1. Conformational changes in Lassa virus L protein associated with promoter binding and RNA synthesis activity
- Author
-
Maria Rosenthal, S. Guenther, Kay Gruenewald, Sigurdur R. Thorkelsson, Morlin Milewski, Dominik Vogel, Tomáš Kouba, Carola Busch, Emmanuelle R. J. Quemin, Harry M. Williams, and Stephen Cusack
- Subjects
Models, Molecular ,Protein Conformation, alpha-Helical ,Transcription, Genetic ,viruses ,Mutant ,Amino Acid Motifs ,General Physics and Astronomy ,Gene Expression ,medicine.disease_cause ,Genome ,Substrate Specificity ,Endonuclease ,chemistry.chemical_compound ,Transcription (biology) ,Cryoelectron microscopy ,RNA polymerase ,Catalytic Domain ,Nucleotide ,Cloning, Molecular ,Promoter Regions, Genetic ,chemistry.chemical_classification ,Multidisciplinary ,biology ,Chemistry ,Recombinant Proteins ,Enzymes ,RNA, Viral ,Protein Binding ,Science ,Genetic Vectors ,General Biochemistry, Genetics and Molecular Biology ,Article ,Viral Proteins ,medicine ,Escherichia coli ,Protein Interaction Domains and Motifs ,Lassa virus ,Messenger RNA ,Arenavirus ,RNA ,Active site ,General Chemistry ,biology.organism_classification ,RNA-Dependent RNA Polymerase ,Molecular biology ,Arenaviruses ,Duplex (building) ,biology.protein ,Protein Conformation, beta-Strand - Abstract
Lassa virus is endemic in West Africa and can cause severe hemorrhagic fever. The viral L protein transcribes and replicates the RNA genome via its RNA-dependent RNA polymerase activity. Here, we present nine cryo-EM structures of the L protein in the apo-, promoter-bound pre-initiation and active RNA synthesis states. We characterize distinct binding pockets for the conserved 3’ and 5’ promoter RNAs and show how full-promoter binding induces a distinct pre-initiation conformation. In the apo- and early elongation states, the endonuclease is inhibited by two distinct L protein peptides, whereas in the pre-initiation state it is uninhibited. In the early elongation state, a template-product duplex is bound in the active site cavity together with an incoming non-hydrolysable nucleotide and the full C-terminal region of the L protein, including the putative cap-binding domain, is well-ordered. These data advance our mechanistic understanding of how this flexible and multifunctional molecular machine is activated., The L protein of segmented, negative strand RNA viruses contains the RNA-dependent RNA polymerase essential for virus amplification. Here, the authors report cryoEM structures of the Lassa virus L protein in active, RNA-bound states, and provide mechanistic insights.
- Published
- 2021