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• A novel water transparency calculation algorithm is introduced, employing deep neural network and image processing technology. This algorithm obviates the need for a water gauge, allowing the calculation of water transparency solely through the analysisof Secchi disk videos. Notably, it demonstrates heightened detection efficiency and success rates. • An enhanced Siamese tracker, termed SiamDCFF (Siamese tracker based on dual correlation feature fusion), is proposed for Secchi disk recognition. Distinguishing features of SiamDCFF include a dual correlation module and a feature fusion module. On the Secchi disk dataset, SiamDCFF achieves the highest success rate, outperforming other methods detailed in this paper. • The simplified 3D-ResNet [41] is leveraged to assess the state of the Secchi disk, transforming the critical position determination problem into an optimization challenge. The objective function involves maximizing the number of visible and invisible Secchi disk images on both sides of the critical position. This method facilitates adaptive critical position determination. • A novel Gated Recurrent Unit based on auto-regression (ARGRU) is proposed, taking into account the motion characteristics of the Secchi disk. ARGRU achieves a higher success detection rate for water transparency compared to the water gauge recognition method. Notably, ARGRU outperforms RNN [42], GRU, and LSTM [43] on the dataset presented in this paper. Water transparency is traditionally assessed through visual inspection using a lowered Secchi disk (SD) into the water, with the disappearance depth of the SD recorded as the measure of transparency. However, manual and visually-dependent frequency measurements of the SD render this process labor-intensive and time-consuming. This paper presents a comprehensive machine-vision-based algorithm designed for the automatic computation of water transparency using Secchi disk videos. The algorithm leverages multiple deep neural networks, including an enhanced Siamese tracking model, a 3D-ResNet, and an improved GRU network. Trained models directly identify the SD in the video, calculating water transparency by processing pixel information. Experimental results demonstrate the algorithm's efficacy in estimating water transparency across diverse natural environments, achieving commendable accuracy (MAE = 3.6 cm MSE = 21.5 cm RMSE = 4.6 cm), rapid processing speed (average 6.87 s), and robust stability. In comparison with the former water-gauge-based algorithm, our proposed algorithm exhibits heightened efficiency and a superior detection success rate. [ABSTRACT FROM AUTHOR]