9 results on '"Deok Ho Kim"'
Search Results
2. Switch-like enhancement of epithelial-mesenchymal transition by YAP through feedback regulation of WT1 and Rho-family GTPases
- Author
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JinSeok Park, Deok-Ho Kim, Sagar R. Shah, Hong-Nam Kim, Kshitiz, Peter Kim, Alfredo Quiñones-Hinojosa, and Andre Levchenko
- Subjects
Science - Abstract
Reorganisation of the extracellular matrix (ECM) controls processes involving epithelial-mesenchymal transition (EMT). Here, the authors show that EMT occurring in epithelial cells on a fabricated nano-engineered cell adhesion surface is triggered by mechanical cues from the ECM.
- Published
- 2019
- Full Text
- View/download PDF
3. Anisotropic forces from spatially constrained focal adhesions mediate contact guidance directed cell migration
- Author
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Arja Ray, Oscar Lee, Zaw Win, Rachel M. Edwards, Patrick W. Alford, Deok-Ho Kim, and Paolo P. Provenzano
- Subjects
Science - Abstract
Contact guidance on aligned substrates leads to directed cell migration through a poorly defined mechanism. Here the authors show that alignment of adhesion structures and F-actin generates anisotropic traction stress to drive directional migration, and cell-cell contact reduces force orientation and directional response.
- Published
- 2017
- Full Text
- View/download PDF
4. Author Correction: TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes
- Author
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Jason W. Miklas, Elisa Clark, Shiri Levy, Damien Detraux, Andrea Leonard, Kevin Beussman, Megan R. Showalter, Alec T. Smith, Peter Hofsteen, Xiulan Yang, Jesse Macadangdang, Tuula Manninen, Daniel Raftery, Anup Madan, Anu Suomalainen, Deok-Ho Kim, Charles E. Murry, Oliver Fiehn, Nathan J. Sniadecki, Yuliang Wang, and Hannele Ruohola-Baker
- Subjects
Science - Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
- Published
- 2020
- Full Text
- View/download PDF
5. TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes
- Author
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Shiri Levy, Yuliang Wang, Andrea Leonard, Hannele Ruohola-Baker, Elisa C. Clark, Tuula Manninen, Kevin M. Beussman, Jason W. Miklas, Deok Ho Kim, Oliver Fiehn, Nathan J. Sniadecki, Charles E. Murry, Daniel Raftery, Anup Madan, Xiulan Yang, Jesse Macadangdang, Alec S.T. Smith, Damien Detraux, Anu Suomalainen, Megan R. Showalter, Peter Hofsteen, STEMM - Stem Cells and Metabolism Research Program, University of Helsinki, Research Programs Unit, HUS Helsinki and Uusimaa Hospital District, University Management, Anu Wartiovaara / Principal Investigator, and Neuroscience Center
- Subjects
0301 basic medicine ,Patch-Clamp Techniques ,Human Embryonic Stem Cells ,General Physics and Astronomy ,Mitochondrial trifunctional protein deficiency ,Mitochondrial trifunctional protein ,Mitochondrion ,Cardiovascular ,Fatty acid beta-oxidation ,chemistry.chemical_compound ,0302 clinical medicine ,Cardiolipin ,2.1 Biological and endogenous factors ,Myocytes, Cardiac ,RNA-Seq ,Aetiology ,lcsh:Science ,GENE-EXPRESSION ,Pediatric ,chemistry.chemical_classification ,Multidisciplinary ,biology ,Mitochondrial Trifunctional Protein ,Fatty Acids ,3. Good health ,Cell biology ,Mitochondria ,Electrophysiology ,Mechanisms of disease ,Cardiovascular diseases ,PLURIPOTENT STEM-CELL ,lipids (amino acids, peptides, and proteins) ,Cardiac ,Oxidation-Reduction ,Cardiolipins ,Science ,CARDIAC DIFFERENTIATION ,alpha Subunit ,General Biochemistry, Genetics and Molecular Biology ,MATURATION ,Cell Line ,BARTH-SYNDROME ,03 medical and health sciences ,REVEALS ,Genetics ,medicine ,Humans ,Author Correction ,Homeodomain Proteins ,Myocytes ,Monolysocardiolipin ,MICRORNA ,Tumor Suppressor Proteins ,Fatty acid ,General Chemistry ,MASS-SPECTROMETRY ,Sudden infant death syndrome ,medicine.disease ,HUMAN HEART ,MicroRNAs ,030104 developmental biology ,chemistry ,biology.protein ,lcsh:Q ,Calcium ,3111 Biomedicine ,Mitochondrial Trifunctional Protein, alpha Subunit ,030217 neurology & neurosurgery - Abstract
Mitochondrial trifunctional protein deficiency, due to mutations in hydratase subunit A (HADHA), results in sudden infant death syndrome with no cure. To reveal the disease etiology, we generated stem cell-derived cardiomyocytes from HADHA-deficient hiPSCs and accelerated their maturation via an engineered microRNA maturation cocktail that upregulated the epigenetic regulator, HOPX. Here we report, matured HADHA mutant cardiomyocytes treated with an endogenous mixture of fatty acids manifest the disease phenotype: defective calcium dynamics and repolarization kinetics which results in a pro-arrhythmic state. Single cell RNA-seq reveals a cardiomyocyte developmental intermediate, based on metabolic gene expression. This intermediate gives rise to mature-like cardiomyocytes in control cells but, mutant cells transition to a pathological state with reduced fatty acid beta-oxidation, reduced mitochondrial proton gradient, disrupted cristae structure and defective cardiolipin remodeling. This study reveals that HADHA (tri-functional protein alpha), a monolysocardiolipin acyltransferase-like enzyme, is required for fatty acid beta-oxidation and cardiolipin remodeling, essential for functional mitochondria in human cardiomyocytes.
