3,517 results
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2. Leaf silicon accumulation rates in relation to light environment and shoot growth rates in paper mulberry (Broussonetia papyrifera, Moraceae)
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Kaoru Kitajima and Hirofumi Kajino
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Silicon ,biology ,fungi ,Paper mulberry ,food and beverages ,Growing season ,Plant physiology ,Plant Science ,Broussonetia ,biology.organism_classification ,Moraceae ,Plant ecology ,Plant Leaves ,Horticulture ,Shoot ,Morus ,Transpiration - Abstract
While increasing numbers of studies report wide variations of leaf silicon (Si) accumulation among plant species, within-species variations of leaf Si accumulation have scarcely been examined for tree species. As in crop plants, environmental factors that affect transpiration rates may influence passive transpiration-dependent transport of Si uptake in trees. Here, we tested a hypothesis that leaf Si accumulation rate should be higher in shoots that receive more light and thus achieve faster growth, using Broussonetia papyrifera, a pioneer tree species with successive leaf production and Si accumulation with leaf age. We marked individual leaves weekly throughout the growing season (June-September), and measured Si concentration and light availability in relation to the chronosequence of leaf age in September. In shoots that continued growing and successively produced leaves throughout the growing season, leaf Si content increased linearly with leaf age. In support of our hypothesis, leaf Si accumulation rate varied widely among shoots with positive correlations with shoot growth and light availability. In conclusion, both leaf age and microenvironment affect within-species variations in leaf Si concentration of this species, a moderate Si accumulator.
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- 2021
3. Paper chromatographic survey of anthocyanins in leguminosae
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Ishikura, Nariyuki and Shibata, Mannen
- Abstract
Abstract: Three different anthocyanins were shown to be contained in the dull purple flowers ofMucuna sempervirens Hemsl. (Japanese nameAira-tobikazura). They were identified as the 3-monoglucosides of delphinidin, petunidin and malvidin, respectively, by means of paper chromatographic and spectral analyses, and present in the ratio about 1:5:4 in the petals.
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- 1973
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4. Paper chromatographic survey of anthocyanins in leguminosae
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Ishikura, Nariyuki, Ito, Setsuro, and Shibata, Mannen
- Abstract
Abstract: Flower anthocyanins of 22 leguminous species, of which 20 species belong to the subfamily Faboideae, were examined. In the present study, 21 kinds of anthocyanin were found and their distribution pattern in 22 species was discussed.Albizia julibrissin belonging to the subfamily Mimosoideae contained only cyanidin 3-glucoside, which was quite different from the pigment constitutents in other species. Anthocyanins ofCercis chinensis belonging to the subfamily Caesalpinioideae were similar to those of species of the subfamily Faboideae. Malvidin glycoside was contained as a main pigment in 14 species examined. Malvidin and petunidin glycosides were most frequent and occurred in 20 legumes. Delphinidin glycoside, cyanidin glycoside and peonidin glycoside were present in descending order.
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- 1978
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5. Aboveground biomass increments over 26 years (1993–2019) in an old-growth cool-temperate forest in northern Japan
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Mahoko Noguchi, Kazuhiko Hoshizaki, Michinari Matsushita, Daiki Sugiura, Tsutomu Yagihashi, Tomoyuki Saitoh, Tomohiro Itabashi, Ohta Kazuhide, Mitsue Shibata, Daisuke Hoshino, Takashi Masaki, Katsuhiro Osumi, Kazunori Takahashi, and Wajirou Suzuki
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Japan ,Forest biomass ,Regular Paper – Ecology/Ecophysiology/Environmental Biology ,Temperature ,Biomass ,Kanumazawa Riparian Research Forest ,Plant Science ,Forests ,Long-term data ,Ecosystem ,Trees - Abstract
Assessing long-term changes in the biomass of old-growth forests with consideration of climate effects is essential for understanding forest ecosystem functions under a changing climate. Long-term biomass changes are the result of accumulated short-term changes, which can be affected by endogenous processes such as gap filling in small-scale canopy openings. Here, we used 26 years (1993–2019) of repeated tree census data in an old-growth, cool-temperate, mixed deciduous forest that contains three topographic units (riparian, denuded slope, and terrace) in northern Japan to document decadal changes in aboveground biomass (AGB) and their processes in relation to endogenous processes and climatic factors. AGB increased steadily over the 26 years in all topographic units, but different tree species contributed to the increase among the topographic units. AGB gain within each topographic unit exceeded AGB loss via tree mortality in most of the measurement periods despite substantial temporal variation in AGB loss. At the local scale, variations in AGB gain were partially explained by compensating growth of trees around canopy gaps. Climate affected the local-scale AGB gain: the gain was larger in the measurement periods with higher mean air temperature during the current summer but smaller in those with higher mean air temperature during the previous autumn, synchronously in all topographic units. The influences of decadal summer and autumn warming on AGB growth appeared to be counteracting, suggesting that the observed steady AGB increase in KRRF is not fully explained by the warming. Future studies should consider global and regional environmental factors such as elevated CO2 concentrations and nitrogen deposition, and include cool-temperate forests with a broader temperature range to improve our understanding on biomass accumulation in this type of forests under climate change. Supplementary Information The online version contains supplementary material available at 10.1007/s10265-021-01358-5.
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- 2022
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6. A plant-specific DYRK kinase DYRKP coordinates cell morphology in Marchantia polymorpha
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Takayuki Kohchi, Tomoyuki Furuya, Hirokazu Tsukaya, Haruka Shinkawa, Hideya Fukuzawa, Masataka Kajikawa, and Ryuichi Nishihama
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Liverwort ,Mutant ,Arabidopsis ,Regular Paper – Genetics/Developmental Biology ,Plant Science ,Protein Serine-Threonine Kinases ,Protein-Tyrosine Kinases ,Biology ,biology.organism_classification ,Cell morphology ,Protein kinase ,Cell biology ,Marchantia polymorpha ,Protein kinase domain ,Marchantia ,Morphogenesis ,Cell shape ,Phosphorylation ,Arabidopsis thaliana ,Kinase activity ,Protein kinase A - Abstract
Dual-specificity tyrosine phosphorylation-regulated kinases (DYRKs) are activated via the auto-phosphorylation of conserved tyrosine residues in their activation loop during protein translation, and they then phosphorylate serine/threonine residues on substrates. The DYRK family is widely conserved in eukaryotes and is composed of six subgroups. In plant lineages, DYRK homologs are classified into four subgroups, DYRK2s, yet another kinase1s, pre-mRNA processing factor 4 kinases, and DYRKPs. Only the DYRKP subgroup is plant-specific and has been identified in a wide array of plant lineages, including land plants and green algae. It has been suggested that in Arabidopsis thaliana DYRKPs are involved in the regulation of centripetal nuclear positioning induced by dark light conditions. However, the molecular functions, such as kinase activity and the developmental and physiological roles of DYRKPs are poorly understood. Here, we focused on a sole DYRKP ortholog in the model bryophyte, Marchantia polymorpha, MpDYRKP. MpDYRKP has a highly conserved kinase domain located in the C-terminal region and shares common sequence motifs in the N-terminal region with other DYRKP members. To identify the roles of MpDYRKP in M. polymorpha, we generated loss-of-function Mpdyrkp mutants via genome editing. Mpdyrkp mutants exhibited abnormal, shrunken morphologies with less flattening in their vegetative plant bodies, thalli, and male reproductive organs, antheridial receptacles. The surfaces of the thalli in the Mpdyrkp mutants appeared uneven and disordered. Moreover, their epidermal cells were drastically altered to a narrower shape when compared to the wild type. These results suggest that MpDYRKP acts as a morphological regulator, which contributes to orderly tissue morphogenesis via the regulation of cell shape.
