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Since there is a close relationship between network information security attack events and time complexity, it is necessary to count the degree of correlation between the current connection record and the connection record within a certain period of time before. Only in this way can the relationship between network connection data and network information security attack events be better reflected. In this paper, a rough Fourier fast algorithm based on rough set theory is proposed. Based on the characteristic attributes of the intrusion detection data set with the most value of character attributes as the data division basis, the computer network intrusion anomaly detection data set is intelligently divided into small data sets, so as to carry out attribute reduction. The network intrusion detection rule update experiment adopts the misuse detection method, extracts some samples from the KDD99 data set for training, obtains the computer network intrusion detection rules in the hierarchical decision table, and uses the incremental learning algorithm to update the rules, compared with the intrusion detection rules expressed by the decision table to test the feasibility and effectiveness of the rule update, and compared with the improved RSDB, RE-RFE algorithm, and KNN algorithm to evaluate the effect of the rough Fourier fast detection model applied to the problem of network intrusion anomaly detection. Using the attribute subset reduced by the rough Fourier algorithm to perform classification and modeling of computer network intrusion anomaly detection is significantly reduced, and the average time is reduced by 0.09 seconds, and this paper lays a good foundation for the application of network security intrusion detection algorithm. [ABSTRACT FROM AUTHOR]