD8low cells are the primary migratory subtype exacerbating ALI. Esketamine attenuates ALI by inhibiting pulmonary Wnt/β-catenin signaling-mediated migration. This work underscores the pivotal role of direct gut-to-lung memory γδ T17 cell migration in septic ALI and clarifies the importance of localized IL-17A elevation in the lung., (© 2024. The Author(s).)- Published
- 2024
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35. Germ granule compartments coordinate specialized small RNA production.
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Chen X, Wang K, Mufti FUD, Xu D, Zhu C, Huang X, Zeng C, Jin Q, Huang X, Yan YH, Dong MQ, Feng X, Shi Y, Kennedy S, and Guang S
- Subjects
- Animals, RNA, Messenger metabolism, RNA, Messenger genetics, DEAD-box RNA Helicases metabolism, DEAD-box RNA Helicases genetics, RNA-Dependent RNA Polymerase metabolism, RNA-Dependent RNA Polymerase genetics, Intrinsically Disordered Proteins metabolism, Intrinsically Disordered Proteins genetics, Caenorhabditis elegans metabolism, Caenorhabditis elegans genetics, Caenorhabditis elegans Proteins metabolism, Caenorhabditis elegans Proteins genetics, Germ Cells metabolism, Cytoplasmic Granules metabolism
- Abstract
Germ granules are biomolecular condensates present in most animal germ cells. One function of germ granules is to help maintain germ cell totipotency by organizing mRNA regulatory machinery, including small RNA-based gene regulatory pathways. The C. elegans germ granule is compartmentalized into multiple subcompartments whose biological functions are largely unknown. Here, we identify an uncharted subcompartment of the C. elegans germ granule, which we term the E granule. The E granule is nonrandomly positioned within the germ granule. We identify five proteins that localize to the E granule, including the RNA-dependent RNA polymerase (RdRP) EGO-1, the Dicer-related helicase DRH-3, the Tudor domain-containing protein EKL-1, and two intrinsically disordered proteins, EGC-1 and ELLI-1. Localization of EGO-1 to the E granule enables synthesis of a specialized class of 22G RNAs, which derive exclusively from 5' regions of a subset of germline-expressed mRNAs. Defects in E granule assembly elicit disordered production of endogenous siRNAs, which disturbs fertility and the RNAi response. Our results define a distinct subcompartment of the C. elegans germ granule and suggest that one function of germ granule compartmentalization is to facilitate the localized production of specialized classes of small regulatory RNAs., (© 2024. The Author(s).)
- Published
- 2024
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36. Ambient hydrogenation of solid aromatics enabled by a high entropy alloy nanocatalyst.
- Author
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Jing Z, Guo Y, Wang Q, Yan X, Yue G, Li Z, Liu H, Qin R, Zhong C, Li M, Xu D, Yao Y, Yao Y, and Shuai M
- Abstract
Hydrogenation is a versatile chemical process with significant applications in various industries, including food production, petrochemical refining, pharmaceuticals, and hydrogen carriers/safety. Traditional hydrogenation of aromatics, hindered by the stable π-conjugated phenyl ring structures, typically requires high temperatures and pressures, making ambient hydrogenation a grand challenge. Herein, we introduce a PdPtRuCuNi high entropy alloy (HEA) nanocatalyst, achieving an exceptional 100% hydrogenation of carbon-carbon unsaturated bonds, including alkynyl and phenyl groups, in solid 1,4-bis(phenylethynyl)benzene (DEB) at 25 °C under ≤1 bar H
2 and solventless condition. This results in a threefold higher hydrogen uptake for DEB-contained composites compared to conventional Pd catalysts, which can only hydrogenate the alkynyl groups with a ~ 27% conversion of DEB. Our experimental results, complemented by theoretical calculations, reveal that PdPtRu alloy is highly active and crucial in enabling the hydrogenation of phenyl groups, while all five elements work synergistically to regulate the reaction rate. Remarkably, this newly developed catalyst also achieves nearly 100% reactivity for ambient hydrogenation of a broad range of aromatics, suggesting its universal effectiveness. Our research uncovers a novel material platform and catalyst design principle for efficient and general hydrogenation. The multi-element synergy in HEA also promises unique catalytic behaviors beyond hydrogenation applications., (© 2024. The Author(s).)- Published
- 2024
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37. KAT8-mediated H4K16ac is essential for sustaining trophoblast self-renewal and proliferation via regulating CDX2.