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- 2021
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7. Transcriptome analysis of North American sweet birch (Betula lenta) revealed a higher expression of genes involved in the biosynthesis of secondary metabolites than European silver birch (B. pendula)
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Kiran Singewar, Eberhard Hartung, Birgit Kersten, Matthias Fladung, and Christian R. Moschner
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Candidate gene ,Transcription regulators ,Secondary Metabolism ,Plant Science ,Silver birch ,Trees ,Transcriptome ,chemistry.chemical_compound ,Biosynthesis ,Gene Expression Regulation, Plant ,Transcriptomics ,Gene ,Betula ,Genetics ,biology ,Secondary metabolites ,Gene Expression Profiling ,RNA ,Regular Paper – Genetics/Developmental Biology ,biology.organism_classification ,Sweet birch ,Terpenoid ,Plant Leaves ,chemistry ,visual_art ,North America ,visual_art.visual_art_medium ,Bark - Abstract
The North American Betula lenta L. (sweet birch) has been used for medicinal reasons for centuries by native Americans. Although sophisticated technologies have rapidly been developed, a large information gap has been observed regarding genetic regulators of medicinally important compounds in sweet birch. Very little is known on the different genes involved in secondary metabolic biosynthesis in sweet birch. To gain a deeper insight into genetic factors, we performed a transcriptome analysis of each three biological samples from different independent trees of sweet and European silver birch (B. pendula Roth). This allowed us to precisely quantify the transcripts of about 24,000 expressed genes including 29 prominent candidate genes putatively involved in the biosynthesis of secondary metabolites like terpenoids, and aromatic benzoic acids. A total number of 597 genes were differentially expressed between B. lenta and B. pendula, while 264 and 210 genes showed upregulation in the bark and leaf of B. lenta, respectively. Moreover, we identified 39 transcriptional regulatory elements, involved in secondary metabolite biosynthesis, upregulated in B. lenta. Our study demonstrated the potential of RNA sequencing to identify candidate genes interacting in secondary metabolite biosynthesis in sweet birch. The candidate genes identified in this study could be subjected to genetic engineering to functionally characterize them in sweet birch. This knowledge can be beneficial to the increase of therapeutically important compounds.
- Published
- 2021
8. Cytogenetic events in the endosperm of amphiploid Avena magna × A. longiglumis
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Romuald Kosina and Paulina Tomaszewska
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Nuclear disorders ,food.ingredient ,Avena ,Amphiploid ,Chromosomal translocation ,Plant Science ,Biology ,Genome ,Chromosomes, Plant ,Endosperm ,Chromosome rearrangements ,food ,medicine ,Genome domains ,Repetitive Sequences, Nucleic Acid ,Genetics ,Regular Paper – Genetics/Developmental Biology ,food and beverages ,Chromosome ,Cell cycle ,medicine.anatomical_structure ,Cytogenetic Analysis ,Ploidy ,Nucleus ,Genome, Plant - Abstract
This study analysed cytogenetic events occurring in the syncytial endosperm of theAvena magnaH. C. Murphy & Terrell × Avena longiglumisDurieu amphiploid, which is a product of two wild species having different genomes. Selection through the elimination of chromosomes and their fragments, including those translocated, decreased the level of ploidy in the endosperm below the expected 3n, leading to the modal number close to 2n. During intergenomic translocations, fragments of the heterochromatin-rich C-genome were transferred to the D and Al genomes. Terminal and non-reciprocal exchanges dominated, whereas other types of translocations, including microexchanges, were less common. Using two probes and by counterstaining with DAPI, theA. longiglumisand the rare exchanges between the D and Al genomes were detected by GISH. The large discontinuity in the probe labelling in the C chromosomes demonstrated inequality in the distribution of repetitive sequences along the chromosome and probable intragenomic rearrangements. In the nucleus, the spatial arrangement of genomes was non-random and showed a sectorial-concentric pattern, which can vary during the cell cycle, especially in the less stable tissue like the hybrid endosperm.
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- 2021
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9. Three-dimensional quantification of twisting in the Arabidopsis petiole
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Yuta Otsuka and Hirokazu Tsukaya
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Arabidopsis thaliana (Arabidopsis) ,Change over time ,biology ,Deformation (mechanics) ,Arabidopsis Proteins ,Arabidopsis ,Regular Paper – Morphology/Anatomy/Structural Biology ,Correction ,Flowers ,Plant Science ,Bending ,biology.organism_classification ,Petiole (botany) ,Imaging ,Plant Leaves ,Leaf ,Orientation (geometry) ,Twist ,Phototropism ,Biological system ,Differential growth ,3D - Abstract
Organisms have a variety of three-dimensional (3D) structures that change over time. These changes include twisting, which is 3D deformation that cannot happen in two dimensions. Twisting is linked to important adaptive functions of organs, such as adjusting the orientation of leaves and flowers in plants to align with environmental stimuli (e.g. light, gravity). Despite its importance, the underlying mechanism for twisting remains to be determined, partly because there is no rigorous method for quantifying the twisting of plant organs. Conventional studies have relied on approximate measurements of the twisting angle in 2D, with arbitrary choices of observation angle. Here, we present the first rigorous quantification of the 3D twisting angles of Arabidopsis petioles based on light sheet microscopy. Mathematical separation of bending and twisting with strict definition of petiole cross-sections were implemented; differences in the spatial distribution of bending and twisting were detected via the quantification of angles along the petiole. Based on the measured values, we discuss that minute degrees of differential growth can result in pronounced twisting in petioles. Supplementary Information The online version contains supplementary material available at 10.1007/s10265-021-01291-7.
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- 2021
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10. In search of female sterility causes in the tetraploid and pentaploid cytotype of Pilosella brzovecensis (Asteraceae)
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Agnieszka Janas, Krystyna Musiał, and Zbigniew Szeląg
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Sterility ,Regular Paper – Morphology/Anatomy/Structural Biology ,Asexual reproduction ,Plant Science ,Asteraceae ,Hawkweed ,hawkweed ,reproduction ,chemistry.chemical_compound ,Apomixis ,Botany ,Humans ,Hieracium ,Ovule ,biology ,Callose ,Reproduction ,biology.organism_classification ,Tetraploidy ,chemistry ,Seeds ,apomixis ,Female ,Megaspore mother cell ,Megaspore ,Infertility, Female ,callose ,ovule - Abstract
Within the agamic Pilosella complex, apomixis (asexual reproduction through seed) involves apospory, parthenogenesis, and autonomous endosperm development. Observations of reproductive biology in P. brzovecensis throughout four growing seasons in the garden have shown that both tetraploid and pentaploid plants of this species do not produce viable seeds and reproduce exclusively vegetatively by underground stolons. The reasons for the seed development failure were unknown, therefore our research focused on the analysis of reproductive events in the ovules of this taxon. We found that apospory was initiated in the ovules of both cytotypes. Multiple aposporous initial (AI) cells differentiated in close proximity to the megaspore mother cell (MMC) and suppressed megasporogenesis at the stage of early prophase I. However, none of the AI cells was able to further develop into a multi-nucleate aposporous embryo sac (AES) due to the inhibition of mitotic divisions. It was unusual that callose was accumulated in the walls of AI cells and its synthesis was most likely associated with a response to the dysfunction of these cells. Callose is regarded as the isolating factor and its surprising deposition in the ovules of P. brzovecensis may signal disruption of reproductive processes that cause premature termination of the aposporous development pathway and ultimately lead to ovule sterility. The results of our embryological analysis may be the basis for undertaking advanced molecular studies aimed at fully understanding of the causes of female sterility in P. brzovecensis.
