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Self-assembled monolayer (SAM) patterns on electrodes are often utilized to guide the assembly of single-walled carbon nanotubes (SWCNTs) onto the electrodes to form desired device structures. In this case, the SWCNTs are in contact with the electrodes through the SAM which comprises molecular wires. Presumably, it is desirable to use conjugated molecular wires for a low contact resistance because they have been reported as a better electric conductor than non-conjugated ones. However, until now, the directed-assembly of SWCNTs has been driven mostly via molecular wires with alkane backbones which are known to be relatively poor conductors. Herein, we report large-scale directed-assembly of SWCNTs utilizing SAM patterns comprising conjugated molecular wires. We achieved highly selective adsorption and precision alignment of SWCNTs utilizing polar SAM patterns comprising conjugated molecular wires, while SAM patterns with non-polar terminal groups efficiently prevented adsorption of SWCNTs. Furthermore, we developed a process for assembling a SWCNT across two electrodes coated with conjugated molecular wires, and the electrical conduction through the SWCNT was measured via a conducting atomic force microscope. This result could be an important guideline for large-scale directed-assembly of SWCNT-based devices in the future.