5 results on '"The J. Craig Venter Institute"'
Search Results
2. Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework
- Author
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Bram Vrancken, Alexander A. Fisher, Simon Dellicour, Sebastian Lequime, Louis du Plessis, Karthik Gangavarapu, Kristian G. Andersen, Mandev S. Gill, Nathan D. Grubaugh, Marius Gilbert, Paul Bastide, Oliver G. Pybus, Philippe Lemey, Marc A. Suchard, Nathaniel L. Matteson, Yi Tan, Martha I. Nelson, Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, KU Leuven (KU Leuven), Spatial Epidemiology Lab (SpELL), Université libre de Bruxelles (ULB), Department of Immunology and Microbiology, The Scripps Research Institute, Scripps Research Institute, Infectious Diseases Group, J. Craig Venter Institute, Department of Medicine, Vanderbilt University [Nashville], Department of Zoology, University of Oxford, 11a Mansfield Road, Oxford, OX1 3SZ, UK, Department of Biomathematics, David Geffen School of Medicine at UCLA, University of California, Los Angeles, University of California [Los Angeles] (UCLA), University of California-University of California, Fogarty International Center, National Institutes of Health, Bethesda, MD, 20894, USA, Fielding School of Public Health, Department of Human Genetics, David Geffen School of Medicine at UCLA, University of California, Los Angeles, The Scripps Translational Science Institute and The Scripps Research Institute, Department of Epidemiology of Microbial Diseases, and Yale School of Public Health (YSPH) more...
- Subjects
0106 biological sciences ,0301 basic medicine ,viruses ,General Physics and Astronomy ,01 natural sciences ,Flyway ,2.2 Factors relating to the physical environment ,Viral ,Aetiology ,lcsh:Science ,Phylogeny ,education.field_of_study ,[STAT.AP]Statistics [stat]/Applications [stat.AP] ,Multidisciplinary ,Genome ,Viral Epidemiology ,West nile virus ,Sciences bio-médicales et agricoles ,3. Good health ,Phylogenetics ,Phylogeography ,Infectious Diseases ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,Molecular ecology ,Infection ,West Nile virus ,Viral epidemiology ,Science ,Population ,Wildlife ,Genome, Viral ,Biology ,Environment ,010603 evolutionary biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,Vaccine Related ,03 medical and health sciences ,Rare Diseases ,Biodefense ,Genetics ,Animals ,Humans ,education ,Ecosystem ,Ecological epidemiology ,Genetic diversity ,Bird Diseases ,Prevention ,Genetic Variation ,General Chemistry ,Vector-Borne Diseases ,Emerging Infectious Diseases ,Good Health and Well Being ,030104 developmental biology ,Evolutionary biology ,North America ,Biological dispersal ,lcsh:Q ,West Nile Fever - Abstract
Computational analyses of pathogen genomes are increasingly used to unravel the dispersal history and transmission dynamics of epidemics. Here, we show how to go beyond historical reconstructions and use spatially-explicit phylogeographic and phylodynamic approaches to formally test epidemiological hypotheses. We illustrate our approach by focusing on the West Nile virus (WNV) spread in North America that has substantially impacted public, veterinary, and wildlife health. We apply an analytical workflow to a comprehensive WNV genome collection to test the impact of environmental factors on the dispersal of viral lineages and on viral population genetic diversity through time. We find that WNV lineages tend to disperse faster in areas with higher temperatures and we identify temporal variation in temperature as a main predictor of viral genetic diversity through time. By contrasting inference with simulation, we find no evidence for viral lineages to preferentially circulate within the same migratory bird flyway, suggesting a substantial role for non-migratory birds or mosquito dispersal along the longitudinal gradient., SCOPUS: ar.j, info:eu-repo/semantics/published more...