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- 2021
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11. In the tripartite combination Botrytis cinerea–Arabidopsis–Eurydema oleracea, the fungal pathogen alters the plant–insect interaction via jasmonic acid signalling activation and inducible plant-emitted volatiles
- Author
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Ederli, Luisa, Salerno, Gianandrea, and Quaglia, Mara
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Insecta ,food.ingredient ,Arabidopsis ,Cyclopentanes ,Plant Science ,Plant‐emitted volatiles ,Eurydema oleracea ,Botrytis cinerea ,chemistry.chemical_compound ,food ,Ascomycota ,Gene Expression Regulation, Plant ,Botany ,Animals ,Oxylipins ,Ecosystem ,Plant Diseases ,Botrytis ,Herbivore ,biology ,Arabidopsis Proteins ,Host (biology) ,Jasmonic acid ,fungi ,food and beverages ,Plant physiology ,Plant ,biology.organism_classification ,Plant ecology ,Jasmonate signalling pathways ,Gene Expression Regulation ,chemistry ,Regular Paper – Ecology/Ecophysiology/Environmental Biology - Abstract
In ecosystems, plants are continuously challenged by combined stress conditions more than by a single biotic or abiotic factor. Consequently, in recent years studies on plant relationships with multiple stresses have aroused increasing interest. Here, the impact of inoculation with fungal pathogens with different lifestyles on Arabidopsis plants response to the following infestation with the invasive crop pest Eurydema oleracea was investigated. In particular, as fungal pathogens the necrotroph Botrytis cinerea and the biotroph Golovinomyces orontii were used. Plants exposed to B. cinerea, but not to G. orontii, showed reduced herbivore feeding damage. This difference was associated to different hormonal pathways triggered by the pathogens: G. orontii only induced the salicylate-mediated pathway, while B. cinerea stimulated also the jasmonate-dependent signalling, which persisted for a long time providing a long-term defence to further herbivore attack. In particular, the lower susceptibility of B. cinerea-infected Arabidopsis plants to E. oleracea was related to the stimulation of the JA-induced pathway on the production of plant volatile compounds, since treatment with VOCs emitted by B. cinerea inoculated plants inhibited both insect plant choice and feeding damage. These results indicate that necrotrophic plant pathogenic fungi modulate host volatile emission, thus affecting plant response to subsequent insect, thereby increasing the knowledge on tripartite plant–microbe–insect interactions in nature.
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- 2021
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12. On the spore ornamentation of the microsoroid ferns (microsoroideae, polypodiaceae)
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Harald Schneider, Jaakko Hyvönen, Ho-Yih Liu, Chi-Chuan Chen, Cheng-Wei Chen, Helsinki Institute of Sustainability Science (HELSUS), Botany, Finnish Museum of Natural History, Viikki Plant Science Centre (ViPS), Embryophylo, and Plant Biology
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Spores ,0106 biological sciences ,0301 basic medicine ,Scanning electron microscopy (SEM) ,Old World ,Plant Science ,Subtropics ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,Polypodiaceae ,Phylogenetics ,Botany ,Clade ,Phylogeny ,biology ,Phylogenetic tree ,Ancestral state reconstruction ,Palynology ,11831 Plant biology ,biology.organism_classification ,Regular Paper – Taxonomy/Phylogenetics/Evolutionary Biology ,Spore ,030104 developmental biology ,Taxon ,Ferns - Abstract
Microsoroideae is the third largest of the six subfamilies of Polypodiaceae, containing over 180 species. These ferns are widely distributed in the tropical and subtropical regions of the Old World and Oceania. We documented the spore ornamentation and integrated these data into the latest phylogenetic hypotheses, including a sampling of 100 taxa representing each of 17 major lineages of microsoroid ferns. This enabled us to reconstruct the ancestral states of the spore morphology. The results show verrucate ornamentation as an ancestral state for Goniophlebieae and Lecanoptereae, globular for Microsoreae, and rugulate surface for Lepisoreae. In addition, spore ornamentation can be used to distinguish certain clades of the microsoroid ferns. Among all five tribes, Lecanoptereae show most diversity in spore surface ornamentation. Electronic supplementary material The online version of this article (10.1007/s10265-020-01238-4) contains supplementary material, which is available to authorized users.
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- 2020
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13. Light and nutrient limitations for tree growth on young versus old soils in a Bornean tropical montane forest
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Shin-ichiro Aiba and Kanehiro Kitayama
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0106 biological sciences ,0301 basic medicine ,Beta diversity ,Floristic turnover ,Plant Science ,Rainforest ,Forests ,01 natural sciences ,complex mixtures ,Basal area ,Trees ,03 medical and health sciences ,Tree growth ,Soil ,Soil aging ,Borneo ,Dominance (ecology) ,Pedogenesis ,Tropical Climate ,biology ,Tristaniopsis ,Understory ,Nutrients ,biology.organism_classification ,Fagaceae ,030104 developmental biology ,Agronomy ,Soil water ,Regular Paper – Ecology/Ecophysiology/Environmental Biology ,010606 plant biology & botany - Abstract
We examined forest and tree responses to decreasing nutrient availability with soil aging in a species-rich tropical montane rain forest on Mount Kinabalu, Borneo. Community composition and structure and tree growth rates were compared between two 1 ha plots on nutrient-rich young soil versus nutrient-deficient old soil. Myrtaceae and Fagaceae dominated both plots. With soil aging, the dominance of Lauraceae, stem density, basal area and aboveground biomass decreased, and the forest understory became brighter. Some dominant taxa on the old soil (Podocarpaceae and the genus Tristaniopsis in Myrtaceae) were virtually absent on the young soil; this was attributed to light limitation in the understory. Growth rates of understory trees were lower on the young soil, whereas those of canopy trees were lower on the old soil. This suggested that the growth of understory trees was limited by light on the young soil, whereas that of canopy trees was limited by nutrients on the old soil. Of the eight species that were abundant in both plots, the dominance of five species was considerably lower on the old soil, four of which also exhibited decreased maximum sizes and lower growth rates. The remaining three species showed similar dominance across plots without a decline in growth rates, although they exhibited decreased maximum sizes on the old soil. These analyses demonstrated divergent responses of species to the soil-age gradient. We suggest that the differential responses of species to decreasing nutrient availability with a concomitant increase in understory light levels explain floristic turnover with soil aging.
- Published
- 2020
14. The ability of seeds to float with water currents contributes to the invasion success of Impatiens balfourii and I. glandulifera
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Wojciech Solarz, Paweł Olejniczak, Magdalena Gąsienica-Staszeczek, Katarzyna Berent, and Kamil Najberek
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Seed coat thickness ,Population ,Lag phase ,Plant Science ,Biology ,Pollinator ,Botany ,Biological invasions ,education ,Riparian zone ,education.field_of_study ,geography ,geography.geographical_feature_category ,Seed cross-section ,Water ,food and beverages ,Water current ,Tetrazolium (TZ) test ,biology.organism_classification ,Impatiens glandulifera ,Europe ,Plant ecology ,Seeds ,Regular Paper – Ecology/Ecophysiology/Environmental Biology ,Impatiens balfourii ,Impatiens ,Introduced Species ,Invasion corridors - Abstract
Two alien species in Europe,Impatiens glanduliferaandI. balfourii, are closely related, have similar growth rates and reproductive capacities, and are very attractive to pollinators. Nevertheless, onlyI. glanduliferais a highly invasive alien species in Europe, whileI. balfouriiis non-invasive. We assumed that the varying levels of invasiveness are driven by differences in the floating ability of their seeds, which may determine the invasion success of riparian alien plants, such as theImpatiensspecies. By mimicking two types of aquatic conditions, we determined seed floating ability for each species from younger and older populations. We also analyzed four seed traits: seed viability, surface, shape and coat structure. Seeds of the non-invasiveI. balfouriifloat less well than seeds of the invasiveI. glandulifera. We also found that the seeds ofI. balfouriifrom the younger population have a higher floating ability in comparison with that of the seeds from the older population. The results forI. glanduliferawere the opposite, with decreased floating ability in the younger population. These differences were associated with seed surface, shape and coat structure. These results indicate that the floating ability ofI. balfouriiseeds may increase over time following its introduction into a given area, while in the case ofI. glandulifera, this ability may gradually decrease. Therefore, the former species, currently regarded as a poor disperser, has the potential to become invasive in the future, whereas the latter does not seem to benefit from further investments in the floating ability of its seeds.