- Author
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Bi S, Huang L, Chen Y, Hu Z, Li S, Wang Y, Huang B, Zhang L, Huang Y, Dai B, Du L, Tu Z, Wang Y, Xu D, Xu X, Sun W, Kzhyshkowska J, Wang H, Chen D, Wang F, and Zhang S
- Subjects
- Animals, Female, Humans, Mice, Pregnancy, Abortion, Habitual metabolism, Abortion, Habitual genetics, Mice, Knockout, Histones metabolism, Cell Differentiation, Placentation genetics, Trophoblasts metabolism, CDX2 Transcription Factor metabolism, CDX2 Transcription Factor genetics, Cell Proliferation, Cell Self Renewal genetics, Histone Acetyltransferases metabolism, Histone Acetyltransferases genetics
- Abstract
Abnormal trophoblast self-renewal and differentiation during early gestation is the major cause of miscarriage, yet the underlying regulatory mechanisms remain elusive. Here, we show that trophoblast specific deletion of Kat8, a MYST family histone acetyltransferase, leads to extraembryonic ectoderm abnormalities and embryonic lethality. Employing RNA-seq and CUT&Tag analyses on trophoblast stem cells (TSCs), we further discover that KAT8 regulates the transcriptional activation of the trophoblast stemness marker, CDX2, via acetylating H4K16. Remarkably, CDX2 overexpression partially rescues the defects arising from Kat8 knockout. Moreover, increasing H4K16ac via using deacetylase SIRT1 inhibitor, EX527, restores CDX2 levels and promoted placental development. Clinical analysis shows reduced KAT8, CDX2 and H4K16ac expression are associated with recurrent pregnancy loss (RPL). Trophoblast organoids derived from these patients exhibit impaired TSC self-renewal and growth, which are significantly ameliorated with EX527 treatment. These findings suggest the therapeutic potential of targeting the KAT8-H4K16ac-CDX2 axis for mitigating RPL, shedding light on early gestational abnormalities., (© 2024. The Author(s).)
- Published
- 2024
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38. CRISPR screens reveal convergent targeting strategies against evolutionarily distinct chemoresistance in cancer.
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Zhong C, Jiang WJ, Yao Y, Li Z, Li Y, Wang S, Wang X, Zhu W, Wu S, Wang J, Fan S, Ma S, Liu Y, Zhang H, Zhao W, Zhao L, Feng Y, Li Z, Guo R, Yu L, Pei F, Hu J, Feng X, Yang Z, Yang Z, Yang X, Hou Y, Zhang D, Xu D, Sheng R, Li Y, Liu L, Wu HJ, Huang J, and Fei T
- Subjects
- Humans, Cell Line, Tumor, Colorectal Neoplasms genetics, Colorectal Neoplasms drug therapy, Animals, Neoplasms genetics, Neoplasms drug therapy, Clustered Regularly Interspaced Short Palindromic Repeats genetics, Mice, Gene Expression Regulation, Neoplastic drug effects, Drug Resistance, Neoplasm genetics, Antineoplastic Agents pharmacology, Antineoplastic Agents therapeutic use, Oxaliplatin pharmacology, Irinotecan pharmacology, CRISPR-Cas Systems genetics, Protein Serine-Threonine Kinases genetics, Protein Serine-Threonine Kinases metabolism, Protein Serine-Threonine Kinases antagonists & inhibitors
- Abstract
Resistance to chemotherapy has been a major hurdle that limits therapeutic benefits for many types of cancer. Here we systematically identify genetic drivers underlying chemoresistance by performing 30 genome-scale CRISPR knockout screens for seven chemotherapeutic agents in multiple cancer cells. Chemoresistance genes vary between conditions primarily due to distinct genetic background and mechanism of action of drugs, manifesting heterogeneous and multiplexed routes towards chemoresistance. By focusing on oxaliplatin and irinotecan resistance in colorectal cancer, we unravel that evolutionarily distinct chemoresistance can share consensus vulnerabilities identified by 26 second-round CRISPR screens with druggable gene library. We further pinpoint PLK4 as a therapeutic target to overcome oxaliplatin resistance in various models via genetic ablation or pharmacological inhibition, highlighting a single-agent strategy to antagonize evolutionarily distinct chemoresistance. Our study not only provides resources and insights into the molecular basis of chemoresistance, but also proposes potential biomarkers and therapeutic strategies against such resistance., (© 2024. The Author(s).)
