1. Molecular Fluctuations as a Ruler of Force-Induced Protein Conformations
- Author
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Stephanie Board, Marta Castro-Lopez, Andrew Stannard, Marc Mora, Amy E. M. Beedle, and Sergi Garcia-Manyes
- Subjects
protein nanomechanics ,Protein Folding ,Magnetic tweezers ,Protein Conformation ,Bioengineering ,single molecule magnetic tweezers ,02 engineering and technology ,Mechanotransduction, Cellular ,Article ,03 medical and health sciences ,Molecular dynamics ,protein stiffness ,General Materials Science ,Mechanotransduction ,protein fluctuations ,Dynamic equilibrium ,030304 developmental biology ,Mechanical Phenomena ,Physics ,0303 health sciences ,energy landscape ,Mechanical Engineering ,Protein dynamics ,Dynamics (mechanics) ,Proteins ,Energy landscape ,General Chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Chemical physics ,Polymer physics ,Protein folding ,0210 nano-technology - Abstract
Molecular fluctuations directly reflect the underlying energy landscape. Variance analysis examines protein dynamics in several biochemistry-driven approaches, yet measurement of probe-independent fluctuations in proteins exposed to mechanical forces remains only accessible through steered molecular dynamics simulations. Using single molecule magnetic tweezers, here we conduct variance analysis to show that individual unfolding and refolding transitions occurring in dynamic equilibrium in a single protein under force are hallmarked by a change in the protein's end-to-end fluctuations, revealing a change in protein stiffness. By unfolding and refolding three structurally distinct proteins under a wide range of constant forces, we demonstrate that the associated change in protein compliance to reach force-induced thermodynamically stable states scales with the protein's contour length increment, in agreement with the sequence-independent freely jointed chain model of polymer physics. Our findings will help elucidate the conformational dynamics of proteins exposed to mechanical force at high resolution which are of central importance in mechanosensing and mechanotransduction.
- Published
- 2021
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