- Published
- 2020
- Full Text
- View/download PDF
Catalog
3. Human antibodies targeting Zika virus NS1 provide protection against disease in a mouse model.
- Author
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Bailey MJ, Duehr J, Dulin H, Broecker F, Brown JA, Arumemi FO, Bermúdez González MC, Leyva-Grado VH, Evans MJ, Simon V, Lim JK, Krammer F, Hai R, Palese P, and Tan GS
- Subjects
- Animals, Antibodies, Monoclonal metabolism, Antibodies, Monoclonal pharmacology, Antibodies, Viral pharmacology, Chlorocebus aethiops, Disease Models, Animal, HEK293 Cells, Humans, Jurkat Cells, Mice, Mice, Knockout, Neutralization Tests, Recombinant Proteins metabolism, Recombinant Proteins pharmacology, STAT2 Transcription Factor genetics, Vero Cells, Viral Nonstructural Proteins metabolism, Zika Virus metabolism, Antibodies, Viral metabolism, Receptors, IgG metabolism, Viral Nonstructural Proteins immunology, Viral Vaccines immunology, Zika Virus immunology, Zika Virus Infection prevention & control
- Abstract
Zika virus is a mosquito-borne flavivirus closely related to dengue virus that can cause severe disease in humans, including microcephaly in newborns and Guillain-Barré syndrome in adults. Specific treatments and vaccines for Zika virus are not currently available. Here, we isolate and characterize four monoclonal antibodies (mAbs) from an infected patient that target the non-structural protein NS1. We show that while these antibodies are non-neutralizing, NS1-specific mAbs can engage FcγR without inducing antibody dependent enhancement (ADE) of infection in vitro. Moreover, we demonstrate that mAb AA12 has protective efficacy against lethal challenges of African and Asian lineage strains of Zika virus in Stat2
-/- mice. Protection is Fc-dependent, as a mutated antibody unable to activate known Fc effector functions or complement is not protective in vivo. This study highlights the importance of the ZIKV NS1 protein as a potential vaccine antigen. more...- Published
- 2018
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4. Non-neutralizing antibodies elicited by recombinant Lassa-Rabies vaccine are critical for protection against Lassa fever.
- Author
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Abreu-Mota T, Hagen KR, Cooper K, Jahrling PB, Tan G, Wirblich C, Johnson RF, and Schnell MJ
- Subjects
- 3T3 Cells, Animals, Antibody-Dependent Cell Cytotoxicity immunology, Cell Membrane metabolism, Genetic Vectors metabolism, Glucosides, Glycoproteins metabolism, Guinea Pigs, Immunity, Humoral, Immunization, Immunoglobulin G metabolism, Lassa Fever virology, Lassa virus pathogenicity, Lipid A, Macrophages metabolism, Mice, Mice, Inbred C57BL, Receptors, IgG metabolism, Virion metabolism, Virulence, Antibodies, Neutralizing immunology, Antibodies, Viral immunology, Lassa Fever immunology, Lassa Fever prevention & control, Lassa virus immunology, Rabies Vaccines immunology, Vaccines, Synthetic immunology
- Abstract
Lassa fever (LF), caused by Lassa virus (LASV), is a viral hemorrhagic fever for which no approved vaccine or potent antiviral treatment is available. LF is a WHO priority disease and, together with rabies, a major health burden in West Africa. Here we present the development and characterization of an inactivated recombinant LASV and rabies vaccine candidate (LASSARAB) that expresses a codon-optimized LASV glycoprotein (coGPC) and is adjuvanted by a TLR-4 agonist (GLA-SE). LASSARAB elicits lasting humoral response against LASV and RABV in both mouse and guinea pig models, and it protects both guinea pigs and mice against LF. We also demonstrate a previously unexplored role for non-neutralizing LASV GPC-specific antibodies as a major mechanism of protection by LASSARAB against LF through antibody-dependent cellular functions. Overall, these findings demonstrate an effective inactivated LF vaccine and elucidate a novel humoral correlate of protection for LF. more...
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- 2018
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5. Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes.
- Author
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Lorenzi H, Khan A, Behnke MS, Namasivayam S, Swapna LS, Hadjithomas M, Karamycheva S, Pinney D, Brunk BP, Ajioka JW, Ajzenberg D, Boothroyd JC, Boyle JP, Dardé ML, Diaz-Miranda MA, Dubey JP, Fritz HM, Gennari SM, Gregory BD, Kim K, Saeij JP, Su C, White MW, Zhu XQ, Howe DK, Rosenthal BM, Grigg ME, Parkinson J, Liu L, Kissinger JC, Roos DS, and Sibley LD more...
- Subjects
- Conserved Sequence, DNA, Protozoan genetics, Gene Expression Regulation physiology, Phylogeny, Polymorphism, Single Nucleotide, Protozoan Proteins genetics, Protozoan Proteins metabolism, RNA, Messenger genetics, RNA, Messenger metabolism, Synteny, Virulence, Genome, Protozoan, Toxoplasma genetics, Toxoplasma pathogenicity
- Abstract
Toxoplasma gondii is among the most prevalent parasites worldwide, infecting many wild and domestic animals and causing zoonotic infections in humans. T. gondii differs substantially in its broad distribution from closely related parasites that typically have narrow, specialized host ranges. To elucidate the genetic basis for these differences, we compared the genomes of 62 globally distributed T. gondii isolates to several closely related coccidian parasites. Our findings reveal that tandem amplification and diversification of secretory pathogenesis determinants is the primary feature that distinguishes the closely related genomes of these biologically diverse parasites. We further show that the unusual population structure of T. gondii is characterized by clade-specific inheritance of large conserved haploblocks that are significantly enriched in tandemly clustered secretory pathogenesis determinants. The shared inheritance of these conserved haploblocks, which show a different ancestry than the genome as a whole, may thus influence transmission, host range and pathogenicity. more...
- Published
- 2016
- Full Text
- View/download PDF
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