- Published
- 2019
6. Switch-like enhancement of epithelial-mesenchymal transition by YAP through feedback regulation of WT1 and Rho-family GTPases
- Author
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David H. Ellison, Deok Ho Kim, Sagar R. Shah, Kshitiz, Hong Nam Kim, Alfredo Quinones-Hinojosa, JinSeok Park, Andre Levchenko, Peter S. Kim, and Kahp-Yang Suh
- Subjects
rho GTP-Binding Proteins ,0301 basic medicine ,Epithelial-Mesenchymal Transition ,Surface Properties ,Science ,Green Fluorescent Proteins ,General Physics and Astronomy ,02 engineering and technology ,GTPase ,Feedback regulation ,Article ,General Biochemistry, Genetics and Molecular Biology ,Madin Darby Canine Kidney Cells ,Extracellular matrix ,03 medical and health sciences ,Dogs ,Cell Behavior (q-bio.CB) ,medicine ,Extracellular ,Animals ,Epithelial–mesenchymal transition ,WT1 Proteins ,lcsh:Science ,Adaptor Proteins, Signal Transducing ,Multidisciplinary ,Chemistry ,technology, industry, and agriculture ,Epithelial Cells ,Cell migration ,General Chemistry ,021001 nanoscience & nanotechnology ,Epithelium ,Nanostructures ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,Gene Knockdown Techniques ,FOS: Biological sciences ,embryonic structures ,Quantitative Biology - Cell Behavior ,lcsh:Q ,0210 nano-technology ,Wound healing ,Cell signalling - Abstract
Collective cell migration occurs in many patho-physiological states, including wound healing and invasive cancer growth. The integrity of the expanding epithelial sheets depends on extracellular cues, including cell-cell and cell-matrix interactions. We show that the nano-scale topography of the extracellular matrix underlying epithelial cell layers can strongly affect the speed and morphology of the fronts of the expanding sheet, triggering partial and complete epithelial-mesenchymal transitions (EMTs). We further demonstrate that this behavior depends on the mechano-sensitivity of the transcription regulator YAP and two new YAP-mediated cross-regulating feedback mechanisms: Wilms Tumor-1-YAP-mediated downregulation of E-cadherin, loosening cell-cell contacts, and YAP-TRIO-Merlin mediated regulation of Rho GTPase family proteins, enhancing cell migration. These YAP-dependent feedback loops result in a switch-like change in the signaling and the expression of EMT-related markers, leading to a robust enhancement in invasive cell spread, which may lead to a worsened clinical outcome in renal and other cancers., Reorganisation of the extracellular matrix (ECM) controls processes involving epithelial-mesenchymal transition (EMT). Here, the authors show that EMT occurring in epithelial cells on a fabricated nano-engineered cell adhesion surface is triggered by mechanical cues from the ECM.
- Published
- 2019
7. Anisotropic forces from spatially constrained focal adhesions mediate contact guidance directed cell migration
- Author
-
Patrick W. Alford, Rachel M. Edwards, Paolo P. Provenzano, Arja Ray, Oscar Lee, Deok Ho Kim, and Zaw Win
- Subjects
0301 basic medicine ,Materials science ,Science ,Traction (engineering) ,General Physics and Astronomy ,02 engineering and technology ,Cell Communication ,Time-Lapse Imaging ,General Biochemistry, Genetics and Molecular Biology ,Contact guidance ,Article ,Focal adhesion ,03 medical and health sciences ,Mice ,Optics ,Collagen fibres ,Cell Movement ,Cell Line, Tumor ,Neoplasms ,Cell Adhesion ,Animals ,Humans ,Anisotropy ,Cytoskeleton ,Actin ,Focal Adhesions ,Multidisciplinary ,Microscopy, Confocal ,business.industry ,Cell migration ,General Chemistry ,021001 nanoscience & nanotechnology ,Actins ,Actin Cytoskeleton ,030104 developmental biology ,Biophysics ,0210 nano-technology ,business - Abstract
Directed migration by contact guidance is a poorly understood yet vital phenomenon, particularly for carcinoma cell invasion on aligned collagen fibres. We demonstrate that for single cells, aligned architectures providing contact guidance cues induce constrained focal adhesion maturation and associated F-actin alignment, consequently orchestrating anisotropic traction stresses that drive cell orientation and directional migration. Consistent with this understanding, relaxing spatial constraints to adhesion maturation either through reduction in substrate alignment density or reduction in adhesion size diminishes the contact guidance response. While such interactions allow single mesenchymal-like cells to spontaneously ‘sense' and follow topographic alignment, intercellular interactions within epithelial clusters temper anisotropic cell–substratum forces, resulting in substantially lower directional response. Overall, these results point to the control of contact guidance by a balance of cell–substratum and cell–cell interactions, modulated by cell phenotype-specific cytoskeletal arrangements. Thus, our findings elucidate how phenotypically diverse cells perceive ECM alignment at the molecular level., Contact guidance on aligned substrates leads to directed cell migration through a poorly defined mechanism. Here the authors show that alignment of adhesion structures and F-actin generates anisotropic traction stress to drive directional migration, and cell-cell contact reduces force orientation and directional response.