- Published
- 2024
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39. Podocyte OTUD5 alleviates diabetic kidney disease through deubiquitinating TAK1 and reducing podocyte inflammation and injury.
- Author
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Zhao Y, Fan S, Zhu H, Zhao Q, Fang Z, Xu D, Lin W, Lin L, Hu X, Wu G, Min J, and Liang G
- Subjects
- Animals, Humans, Male, Mice, Deubiquitinating Enzymes metabolism, Deubiquitinating Enzymes genetics, Diabetes Mellitus, Experimental metabolism, Diabetes Mellitus, Experimental pathology, Diabetes Mellitus, Experimental complications, HEK293 Cells, Mice, Inbred C57BL, Phosphorylation, Ubiquitin-Specific Proteases metabolism, Ubiquitin-Specific Proteases genetics, Diabetic Nephropathies metabolism, Diabetic Nephropathies pathology, Diabetic Nephropathies genetics, Inflammation metabolism, Inflammation pathology, Inflammation genetics, MAP Kinase Kinase Kinases metabolism, MAP Kinase Kinase Kinases genetics, Mice, Knockout, Podocytes metabolism, Podocytes pathology, Ubiquitination
- Abstract
Recent studies have shown the crucial role of podocyte injury in the development of diabetic kidney disease (DKD). Deubiquitinating modification of proteins is widely involved in the occurrence and development of diseases. Here, we explore the role and regulating mechanism of a deubiquitinating enzyme, OTUD5, in podocyte injury and DKD. RNA-seq analysis indicates a significantly decreased expression of OTUD5 in HG/PA-stimulated podocytes. Podocyte-specific Otud5 knockout exacerbates podocyte injury and DKD in both type 1 and type 2 diabetic mice. Furthermore, AVV9-mediated OTUD5 overexpression in podocytes shows a therapeutic effect against DKD. Mass spectrometry and co-immunoprecipitation experiments reveal an inflammation-regulating protein, TAK1, as the substrate of OTUD5 in podocytes. Mechanistically, OTUD5 deubiquitinates K63-linked TAK1 at the K158 site through its active site C224, which subsequently prevents the phosphorylation of TAK1 and reduces downstream inflammatory responses in podocytes. Our findings show an OTUD5-TAK1 axis in podocyte inflammation and injury and highlight the potential of OTUD5 as a promising therapeutic target for DKD., (© 2024. The Author(s).)
- Published
- 2024
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40. Light regulates nuclear detainment of intron-retained transcripts through COP1-spliceosome to modulate photomorphogenesis.