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- 2020
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15. Evolutionary diversification of taiwanioid conifers: evidence from a new Upper Cretaceous seed cone from Hokkaido, Japan
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Ruth A. Stockey, Harufumi Nishida, and Gar W. Rothwell
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Scale (anatomy) ,Hokkaido ,Cupressaceae ,Regular Paper – Morphology/Anatomy/Structural Biology ,Plant Science ,Paleontology ,Resin canal ,Japan ,Animals ,Vascular tissue ,Bract ,biology ,Fossils ,Conifer seed cone ,biology.organism_classification ,Biological Evolution ,Cretaceous ,Tracheophyta ,Late Cretaceous ,Seeds ,Taiwanioid diversity ,sense organs ,Anatomy ,Peduncle (botany) ,Paleogene - Abstract
A single cylindrical seed cone 2 cm long, 1.1 cm wide has been found preserved in a calcium carbonate marine concretion from the Hakobuchi Formation (late Campanian-early Maastrichtian) of Hobetsu, Hokkaido, Japan. The cone, attached to a bent peduncle lacking leaves, has helically arranged bract/scale complexes that arise at right angles from the cone axis in the middle of the cone. The cone axis, ca. 1 mm wide, has a broad cylinder of secondary vascular tissue, and lacks a continuous resin canal system. Bract-scale complexes are laminar, cordate-orbiculate, and upturned distally, consisting primarily of bract tissue with no visible scale tip. The vascular trace to the bract/scale complex originates as a rod that divides laterally into several traces at the level of seed attachment. A single resin canal originates at the base of the bract-scale complex abaxial to the vascular strand, but more distally there are up to ca. 15 large resin canals that form a single row. Two to three inverted winged seeds are attached adaxially near the cone periphery. Cone structure and vascularization are most similar to those in the Cupressaceae, Subfamily Taiwanioideae, differing from living Taiwania cryptomerioides by having up to three seeds/scale rather than two, an abruptly upturned bract tip, in details of bract/scale vasculature, and a cone peduncle lacking leaves. This cone is described as Mukawastrobus satoi Stockey, Nishida and Rothwell. Together with previously described Early to Late Cretaceous taiwanioid seed cones from Mongolia and Hokkaido the new species demonstrates that the taxonomically diagnostic characters of such conifers are as subtle as those of Cretaceous and Cenozoic sequoioid Cupressaceae. This realization emphasizes that evolutionary diversification and turnover among taiwanioid conifers during the Cretaceous and Paleogene are probably far greater than currently recognized.
- Published
- 2020
16. Plastome phylogenomics of Allaeanthus, Broussonetia and Malaisia (Dorstenieae, Moraceae) and the origin of B. × kazinoki.
- Author
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Kuo, Wen-Hsi, Liu, Shih-Hui, Chang, Chiung-Chih, Hsieh, Chia-Lun, Li, Yi-Hsuan, Ito, Takuro, Won, Hyosig, Kokubugata, Goro, and Chung, Kuo-Fang
- Subjects
RIBOSOMAL DNA ,HAPLOTYPES ,NUCLEAR DNA ,MORACEAE ,PAPERMAKING ,RAW materials - Abstract
Species of Broussonetia have been essential in the development of papermaking technology. In Japan and Korea, a hybrid between B. monoica and B. papyrifera (= B. × kazinoki) known as kōzo and daknamu is still the major source of raw materials for making traditional paper washi and hanji, respectively. Despite their cultural and practical significance, however, the origin and taxonomy of kōzo and daknamu remain controversial. Additionally, the long-held generic concept of Broussonetia s.l., which included Sect. Allaeanthus and Sect. Broussonetia, was challenged as phylogenetic analyses showed Malaisia is sister to the latter section. To re-examine the taxonomic proposition that recognizes Allaeanthus, Broussonetia, and Malaisia (i.e., Broussonetia alliance), plastome and nuclear ribosomal DNA (nrDNA) sequences of six species of the alliance were assembled. Characterized by the canonical quadripartite structure, genome alignments and contents of the six plastomes (160,121–162,594 bp) are highly conserved, except for the pseudogenization and/or loss of the rpl22 gene. Relationships of the Broussonetia alliance are identical between plastome and nrDNA trees, supporting the maintenance of Malaisia and the resurrection of Allaeanthus. The phylogenomic relationships also indicate that the monoecy in B. monoica is a derived state, possibly resulting from hybridization between the dioecious B. kaempferi (♀) and B. papyrifera (♂). Based on the hypervariable ndhF-rpl32 intergenic spacer selected by sliding window analysis, phylogeographic analysis indicates that B. monoica is the sole maternal parent of B. × kazinoki and that daknamu carries multiple haplotypes, while only one haplotype was detected in kōzo. Because hybridizations between B. monoica and B. papyrifera are unidirectional and have occurred rarely in nature, our data suggest that daknamu might have originated via deliberate hybrid breeding selected for making hanji in Korea. On the contrary, kōzo appears to have a single origin and the possibility of a Korean origin cannot be ruled out. [ABSTRACT FROM AUTHOR]
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- 2022
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17. Complex origins of chloroplast membranes with photosynthetic machineries: multiple transfers of genes from divergent organisms at different times or a single endosymbiotic event?
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Naoki Sato
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Genetics ,Cyanobacteria ,Symbiogenesis ,Nuclear gene ,Chloroplasts ,Primary endosymbiosis ,Hidden cyanobacterial lineage ,Membrane origin ,food and beverages ,Plant Science ,Biology ,biology.organism_classification ,Genome ,Chloroplast membrane ,Regular Paper – Taxonomy/Phylogenetics/Evolutionary Biology ,Glycolipid biosynthesis ,Chloroplast ,Lipid biosynthesis ,Photosynthesis ,Symbiosis ,Gene ,Phylogeny ,Host-directed chloroplast formation - Abstract
The paradigm “cyanobacterial origin of chloroplasts” is currently viewed as an established fact. However, we may have to re-consider the origin of chloroplast membranes, because membranes are not replicated by their own. It is the genes for lipid biosynthetic enzymes that are inherited. In the current understandings, these enzymes became encoded by the nuclear genome as a result of endosymbiotic gene transfer from the endosymbiont. However, we previously showed that many enzymes involved in the synthesis of chloroplast peptidoglycan and glycolipids did not originate from cyanobacteria. Here I present results of comprehensive phylogenetic analysis of chloroplast enzymes involved in fatty acid and lipid biosynthesis, as well as additional chloroplast components related to photosynthesis and gene expression. Four types of phylogenetic relationship between chloroplast enzymes (encoded by the chloroplast and nuclear genomes) and cyanobacterial counterparts were found: type 1, chloroplast enzymes diverged from inside of cyanobacterial clade; type 2, chloroplast and cyanobacterial enzymes are sister groups; type 3, chloroplast enzymes originated from homologs of bacteria other than cyanobacteria; type 4, chloroplast enzymes diverged from eukaryotic homologs. Estimation of evolutionary distances suggested that the acquisition times of chloroplast enzymes were diverse, indicating that multiple gene transfers accounted for the chloroplast enzymes analyzed. Based on the results, I try to relax the tight logic of the endosymbiotic origin of chloroplasts involving a single endosymbiotic event by proposing alternative hypotheses. The hypothesis of host-directed chloroplast formation proposes that glycolipid synthesis ability had been acquired by the eukaryotic host before the acquisition of chloroplast ribosomes. Chloroplast membrane system could have been provided by the host, whereas cyanobacteria contributed to the genes for the genetic and photosynthesis systems, at various times, either before or after the formation of chloroplast membranes. The origin(s) of chloroplasts seems to be more complicated than the single event of primary endosymbiosis. Electronic supplementary material The online version of this article (10.1007/s10265-019-01157-z) contains supplementary material, which is available to authorized users.