- Published
- 2017
8. Author Correction: TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes
- Author
-
Oliver Fiehn, Hannele Ruohola-Baker, Shiri Levy, Charles E. Murry, Jason W. Miklas, Yuliang Wang, Anup Madan, Kevin M. Beussman, Daniel Raftery, Nathan J. Sniadecki, Damien Detraux, Tuula Manninen, Jesse Macadangdang, Anu Suomalainen, Peter Hofsteen, Megan R. Showalter, Xiulan Yang, Deok Ho Kim, Andrea Leonard, Elisa C. Clark, and Alec S.T. Smith
- Subjects
Multidisciplinary ,Philosophy ,Published Erratum ,Science ,General Physics and Astronomy ,General Chemistry ,Fatty acid beta-oxidation ,General Biochemistry, Genetics and Molecular Biology ,Article ,chemistry.chemical_compound ,Mechanisms of disease ,Cardiovascular diseases ,chemistry ,Cardiolipin ,lcsh:Q ,Theology ,lcsh:Science - Abstract
Mitochondrial trifunctional protein deficiency, due to mutations in hydratase subunit A (HADHA), results in sudden infant death syndrome with no cure. To reveal the disease etiology, we generated stem cell-derived cardiomyocytes from HADHA-deficient hiPSCs and accelerated their maturation via an engineered microRNA maturation cocktail that upregulated the epigenetic regulator, HOPX. Here we report, matured HADHA mutant cardiomyocytes treated with an endogenous mixture of fatty acids manifest the disease phenotype: defective calcium dynamics and repolarization kinetics which results in a pro-arrhythmic state. Single cell RNA-seq reveals a cardiomyocyte developmental intermediate, based on metabolic gene expression. This intermediate gives rise to mature-like cardiomyocytes in control cells but, mutant cells transition to a pathological state with reduced fatty acid beta-oxidation, reduced mitochondrial proton gradient, disrupted cristae structure and defective cardiolipin remodeling. This study reveals that HADHA (tri-functional protein alpha), a monolysocardiolipin acyltransferase-like enzyme, is required for fatty acid beta-oxidation and cardiolipin remodeling, essential for functional mitochondria in human cardiomyocytes., Mutations in the gene HADHA result in mitochondrial tri-functional protein (MTP) deficiency and can result in sudden infant death syndrome for which there is no treatment. Here the authors show that the MTP deficient pathology in human cardiomyocytes leads to an abnormal cardiolipin pattern and suggests that cardiolipin affecting compounds may serve as a potential therapy.
- Published
- 2020
9. Printing three-dimensional tissue analogues with decellularized extracellular matrix bioink
- Author
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Jong Won Rhie, Jin-Hyung Shim, Jinah Jang, Falguni Pati, Sung Won Kim, Dong-Heon Ha, Dong-Woo Cho, and Deok Ho Kim
- Subjects
3D bioprinting ,Multidisciplinary ,Decellularization ,Chemistry ,Cartilage ,General Physics and Astronomy ,Nanotechnology ,High cell ,General Chemistry ,Matrix (biology) ,General Biochemistry, Genetics and Molecular Biology ,Article ,law.invention ,Extracellular matrix ,medicine.anatomical_structure ,Tissue scaffolds ,law ,Heart tissues ,medicine ,Biomedical engineering - Abstract
The ability to print and pattern all the components that make up a tissue (cells and matrix materials) in three dimensions to generate structures similar to tissues is an exciting prospect of bioprinting. However, the majority of the matrix materials used so far for bioprinting cannot represent the complexity of natural extracellular matrix (ECM) and thus are unable to reconstitute the intrinsic cellular morphologies and functions. Here, we develop a method for the bioprinting of cell-laden constructs with novel decellularized extracellular matrix (dECM) bioink capable of providing an optimized microenvironment conducive to the growth of three-dimensional structured tissue. We show the versatility and flexibility of the developed bioprinting process using tissue-specific dECM bioinks, including adipose, cartilage and heart tissues, capable of providing crucial cues for cells engraftment, survival and long-term function. We achieve high cell viability and functionality of the printed dECM structures using our bioprinting method., The application of 3D printing to biomaterials presents interesting possibilities for tissue engineering. Here, the authors show that a printing medium derived from an extracellular matrix can be applied to printing tissue analogues with enhanced cell compatibility.
- Published
- 2014
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