- Author
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Zhou H, Zeng H, Yan T, Chen S, Fu Y, Qin G, Zhao X, Heng Y, Li J, Lin F, Xu D, Wei N, and Deng XW
- Subjects
- Seedlings growth & development, Seedlings genetics, Seedlings radiation effects, Seedlings metabolism, Alternative Splicing, Ubiquitination, Arabidopsis Proteins genetics, Arabidopsis Proteins metabolism, Arabidopsis genetics, Arabidopsis growth & development, Arabidopsis radiation effects, Arabidopsis metabolism, Introns genetics, Gene Expression Regulation, Plant radiation effects, Spliceosomes metabolism, Light, Ubiquitin-Protein Ligases metabolism, Ubiquitin-Protein Ligases genetics, Cell Nucleus metabolism
- Abstract
Intron retention (IR) is the most common alternative splicing event in Arabidopsis. An increasing number of studies have demonstrated the major role of IR in gene expression regulation. The impacts of IR on plant growth and development and response to environments remain underexplored. Here, we found that IR functions directly in gene expression regulation on a genome-wide scale through the detainment of intron-retained transcripts (IRTs) in the nucleus. Nuclear-retained IRTs can be kept away from translation through this mechanism. COP1-dependent light modulation of the IRTs of light signaling genes, such as PIF4, RVE1, and ABA3, contribute to seedling morphological development in response to changing light conditions. Furthermore, light-induced IR changes are under the control of the spliceosome, and in part through COP1-dependent ubiquitination and degradation of DCS1, a plant-specific spliceosomal component. Our data suggest that light regulates the activity of the spliceosome and the consequent IRT nucleus detainment to modulate photomorphogenesis through COP1., (© 2024. The Author(s).)
- Published
- 2024
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41. Giant dielectric tunability in ferroelectric ceramics with ultralow loss by ion substitution design.
- Author
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Li R, Xu D, Du C, Ma Q, Zhang F, Liang X, Wang D, Shi Z, Liu W, and Zhou D
- Abstract
Due to their responsiveness to modulation by external direct current fields, dielectric tunable materials are extensively utilized in integrated components, such as ferroelectric phase shifters. Barium strontium titanate ceramics have been considered the most potential tunable materials for a long time. However, the significant dielectric loss and high voltage drive have limited their further applications. Recently, Bi
6 Ti5 WO22 ceramic has regained attention for its high dielectric tunability with low loss. In this study, we judiciously introduce Nb5+ with a larger ionic radius, replacing Ti4+ and W6+ . This successful substitution enables the modulation of the phase transition temperature of Bi6 Ti5 WO22 ceramics to room temperature, resulting in superior tunable properties. Specifically, the 0.7Bi6 Ti5 WO22 -0.3Bi6 Ti4 Nb2 O22 ceramics exhibit giant tunability (~75.6%) with ultralow loss (<0.002) under a low electric field (1.5 kV/mm). This tunability is twice that of barium strontium titanate ceramics with a similar dielectric constant and only one-tenth of the loss. Neutron powder diffraction and transmission-electron-microscopy illustrate the nanodomains and micro-strains influenced by ion substitution. Density functional theory simulation calculations reveal the contribution of ion substitution to polarization. The research provides an ideal substitute for tunable material and a general strategy for adjusting phase transition temperature to improve dielectric properties., (© 2024. The Author(s).)- Published
- 2024
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42. Broadband nonlinear modulation of incoherent light using a transparent optoelectronic neuron array.
- Author
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Zhang D, Xu D, Li Y, Luo Y, Hu J, Zhou J, Zhang Y, Zhou B, Wang P, Li X, Bai B, Ren H, Wang L, Zhang A, Jarrahi M, Huang Y, Ozcan A, and Duan X
- Abstract
Nonlinear optical processing of ambient natural light is highly desired for computational imaging and sensing. Strong optical nonlinear response under weak broadband incoherent light is essential for this purpose. By merging 2D transparent phototransistors (TPTs) with liquid crystal (LC) modulators, we create an optoelectronic neuron array that allows self-amplitude modulation of spatially incoherent light, achieving a large nonlinear contrast over a broad spectrum at orders-of-magnitude lower intensity than achievable in most optical nonlinear materials. We fabricated a 10,000-pixel array of optoelectronic neurons, and experimentally demonstrated an intelligent imaging system that instantly attenuates intense glares while retaining the weaker-intensity objects captured by a cellphone camera. This intelligent glare-reduction is important for various imaging applications, including autonomous driving, machine vision, and security cameras. The rapid nonlinear processing of incoherent broadband light might also find applications in optical computing, where nonlinear activation functions for ambient light conditions are highly sought., (© 2024. The Author(s).)