- Published
- 2019
18. Candidate genes underlying the quantitative trait loci for root-knot nematode resistance in a Cucumis hystrix introgression line of cucumber based on population sequencing
- Author
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Chunyan Cheng, Shuqiong Yang, Xuejiao Liu, Ji Li, Xiaqing Yu, Jinfeng Chen, Qunfeng Lou, Chuntao Qian, and Xing Wang
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0106 biological sciences ,0301 basic medicine ,Candidate gene ,Bin map ,QTL ,Population ,Quantitative Trait Loci ,Introgression ,SNP ,Plant Science ,Quantitative trait locus ,Plant disease resistance ,Genes, Plant ,01 natural sciences ,03 medical and health sciences ,Meloidogyne incognita ,Regular Paper ,Root-knot nematode ,Animals ,Tylenchoidea ,education ,Disease Resistance ,Plant Diseases ,Genetics ,education.field_of_study ,biology ,Cucumber ,Sequence Analysis, DNA ,biology.organism_classification ,030104 developmental biology ,Hybridization, Genetic ,Cucumis sativus ,Cucumis ,010606 plant biology & botany - Abstract
The southern root-knot nematode (RKN), Meloidogyne incognita (Kofoid & White) Chitwood, is one of most destructive species of plant parasitic nematodes, causing significant economic losses to numerous crops including cucumber (Cucumis sativus L. 2n = 14). No commercial cultivar is currently available with resistance to RKN, severely hindering the genetic improvement of RKN resistance in cucumber. An introgression line, IL10-1, derived from the interspecific hybridization between the wild species Cucumis hystrix Chakr. (2n = 24, HH) and cucumber, was identified with resistance to RKN. In this study, an ultrahigh-density genetic linkage bin-map, composed of high-quality single-nucleotide polymorphisms (SNPs), was constructed based on low-coverage sequences of the F2:6 recombinant inbred lines derived from the cross between inbred line IL10-1 and cultivar ‘Beijingjietou’ CC3 (hereinafter referred to as CC3). Three QTLs were identified accounting for 13.36% (qRKN1-1), 9.07% and 9.58% (qRKN5-1 and qRKN5-2) of the resistance variation, respectively. Finally, four genes with nonsynonymous SNPs from chromosome 5 were speculated to be the candidate RKN-resistant related genes, with annotation involved in disease resistance. Though several gaps still exist on the bin-map, our results could potentially be used in breeding programs and establish an understanding of the associated mechanisms underlying RKN resistance in cucumber. Electronic supplementary material The online version of this article (10.1007/s10265-019-01147-1) contains supplementary material, which is available to authorized users.
- Published
- 2019
19. Phylogenetic relationships among genera of Massonieae (Hyacinthaceae) inferred from plastid DNA and seed morphology.
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Pfosser, M., Wetschnig, W., Ungar, S., and Prenner, G.
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ASPARAGACEAE ,PLANT species ,SCILLA (Genus) ,PHYLOGENY ,SEEDS ,PLANT morphology - Abstract
The tribe Massonieae Baker (Hyacinthaceae-Hyacinthoideae) presently consists of about 19 genera and 230 species distributed from Africa (south of the Sahara) to Madagascar and India. Based on atpB and trnL-F DNA sequences the tribe is monophyletic only when the genus Pseudoprospero is excluded from Massonieae. In most trnL-F trees, this genus occupies a basal position within subfamily Hyacinthoideae and is sister to the rest of the subfamily. Molecular data suggest that the remaining genera of Massonieae do not share common ancestry with the Eurasian/North-African tribe Hyacintheae Dumort. (Scilla, Hyacinthus and allies), and thus a narrow concept of the essentially Eurasian genus Scilla is supported. Members of well-supported clades in Massonieae usually show similarities in seed characteristics as determined by scanning electron microscopy. Phylogenetic position and seed morphology indicate that Massonia angustifolia and M. zeyheri do not belong to the genus Massonia but fall into a clade together with Daubenya, Androsiphon and Amphisiphon. The genus Whiteheadia appears paraphyletic in the 50% majority rule trnL-F tree and occupies a basal position next to Massonia. However, in the strict consensus tree neither monophyly nor polyphyly can be excluded for this genus. Seed appendages are documented for members of the genera Ledebouria and Lachenalia. Within the genera of Massonieae there is a tendency towards bending of the seed axis. This phenomenon is most obvious within the genus Lachenalia. Delimitation of genera based on seed morphology largely agrees with the results of molecular studies. Correlation between number, size and color of seeds, geographical distribution and phylogenetic position of the genera are discussed. [ABSTRACT FROM AUTHOR]
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- 2003
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20. Virtual issue: phylogeographic studies in the Japanese Archipelago: from geographic patterns of genetic variation to biodiversity in plants.
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Ikeda, Hajime
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GENETIC variation ,PLANT variation ,ARCHIPELAGOES ,BIOGEOGRAPHY ,BIODIVERSITY ,GENETIC speciation - Abstract
Phylogeographic studies have investigated genetic variation and structure within species or closely related lineages and are fundamental for understanding factors and processes of genetic divergence as well as speciation. This virtual issue collects 35 papers on phylogeographic studies published in the Journal of Plant Research and focuses on three major topics in biodiversity: (1) biogeography, (2) systematics, and (3) evolution. [ABSTRACT FROM AUTHOR]
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- 2023
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21. Salicylic acid-induced ROS production by mitochondrial electron transport chain depends on the activity of mitochondrial hexokinases in tomato (Solanum lycopersicum L.)
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Irma Tari, András Szekeres, Péter Poór, Nikolett Bódi, Mária Bagyánszki, Gábor Patyi, and Zoltán Takács
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0106 biological sciences ,0301 basic medicine ,Mitochondrial ROS ,Programmed cell death ,Cell ,Cytochrome c ,Plant Science ,Biology ,Mitochondrion ,Nitric Oxide ,Solanum ,01 natural sciences ,Tomato ,Electron Transport ,03 medical and health sciences ,chemistry.chemical_compound ,Hexokinase ,Regular Paper ,medicine ,chemistry.chemical_classification ,Reactive oxygen species ,food and beverages ,Salicylic acid ,Mitochondria ,Cell biology ,Plant Leaves ,Glucose ,030104 developmental biology ,medicine.anatomical_structure ,chemistry ,Apoptosis ,biology.protein ,Reactive Oxygen Species ,010606 plant biology & botany - Abstract
The growth regulator, salicylic acid (SA) plays an important role in the induction of cell death in plants. Production of reactive oxygen species (ROS) by mitochondrial electron transport chain (mtETC), cytochrome c (cyt c) release from mitochondria and loss of mitochondrial integrity can be observed during cell death execution in plant tissues. The aim of this work was to study the putative role of hexokinases (HXKs) in the initiation of cell death using tomato (Solanum lycopersicum L.) leaves and mitochondria isolated from plants exposed to a sublethal, 0.1 mM and a cell death-inducing, 1 mM concentrations of SA. Both treatments enhanced ROS and nitric oxide (NO) production in the leaves, which contributed to a concentration-dependent loss of membrane integrity. Images prepared by transmission electron microscopy showed swelling and disorganisation of mitochondrial cristae and vacuolization of mitochondria after SA exposure. Using post-embedding immunohistochemistry, cyt c release from mitochondria was also detected after 1 mM SA treatment. Both SA treatments decreased the activity and transcript levels of HXKs in the leaves and the total mtHXK activity in the mitochondrial fraction. The role of mitochondrial hexokinases (mtHXKs) in ROS and NO production of isolated mitochondria was investigated by the addition of HXK substrate, glucose (Glc) and a specific HXK inhibitor, N-acetylglucosamine (NAG) to the mitochondrial suspension. Both SA treatments enhanced ROS production by mtETC in the presence of succinate and ADP, which was slightly inhibited by Glc and increased significantly by NAG in control and in 0.1 mM SA-treated mitochondria. These changes were not significant at 1 mM SA, which caused disorganisation of mitochondrial membranes. Thus the inhibition of mtHXK activity can contribute to the mitochondrial ROS production, but it is not involved in NO generation in SA-treated leaf mitochondria suggesting that SA can promote cell death by suppressing mtHXK transcription and activity.
