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Start Over Author "Paulson, Joseph N." Journal nature communications
5 results on '"Paulson, Joseph N."'

2. Author Correction: Transcriptomic profiles and 5-year results from the randomized CLL14 study of venetoclax plus obinutuzumab versus chlorambucil plus obinutuzumab in chronic lymphocytic leukemia

Author

Al-Sawaf, Othman, Zhang, Can, Jin, Hyun Yong, Robrecht, Sandra, Choi, Yoonha, Balasubramanian, Sandhya, Kotak, Alex, Chang, Yi Meng, Fink, Anna Maria, Tausch, Eugen, Schneider, Christof, Ritgen, Matthias, Kreuzer, Karl-Anton, Chyla, Brenda, Paulson, Joseph N., Pallasch, Christian P., Frenzel, Lukas P., Peifer, Martin, Eichhorst, Barbara, Stilgenbauer, Stephan, Jiang, Yanwen, Hallek, Michael, and Fischer, Kirsten

Published
2023
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3. Transcriptomic profiles and 5-year results from the randomized CLL14 study of venetoclax plus obinutuzumab versus chlorambucil plus obinutuzumab in chronic lymphocytic leukemia

Author

Al-Sawaf, Othman, Zhang, Can, Jin, Hyun Yong, Robrecht, Sandra, Choi, Yoonha, Balasubramanian, Sandhya, Kotak, Alex, Chang, Yi Meng, Fink, Anna Maria, Tausch, Eugen, Schneider, Christof, Ritgen, Matthias, Kreuzer, Karl-Anton, Chyla, Brenda, Paulson, Joseph N., Pallasch, Christian P., Frenzel, Lukas P., Peifer, Martin, Eichhorst, Barbara, Stilgenbauer, Stephan, Jiang, Yanwen, Hallek, Michael, and Fischer, Kirsten

Published
2023
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4. Disentangling the genetic basis of rhizosphere microbiome assembly in tomato

Author

Oyserman, Ben O., Flores, Stalin Sarango, Griffioen, Thom, Pan, Xinya, van der Wijk, Elmar, Pronk, Lotte, Lokhorst, Wouter, Nurfikari, Azkia, Paulson, Joseph N., Movassagh, Mercedeh, Stopnisek, Nejc, Kupczok, Anne, Cordovez, Viviane, Carrión, Víctor J., Ligterink, Wilco, Snoek, Basten L., Medema, Marnix H., and Raaijmakers, Jos M.

Published
2022
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5. Disentangling the genetic basis of rhizosphere microbiome assembly in tomato

Author

Oyserman, Ben O, Flores, Stalin Sarango, Griffioen, Thom, Pan, Xinya, van der Wijk, Elmar, Pronk, Lotte, Lokhorst, Wouter, Nurfikari, Azkia, Paulson, Joseph N, Movassagh, Mercedeh, Stopnisek, Nejc, Kupczok, Anne, Cordovez, Viviane, Carrión, Víctor J, Ligterink, Wilco, Snoek, Basten L, Medema, Marnix H, Raaijmakers, Jos M, Sub Bioinformatics, Theoretical Biology and Bioinformatics, Microbial Ecology (ME), Sub Bioinformatics, and Theoretical Biology and Bioinformatics

Subjects
Epidemiology, Bioinformatica & Diermodellen, Bioinformatics, Kwantitatieve Veterinaire Epidemiologie, Iron, General Physics and Astronomy, General Biochemistry, Genetics and Molecular Biology, Solanum lycopersicum, Bio-informatics & Animal models, Bioinformatica, Life Science, Microbiota/genetics, Epidemiology, Bio-informatics & Animal models, Plants/metabolism, Host Pathogen Interaction & Diagnostics, Epidemiologie, Multidisciplinary, Lycopersicon esculentum/metabolism, Microbiota, Bacteriologie, Quantitative Veterinary Epidemiology, Bacteriology, General Chemistry, Bacteriology, Host Pathogen Interaction & Diagnostics, Plants, Host Pathogen Interactie & Diagnostiek, Plant Breeding, Epidemiologie, Bioinformatica & Diermodellen, Bacteriologie, Host Pathogen Interactie & Diagnostiek, Rhizosphere, WIAS, EPS, Iron/metabolism
Abstract

Microbiomes play a pivotal role in plant growth and health, but the genetic factors involved in microbiome assembly remain largely elusive. Here, we map the molecular features of the rhizosphere microbiome as quantitative traits of a diverse hybrid population of wild and domesticated tomato. Gene content analysis of prioritized tomato quantitative trait loci suggests a genetic basis for differential recruitment of various rhizobacterial lineages, including a Streptomyces-associated 6.31 Mbp region harboring tomato domestication sweeps and encoding, among others, the iron regulator FIT and the water channel aquaporin SlTIP2.3. Within metagenome-assembled genomes of root-associated Streptomyces and Cellvibrio, we identify bacterial genes involved in metabolism of plant polysaccharides, iron, sulfur, trehalose, and vitamins, whose genetic variation associates with specific tomato QTLs. By integrating ‘microbiomics’ and quantitative plant genetics, we pinpoint putative plant and reciprocal rhizobacterial traits underlying microbiome assembly, thereby providing a first step towards plant-microbiome breeding programs.

Published
2021

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