- Published
- 2024
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43. Climate change will reduce North American inland wetland areas and disrupt their seasonal regimes.
- Author
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Xu D, Bisht G, Tan Z, Sinha E, Di Vittorio AV, Zhou T, Ivanov VY, and Leung LR
- Abstract
Climate change can alter wetland extent and function, but such impacts are perplexing. Here, changes in wetland characteristics over North America from 25° to 53° North are projected under two climate scenarios using a state-of-the-science Earth system model. At the continental scale, annual wetland area decreases by ~10% (6%-14%) under the high emission scenario, but spatiotemporal changes vary, reaching up to ±50%. As the dominant driver of these changes shifts from precipitation to temperature in the higher emission scenario, wetlands undergo substantial drying during summer season when biotic processes peak. The projected disruptions to wetland seasonality cycles imply further impacts on biodiversity in major wetland habitats of upper Mississippi, Southeast Canada, and the Everglades. Furthermore, wetlands are projected to significantly shrink in cold regions due to the increased infiltration as warmer temperature reduces soil ice. The large dependence of the projections on climate change scenarios underscores the importance of emission mitigation to sustaining wetland ecosystems in the future., (© 2024. Battelle Memorial Institute Lawrence Livermore National Laboratory and University of Michigan.)
- Published
- 2024
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44. Well-defined diatomic catalysis for photosynthesis of C 2 H 4 from CO 2 .
- Author
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Xie Z, Xu S, Li L, Gong S, Wu X, Xu D, Mao B, Zhou T, Chen M, Wang X, Shi W, and Song S
- Abstract
Owing to the specific electronic-redistribution and spatial proximity, diatomic catalysts (DACs) have been identified as principal interest for efficient photoconversion of CO
2 into C2 H4 . However, the predominant bottom-up strategy for DACs synthesis has critically constrained the development of highly ordered DACs due to the random distribution of heteronuclear atoms, which hinders the optimization of catalytic performance and the exploration of actual reaction mechanism. Here, an up-bottom ion-cutting architecture is proposed to fabricate the well-defined DACs, and the superior spatial proximity of CuAu diatomics (DAs) decorated TiO2 (CuAu-DAs-TiO2 ) is successfully constructed due to the compact heteroatomic spacing (2-3 Å). Owing to the profoundly low C-C coupling energy barrier of CuAu-DAs-TiO2 , a considerable C2 H4 production with superior sustainability is achieved. Our discovery inspires a novel up-bottom strategy for the fabrication of well-defined DACs to motivate optimization of catalytic performance and distinct deduction of heteroatom synergistically catalytic mechanism., (© 2024. The Author(s).)- Published
- 2024
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- View/download PDF
45. Low-frequency vibrational density of states of ordinary and ultra-stable glasses.
- Author
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Xu D, Zhang S, Tong H, Wang L, and Xu N
- Abstract
A remarkable feature of disordered solids distinct from crystals is the violation of the Debye scaling law of the low-frequency vibrational density of states. Because the low-frequency vibration is responsible for many properties of solids, it is crucial to elucidate it for disordered solids. Numerous recent studies have suggested power-law scalings of the low-frequency vibrational density of states, but the scaling exponent is currently under intensive debate. Here, by classifying disordered solids into stable and unstable ones, we find two distinct and robust scaling exponents for non-phononic modes at low frequencies. Using the competition of these two scalings, we clarify the variation of the scaling exponent and hence reconcile the debate. Via the study of both ordinary and ultra-stable glasses, our work reveals a comprehensive picture of the low-frequency vibration of disordered solids and sheds light on the low-frequency vibrational features of ultra-stable glasses on approaching the ideal glass., (© 2024. The Author(s).)