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- 2019
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22. Correction to: Population genetic structure and demography of Magnolia kobus: variety borealis is not supported genetically
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Naomichi Kawashima, Nobuhiro Tomaru, Ichiro Tamaki, Suzuki Setsuko, Jung-Hyun Lee, Kyohei Yukitoshi, and Akemi Itaya
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education.field_of_study ,Ecology ,Chloroplast DNA sequences ,Leaf morphology ,Population ,Magnolia kobus ,Plant Science ,Conservation ,Biology ,biology.organism_classification ,Plant ecology ,Plant biochemistry ,Genetic structure ,Ecological niche modeling ,Regular Paper ,Approximate Bayesian computation ,education ,Microsatellites - Abstract
Species delimitations by morphological and by genetic markers are not always congruent. Magnolia kobus consists of two morphologically different varieties, kobus and borealis. The latter variety is characterized by larger leaves than the former. For the conservation of M. kobus genetic resources in natural forests, the relationships between morphological and genetic variation should be clarified. We investigated variations in nuclear microsatellites, chloroplast DNA (cpDNA) sequences and leaf morphological traits in 23 populations of M. kobus over the range of species. Two genetically divergent lineages, northern and southern were detected and their geographical boundary was estimated to be at 39°N. The northern lineage consisted of two genetic clusters and a single cpDNA haplotype, while the southern one had multiple genetic clusters and cpDNA haplotypes. The northern lineage showed significantly lower genetic diversity than the southern. Approximate Bayesian computation indicated that the northern and southern lineages had experienced, respectively, population expansion and long-term stable population size. The divergence time between the two lineages was estimated to be 565,000 years ago and no signature of migration between the two lineages after divergence was detected. Ecological niche modeling showed that the potential distribution area in northern Japan at the last glacial maximum was very small. It is thus considered that the two lineages have experienced different population histories over several glacial-inter-glacial cycles. Individuals of populations in the central to northern part of Honshu on the Sea of Japan side and in Hokkaido had large leaf width and area. These leaf characteristics corresponded with those of variety borealis. However, the delimitation of the northern and southern lineages detected by genetic markers (39°N) was not congruent with that detected by leaf morphologies (36°N). It is therefore suggested that variety borealis is not supported genetically and the northern and southern lineages should be considered separately when identifying conservation units based not on morphology but on genetic markers. Electronic supplementary material The online version of this article (10.1007/s10265-019-01134-6) contains supplementary material, which is available to authorized users.
- Published
- 2020
23. Cell cycle inhibitors improve seed storability after priming treatments
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Naoto Sano, Mitsunori Seo, Institut Jean-Pierre Bourgin (IJPB), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Université Paris Saclay (COmUE), RIKEN Center for Sustainable Resource Science [Yokohama] (RIKEN CSRS), RIKEN - Institute of Physical and Chemical Research [Japon] (RIKEN), and RIKEN Special Postdoctoral Researcher Program
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0106 biological sciences ,0301 basic medicine ,Aphidicolin ,[SDV]Life Sciences [q-bio] ,Longevity ,Plant Science ,Priming (agriculture) ,Biology ,Cell cycle ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,[SDV.IDA]Life Sciences [q-bio]/Food engineering ,Regular Paper ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,[SPI.GPROC]Engineering Sciences [physics]/Chemical and Process Engineering ,Seed desiccation ,2. Zero hunger ,Chemical screening ,Plant physiology ,food and beverages ,Metabolism ,Oryzalin ,Seed germination ,Horticulture ,030104 developmental biology ,chemistry ,Germination ,Priming ,Mimosine ,010606 plant biology & botany - Abstract
Seed priming is a treatment that controls seed water content to partially activate germination processes such as metabolism but prevents full germination of the seeds. The treatment is well known to enhance seed performance, including germination, but sometimes reduces seed storability or longevity as a side effect. Toward developing a novel priming technique that can maintain seed longevity for a longer time period, chemicals that suppress the seed deterioration under a controlled condition were screened from 80 known biologically active compounds contained in the RIKEN NPDepo authentic library using Arabidopsis thaliana seeds. Seeds primed with mimosine, a cell cycle inhibitor, retained higher survival rate after a controlled deterioration treatment compared to seeds primed without the chemical. In addition, other cell cycle inhibitors such as aphidicolin, hydroxyurea and oryzalin had similar effects on the seed storability after priming. Our results suggest that progression of the cell cycle during priming is an important checkpoint that determines the storability of seeds after the treatment. Electronic supplementary material The online version of this article (10.1007/s10265-018-01084-5) contains supplementary material, which is available to authorized users.
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- 2019
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24. Sucrose affects the developmental transition of rhizomes in Oryza longistaminata
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Jovano Erris Nugroho, Hirono Kondo, Rosalyn B. Angeles-Shim, Motoyuki Ashikari, and Kanako Bessho-Uehara
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0106 biological sciences ,0301 basic medicine ,Sucrose ,Oryza longistaminata ,Gravitropism ,Plant Science ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Botany ,Regular Paper ,Sugar ,Abiotic component ,biology ,fungi ,food and beverages ,Plant physiology ,biology.organism_classification ,Rhizome ,030104 developmental biology ,chemistry ,Plant hormone ,Developmental transition ,010606 plant biology & botany - Abstract
Oryza longistaminata, the African wild rice, can propagate vegetatively through rhizomes. Rhizomes elongate horizontally underground as sink organs, however, they undergo a developmental transition that shifts their growth to the surface of the ground to become aerial stems. This particular stage is essential for the establishment of new ramets. While several determinants such as abiotic stimuli and plant hormones have been reported as key factors effecting developmental transition in aerial stem, the cause of this phenomenon in rhizome remains elusive. This study shows that depletion of nutrients, particularly sucrose, is the key stimulus that induces the developmental transition in rhizomes, as indicated by the gradient of sugars from the base to the tip of the rhizome. Sugar treatments revealed that sucrose specifically represses the developmental transition from rhizome to aerial stem by inhibiting the expression of sugar metabolism and hormone synthesis genes at the bending point. Sucrose depletion affected several factors contributing to the developmental transition of rhizome including signal transduction, transcriptional regulation and plant hormone balance. Electronic supplementary material The online version of this article (10.1007/s10265-018-1033-x) contains supplementary material, which is available to authorized users.
- Published
- 2018
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25. Biomass dynamics in a logged forest: the role of wood density
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Niels P. R. Anten, Vu Thanh Nam, and Marijke van Kuijk
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0106 biological sciences ,Demographic rates ,Population ,Plant Science ,Carbon sequestration ,Biology ,Forests ,010603 evolutionary biology ,01 natural sciences ,Trees ,Carbon dynamics ,Tropical forest ,Tropical climate ,Regular Paper ,Biomass ,education ,Relative species abundance ,education.field_of_study ,Biomass (ecology) ,Tropical Climate ,Models, Statistical ,Diameter at breast height ,Forestry ,Interspecific competition ,PE&RC ,Wood ,Carbon ,Plant ecology ,Agronomy ,Vietnam ,Crop and Weed Ecology ,010606 plant biology & botany - Abstract
Wood density (WD) is believed to be a key trait in driving growth strategies of tropical forest species, and as it entails the amount of mass per volume of wood, it also tends to correlate with forest carbon stocks. Yet there is relatively little information on how interspecific variation in WD correlates with biomass dynamics at the species and population level. We determined changes in biomass in permanent plots in a logged forest in Vietnam from 2004 to 2012, a period representing the last 8 years of a 30 years logging cycle. We measured diameter at breast height (DBH) and estimated aboveground biomass (AGB) growth, mortality, and net AGB increment (the difference between AGB gains and losses through growth and mortality) per species at the individual and population (i.e. corrected for species abundance) level, and correlated these with WD. At the population level, mean net AGB increment rates were 6.47 Mg ha−1 year−1 resulting from a mean AGB growth of 8.30 Mg ha−1 year−1, AGB recruitment of 0.67 Mg ha−1 year−1 and AGB losses through mortality of 2.50 Mg ha−1 year−1. Across species there was a negative relationship between WD and mortality rate, WD and DBH growth rate, and a positive relationship between WD and tree standing biomass. Standing biomass in turn was positively related to AGB growth, and net AGB increment both at the individual and population level. Our findings support the view that high wood density species contribute more to total biomass and indirectly to biomass increment than low wood density species in tropical forests. Maintaining high wood density species thus has potential to increase biomass recovery and carbon sequestration after logging. Electronic supplementary material The online version of this article (10.1007/s10265-018-1042-9) contains supplementary material, which is available to authorized users.
- Published
- 2018
26. 2023 Awards in the Journal of Plant Research.
