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Variety adaptation to future climate for wheat is important but lacks comprehensive understanding. Here, we evaluate genetic advancement under current and future climate using a dataset of wheat breeding nurseries in North America during 1960-2018. Results show that yields declined by 3.6% per 1 °C warming for advanced winter wheat breeding lines, compared with −5.5% for the check variety, indicating a superior climate-resilience. However, advanced spring wheat breeding lines showed a 7.5% yield reduction per 1 °C warming, which is more sensitive than a 7.1% reduction for the check variety, indicating climate resilience is not improved and may even decline for spring wheat. Under future climate of SSP scenarios, yields of winter and spring wheat exhibit declining trends even with advanced breeding lines, suggesting future climate warming could outpace the yield gains from current breeding progress. Our study highlights that the adaptation progress following the current wheat breeding strategies is challenging. Wheat breeding programmes improve yield by enhancing biotic and abiotic stress resistance. This study reveals that high temperature extremes adversely affect the productivity of new elite wheat breeding lines, and that future yield gains may be outpaced by the rapid advance of climate change. [ABSTRACT FROM AUTHOR]

Computational analyses of pathogen genomes are increasingly used to unravel the dispersal history and transmission dynamics of epidemics. Here, we show how to go beyond historical reconstructions and use spatially-explicit phylogeographic and phylodynamic approaches to formally test epidemiological hypotheses. We illustrate our approach by focusing on the West Nile virus (WNV) spread in North America that has substantially impacted public, veterinary, and wildlife health. We apply an analytical workflow to a comprehensive WNV genome collection to test the impact of environmental factors on the dispersal of viral lineages and on viral population genetic diversity through time. We find that WNV lineages tend to disperse faster in areas with higher temperatures and we identify temporal variation in temperature as a main predictor of viral genetic diversity through time. By contrasting inference with simulation, we find no evidence for viral lineages to preferentially circulate within the same migratory bird flyway, suggesting a substantial role for non-migratory birds or mosquito dispersal along the longitudinal gradient. Classical epidemiological approaches have been limited in their ability to formally test hypotheses. Here, Dellicour et al. illustrate how phylodynamic and phylogeographic analyses can be leveraged for hypothesis testing in molecular epidemiology using West Nile virus in North America as an example. [ABSTRACT FROM AUTHOR]