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- 2024
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46. In-situ formatting donor-acceptor polymer with giant dipole moment and ultrafast exciton separation.
- Author
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Cheng C, Yu J, Xu D, Wang L, Liang G, Zhang L, and Jaroniec M
- Abstract
Donor-acceptor semiconducting polymers present countless opportunities for application in photocatalysis. Previous studies have showcased their advantages through direct bottom-up methods. Unfortunately, these approaches often involve harsh reaction conditions, overlooking the impact of uncontrolled polymerization degrees on photocatalysis. Besides, the mechanism behind the separation of electron-hole pairs (excitons) in donor-acceptor polymers remains elusive. This study presents a post-synthetic method involving the light-induced transformation of the building blocks of hyper-cross-linked polymers from donor-carbon-donor to donor-carbon-acceptor states, resulting in a polymer with a substantial intramolecular dipole moment. Thus, excitons are efficiently separated in the transformed polymer. The utility of this strategy is exemplified by the enhanced photocatalytic hydrogen peroxide synthesis. Encouragingly, our observations reveal the formation of intramolecular charge transfer states using time-resolved techniques, confirming transient exciton behavior involving separation and relaxation. This light-induced method not only guides the development of highly efficient donor-acceptor polymer photocatalysts but also applies to various fields, including organic solar cells, light-emitting diodes, and sensors., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
47. Aneuploid embryonic stem cells drive teratoma metastasis.
- Author
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Xiao R, Xu D, Zhang M, Chen Z, Cheng L, Du S, Lu M, Zhou T, Li R, Bai F, and Huang Y
- Subjects
- Humans, Animals, Mice, Proteasome Endopeptidase Complex, Aneuploidy, Embryonic Stem Cells, DNA Copy Number Variations, Teratoma genetics, Teratoma pathology
- Abstract
Aneuploidy, a deviation of the chromosome number from euploidy, is one of the hallmarks of cancer. High levels of aneuploidy are generally correlated with metastasis and poor prognosis in cancer patients. However, the causality of aneuploidy in cancer metastasis remains to be explored. Here we demonstrate that teratomas derived from aneuploid murine embryonic stem cells (ESCs), but not from isogenic diploid ESCs, disseminated to multiple organs, for which no additional copy number variations were required. Notably, no cancer driver gene mutations were identified in any metastases. Aneuploid circulating teratoma cells were successfully isolated from peripheral blood and showed high capacities for migration and organ colonization. Single-cell RNA sequencing of aneuploid primary teratomas and metastases identified a unique cell population with high stemness that was absent in diploid ESCs-derived teratomas. Further investigation revealed that aneuploid cells displayed decreased proteasome activity and overactivated endoplasmic reticulum (ER) stress during differentiation, thereby restricting the degradation of proteins produced from extra chromosomes in the ESC state and causing differentiation deficiencies. Noticeably, both proteasome activator Oleuropein and ER stress inhibitor 4-PBA can effectively inhibit aneuploid teratoma metastasis., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