- Author
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Katsuhara, Maki
- Subjects
PERIODICAL awards ,TREE growth ,FOREST dynamics ,LITERARY prizes ,GENOME-wide association studies - Published
- 2023
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27. Hydrogen photoproduction in green algae Chlamydomonas reinhardtii sustainable over 2 weeks with the original cell culture without supply of fresh cells nor exchange of the whole culture medium
- Author
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Takumi Isono, Daisuke Momose, Shigeru Mineki, Kyohei Yamashita, Takafumi Yagi, Norihide Okada, and Eiji Tokunaga
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0301 basic medicine ,Time Factors ,Light ,Hydrogen ,Cell Culture Techniques ,chemistry.chemical_element ,Chlamydomonas reinhardtii ,02 engineering and technology ,Plant Science ,03 medical and health sciences ,Botany ,Hydrogen production ,biology ,Spectrum Analysis ,Plant physiology ,021001 nanoscience & nanotechnology ,Pulp and paper industry ,biology.organism_classification ,Culture Media ,030104 developmental biology ,chemistry ,Cell culture ,Green algae ,Desiccator ,0210 nano-technology ,Anaerobic exercise ,Sulfur - Abstract
Unicellular green algae Chlamydomonas reinhardtii are known to make hydrogen photoproduction under the anaerobic condition with water molecules as the hydrogen source. Since the hydrogen photoproduction occurs for a cell to circumvent crisis of its survival, it is only temporary. It is a challenge to realize persistent hydrogen production because the cells must withstand stressful conditions to survive with alternation of generations in the cell culture. In this paper, we have found a simple and cost-effective method to sustain the hydrogen production over 14 days in the original culture, without supply of fresh cells nor exchange of the culture medium. This is achieved for the cells under hydrogen production in a sulfur-deprived culture solution on the {anaerobic, intense light} condition in a desiccator, by periodically providing a short period of the recovery time (2 h) with a small amount of TAP(+S) supplied outside of the desiccator. As this operation is repeated, the response time of transition into hydrogen production (preparation time) is shortened and the rate of hydrogen production (build up time) is increased. The optimum states of these properties favorable to the hydrogen production are attained in a few days and stably sustained for more than 10 days. Since generations are alternated during this consecutive hydrogen production experiment, it is suggested that the improved hydrogen production properties are inherited to next generations without genetic mutation. The properties are reset only when the cells are placed on the {sulfur-sufficient, aerobic, moderate light} conditions for a long time (more than 1 day at least).
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- 2016
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28. Light energy partitioning, photosynthetic efficiency and biomass allocation in invasive Prunus serotina and native Quercus petraea in relation to light environment, competition and allelopathy
- Author
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Kerrie M. Sendall, Piotr Robakowski, and Ernest Bielinis
- Subjects
0106 biological sciences ,Light ,Nitrogen ,Acclimation to light ,Acclimatization ,Net CO2 assimilation rate ,Plant Science ,Biology ,Photosynthetic efficiency ,Environment ,Photosynthesis ,010603 evolutionary biology ,01 natural sciences ,Quercus ,Relative growth rate ,Chlorophyll a fluorescence ,Regular Paper ,Biomass ,Allelopathy ,Prunus serotina ,Competition ,Interspecific competition ,Carbon Dioxide ,Models, Theoretical ,biology.organism_classification ,Plant ecology ,Plant Leaves ,Agronomy ,Energy partitioning ,Seedlings ,Quercus petraea ,Prunus ,Energy Metabolism ,Introduced Species ,010606 plant biology & botany - Abstract
This study addressed whether competition under different light environments was reflected by changes in leaf absorbed light energy partitioning, photosynthetic efficiency, relative growth rate and biomass allocation in invasive and native competitors. Additionally, a potential allelopathic effect of mulching with invasive Prunus serotina leaves on native Quercus petraea growth and photosynthesis was tested. The effect of light environment on leaf absorbed light energy partitioning and photosynthetic characteristics was more pronounced than the effects of interspecific competition and allelopathy. The quantum yield of PSII of invasive P. serotina increased in the presence of a competitor, indicating a higher plasticity in energy partitioning for the invasive over the native Q. petraea, giving it a competitive advantage. The most striking difference between the two study species was the higher crown-level net CO2 assimilation rates (Acrown) of P. serotina compared with Q. petraea. At the juvenile life stage, higher relative growth rate and higher biomass allocation to foliage allowed P. serotina to absorb and use light energy for photosynthesis more efficiently than Q. petraea. Species-specific strategies of growth, biomass allocation, light energy partitioning and photosynthetic efficiency varied with the light environment and gave an advantage to the invader over its native competitor in competition for light. However, higher biomass allocation to roots in Q. petraea allows for greater belowground competition for water and nutrients as compared to P. serotina. This niche differentiation may compensate for the lower aboveground competitiveness of the native species and explain its ability to co-occur with the invasive competitor in natural forest settings. Electronic supplementary material The online version of this article (10.1007/s10265-018-1009-x) contains supplementary material, which is available to authorized users.
- Published
- 2018
29. Space–time analysis of gravitropism in etiolated Arabidopsis hypocotyls using bioluminescence imaging of the IAA19 promoter fusion with a destabilized luciferase reporter
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Soichirou Satoh, Kotaro T. Yamamoto, Jun Matsuzaki, Hisayo Shimizu, and Masaaki K. Watahiki
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0106 biological sciences ,0301 basic medicine ,Gravitropism ,Arabidopsis ,Aux/IAA ,Plant Science ,Biology ,Curvature ,01 natural sciences ,Hypocotyl ,03 medical and health sciences ,Auxin ,Botany ,Regular Paper ,Luciferase ,Bioluminescence imaging ,chemistry.chemical_classification ,fungi ,food and beverages ,biology.organism_classification ,030104 developmental biology ,chemistry ,Law of sines ,Etiolation ,Biophysics ,010606 plant biology & botany - Abstract
Imaging analysis was carried out during the gravitropic response of etiolated Arabidopsis hypocotyls, using an IAA19 promoter fusion of destabilized luciferase as a probe. From the bright-field images we obtained the local deflection angle to the vertical, A, local curvature, C, and the partial derivative of C with respect to time, \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\partial C/\partial t$$\end{document}∂C/∂t. These were determined every 19.9 µm along the curvilinear length of the hypocotyl, at ~10 min intervals over a period of ~6 h after turning hypocotyls through 90° to the horizontal. Similarly from the luminescence images we measured the luminescence intensity of the convex and concave flanks of the hypocotyl as well as along the median of the hypocotyl, to determine differential expression of auxin-inducible IAA19. Comparison of these parameters as a function of time and curvilinear length shows that the gravitropic response is composed of three successive elements: the first and second curving responses and a decurving response (autostraightening). The maximum of the first curving response occurs when A is 76° along the entire length of the hypocotyl, suggesting that A is the sole determinant in this response; in contrast, the decurving response is a function of both A and C, as predicted by the newly-proposed graviproprioception model (Bastien et al., Proc Natl Acad Sci USA 110:755–760, 2013). Further, differential expression of IAA19, with higher expression in the convex flank, is observed at A = 44°, and follows the Sachs’ sine law. This also suggests that IAA19 is not involved in the first curving response. In summary, the gravitropic response of Arabidopsis hypocotyls consists of multiple elements that are each determined by separate principles. Electronic supplementary material The online version of this article (doi:10.1007/s10265-017-0932-6) contains supplementary material, which is available to authorized users.