48. Enhancing aortic valve drug delivery with PAR2-targeting magnetic nano-cargoes for calcification alleviation.
- Author
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Chen J, Ren T, Xie L, Hu H, Li X, Maitusong M, Zhou X, Hu W, Xu D, Qian Y, Cheng S, Yu K, Wang JA, and Liu X
- Subjects
- Mice, Animals, Aortic Valve metabolism, Osteogenesis, Cells, Cultured, Magnetic Phenomena, Aortic Valve Stenosis drug therapy, Calcinosis drug therapy, Calcinosis metabolism
- Abstract
Calcific aortic valve disease is a prevalent cardiovascular disease with no available drugs capable of effectively preventing its progression. Hence, an efficient drug delivery system could serve as a valuable tool in drug screening and potentially enhance therapeutic efficacy. However, due to the rapid blood flow rate associated with aortic valve stenosis and the lack of specific markers, achieving targeted drug delivery for calcific aortic valve disease has proved to be challenging. Here we find that protease-activated-receptor 2 (PAR2) expression is up-regulated on the plasma membrane of osteogenically differentiated valvular interstitial cells. Accordingly, we develop a magnetic nanocarrier functionalized with PAR2-targeting hexapeptide for dual-active targeting drug delivery. We show that the nanocarriers effectively deliver XCT790-an anti-calcification drug-to the calcified aortic valve under extra magnetic field navigation. We demonstrate that the nano-cargoes consequently inhibit the osteogenic differentiation of valvular interstitial cells, and alleviate aortic valve calcification and stenosis in a high-fat diet-fed low-density lipoprotein receptor-deficient (Ldlr
-/- ) mouse model. This work combining PAR2- and magnetic-targeting presents an effective targeted drug delivery system for treating calcific aortic valve disease in a murine model, promising future clinical translation., (© 2024. The Author(s).)- Published
- 2024
- Full Text
- View/download PDF
49. MarsGT: Multi-omics analysis for rare population inference using single-cell graph transformer.
- Author
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Wang X, Duan M, Li J, Ma A, Xin G, Xu D, Li Z, Liu B, and Ma Q
- Subjects
- Humans, Animals, Mice, Electric Power Supplies, Ependymoglial Cells, Immunotherapy, Multiomics, B-Lymphocytes
- Abstract
Rare cell populations are key in neoplastic progression and therapeutic response, offering potential intervention targets. However, their computational identification and analysis often lag behind major cell types. To fill this gap, we introduce MarsGT: Multi-omics Analysis for Rare population inference using a Single-cell Graph Transformer. It identifies rare cell populations using a probability-based heterogeneous graph transformer on single-cell multi-omics data. MarsGT outperforms existing tools in identifying rare cells across 550 simulated and four real human datasets. In mouse retina data, it reveals unique subpopulations of rare bipolar cells and a Müller glia cell subpopulation. In human lymph node data, MarsGT detects an intermediate B cell population potentially acting as lymphoma precursors. In human melanoma data, it identifies a rare MAIT-like population impacted by a high IFN-I response and reveals the mechanism of immunotherapy. Hence, MarsGT offers biological insights and suggests potential strategies for early detection and therapeutic intervention of disease., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
50. Inflammasome activity is controlled by ZBTB16-dependent SUMOylation of ASC.
- Author
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Dong D, Du Y, Fei X, Yang H, Li X, Yang X, Ma J, Huang S, Ma Z, Zheng J, Chan DW, Shi L, Li Y, Irving AT, Yuan X, Liu X, Ni P, Hu Y, Meng G, Peng Y, Sadler A, and Xu D
- Subjects
- Animals, Mice, CARD Signaling Adaptor Proteins genetics, CARD Signaling Adaptor Proteins metabolism, Caspase 1 metabolism, Protein Binding, Sumoylation, Inflammasomes metabolism, NLR Family, Pyrin Domain-Containing 3 Protein genetics, NLR Family, Pyrin Domain-Containing 3 Protein metabolism
- Abstract
Inflammasome activity is important for the immune response and is instrumental in numerous clinical conditions. Here we identify a mechanism that modulates the central Caspase-1 and NLR (Nod-like receptor) adaptor protein ASC (apoptosis-associated speck-like protein containing a CARD). We show that the function of ASC in assembling the inflammasome is controlled by its modification with SUMO (small ubiquitin-like modifier) and identify that the nuclear ZBTB16 (zinc-finger and BTB domain-containing protein 16) promotes this SUMOylation. The physiological significance of this activity is demonstrated through the reduction of acute inflammatory pathogenesis caused by a constitutive hyperactive inflammasome by ablating ZBTB16 in a mouse model of Muckle-Wells syndrome. Together our findings identify an further mechanism by which ZBTB16-dependent control of ASC SUMOylation assembles the inflammasome to promote this pro-inflammatory response., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
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