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- 2017
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30. Transition from C
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Takayuki Yabiku, Osamu Ueno, Yuki Yorimitsu, Aya Kadosono, and Yuto Hatakeyama
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0106 biological sciences ,0301 basic medicine ,C3–C4 intermediate plant ,Plant Science ,Photosynthesis ,01 natural sciences ,03 medical and health sciences ,Chenopodium ,Genus ,Botany ,Regular Paper ,Proto-Kranz plant ,Chenopodiaceae ,Plant Proteins ,biology ,Leaf anatomy ,Plant physiology ,Correction ,Glycine decarboxylase ,biology.organism_classification ,CO2 compensation point ,Glycine Dehydrogenase (Decarboxylating) ,Biological Evolution ,Chloroplast ,Plant Leaves ,030104 developmental biology ,Compensation point ,Glycine ,010606 plant biology & botany - Abstract
The Chenopodiaceae is one of the families including C4 species among eudicots. In this family, the genus Chenopodium is considered to include only C3 species. However, we report here a transition from C3 photosynthesis to proto-Kranz to C3–C4 intermediate type in Chenopodium. We investigated leaf anatomical and photosynthetic traits of 15 species, of which 8 species showed non-Kranz anatomy and a CO2 compensation point (Γ) typical of C3 plants. However, 5 species showed proto-Kranz anatomy and a C3-like Γ, whereas C. strictum showed leaf anatomy and a Γ typical of C3–C4 intermediates. Chenopodium album accessions examined included both proto-Kranz and C3–C4 intermediate types, depending on locality. Glycine decarboxylase, a key photorespiratory enzyme that is involved in the decarboxylation of glycine, was located predominantly in the mesophyll (M) cells of C3 species, in both M and bundle-sheath (BS) cells in proto-Kranz species, and exclusively in BS cells in C3–C4 intermediate species. The M/BS tissue area ratio, number of chloroplasts and mitochondria per BS cell, distribution of these organelles to the centripetal region of BS cells, the degree of inner positioning (vacuolar side of chloroplasts) of mitochondria in M cells, and the size of BS mitochondria also changed with the change in glycine decarboxylase localization. All Chenopodium species examined were C3-like regarding activities and amounts of C3 and C4 photosynthetic enzymes and δ13C values, suggesting that these species perform photosynthesis without contribution of the C4 cycle. This study demonstrates that Chenopodium is not a C3 genus and is valuable for studying evolution of C3–C4 intermediates. Electronic supplementary material The online version of this article (10.1007/s10265-019-01135-5) contains supplementary material, which is available to authorized users.
- Published
- 2019
31. Flavonoids in translucent bracts of the Himalayan Rheum nobile (Polygonaceae) as ultraviolet shields
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Junichi Kitajima, Shinobu Akiyama, Toshisada Suzuki, Hideaki Ohba, Tsukasa Iwashina, and Yuji Omori
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Flavonoids ,chemistry.chemical_classification ,Bract ,Chromatography ,Molecular Structure ,biology ,Chromatography, Paper ,Ultraviolet Rays ,Flavonoid ,Glycoside ,Plant Science ,biology.organism_classification ,Polygonaceae ,chemistry.chemical_compound ,Rheum nobile ,Paper chromatography ,chemistry ,Botany ,Kaempferol ,Quercetin ,Chromatography, High Pressure Liquid - Abstract
UV-absorbing substances were isolated from the translucent bracts of Rheum nobile, which grows in the alpine zone of the eastern Himalayas. Nine kinds of the UV-absorbing substances were found by high performance liquid chromatography (HPLC) and paper chromatography (PC) surveys. All of the five major compounds are flavonoids, and were identified as quercetin 3- O-glucoside, quercetin 3- O-galactoside, quercetin 3- O-rutinoside, quercetin 3- O-arabinoside and quercetin 3- O-[6"-(3-hydroxy-3-methylglutaroyl)-glucoside] by UV, 1H and 13C NMR, mass spectra, and acid hydrolysis of the original glycosides, and direct PC and HPLC comparisons with authentic specimens. The four minor compounds were characterised as quercetin itself, quercetin 7- O-glycoside, kaempferol glycoside and feruloyl ester. Of those compounds, quercetin 3- O-[6"-(3-hydroxy-3-methylglutaroyl)-glucoside] was found in nature for the first time. The translucent bracts of R. nobile accumulate a substantial quantity of flavonoids (3.3-5 mg per g dry material for the major compounds). Moreover, it was clarified by quantitative HPLC survey that much more of the UV-absorbing substances is present in the bracts than in rosulate leaves. Although the flavonoid compounds have been presumed to be the important UV shields in higher plants, there has been little characterisation of these compounds. In this paper, the UV-absorbing substances of the Himalayan R. nobile were characterised as flavonol glycosides based on quercetin.
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- 2004
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32. 2021 Awards in the Journal of Plant Research.
- Author
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Katsuhara, Maki
- Subjects
LEGUMES ,ANDROGRAPHIS paniculata ,RHIZOBIUM ,LITERARY prizes ,CHLOROPLAST formation - Abstract
In Sato's paper ([2]), a large-scale phylogenetic analysis was conducted and four types of phylogenetic relationships between chloroplast enzymes (encoded by the chloroplast and nuclear genomes) and cyanobacterial counterparts were found: Type 1, chloroplast enzymes diverged from inside of cyanobacterial clade; Type 2, chloroplast and cyanobacterial enzymes are sister groups; Type 3, chloroplast enzymes originated from homologs of bacteria other than cyanobacteria; Type 4, chloroplast enzymes diverged from eukaryotic homologs. There are many chloroplast membrane lipid synthases and photosynthesis-related enzymes that originated outside of cyanobacteria. Sato ([2]) proposes that the host-directed chloroplast formation hypothesis, in which host eukaryotes prepared the membrane lipid synthesis system in advance, should be important for re-examining the origin of chloroplasts. [Extracted from the article]
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- 2021
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33. Functional screening of a cDNA library from the desiccation-tolerant plant Selaginella lepidophylla in yeast mutants identifies trehalose biosynthesis genes of plant and microbial origin
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Suzana Pampurova, Patrick Van Dijck, Katrien Verschooten, and Nelson Avonce
- Subjects
Selaginellaceae ,Selaginella lepidophylla ,Desiccation tolerance ,Saccharomyces cerevisiae ,Plant Science ,TPS ,TPP ,chemistry.chemical_compound ,Botany ,Regular Paper ,Endophytes ,Arabidopsis thaliana ,Desiccation ,Gene Library ,biology ,Organisms, Genetically Modified ,fungi ,Plant physiology ,food and beverages ,Trehalose ,biology.organism_classification ,Yeast ,chemistry ,Biochemistry ,Glucosyltransferases - Abstract
Trehalose is a non-reducing disaccharide that accumulates to large quantities in microbial cells, but in plants it is generally present in very low, barely-detectible levels. A notable exception is the desiccation-tolerant plant Selaginella lepidophylla, which accumulates very high levels of trehalose in both the hydrated and dehydrated state. As trehalose is known to protect membranes, proteins, and whole cells against dehydration stress, we have been interested in the characterization of the trehalose biosynthesis enzymes of S. lepidophylla; they could assist in engineering crop plants towards better stress tolerance. We previously isolated and characterized trehalose-6-phosphate synthases from Arabidopsis thaliana (desiccation sensitive) and S. lepidophylla (desiccation tolerant) and found that they had similar enzymatic characteristics. In this paper, we describe the isolation and characterization of trehalose-6-phosphate phosphatase from S. lepidophylla and show that its catalytic activities are also similar to those of its homolog in A. thaliana. Screening of an S. lepidophylla cDNA library using yeast trehalose biosynthesis mutants resulted in the isolation of a large number of trehalose biosynthesis genes that were of microbial rather than plant origin. Thus, we suggest that the high trehalose levels observed in S. lepidophylla are not the product of the plant but that of endophytes, which are known to be present in this plant. Additionally, the high trehalose levels in S. lepidophylla are unlikely to account for its desiccation tolerance, because its drought-stress-sensitive relative, S. moellendorffii, also accumulated high levels of trehalose.
- Published
- 2014
34. A hypergravity environment increases chloroplast size, photosynthesis, and plant growth in the moss Physcomitrella patens
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Atsushi Kume, Kaori Takemura, Yuko T. Hanba, Hiroyuki Kamachi, Tomomichi Fujita, and Ichirou Karahara
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0106 biological sciences ,0301 basic medicine ,Chloroplasts ,Evolution ,Population ,Centrifugation ,Hypergravity ,Plant Science ,Environment ,Biology ,Physcomitrella patens ,Photosynthesis ,01 natural sciences ,03 medical and health sciences ,Botany ,Regular Paper ,education ,Gametophore ,education.field_of_study ,Cell wall ,fungi ,Correction ,food and beverages ,Plant physiology ,Carbon Dioxide ,biology.organism_classification ,Bryopsida ,Plant Leaves ,Phenotype ,030104 developmental biology ,Rhizoid ,Bryophyte ,CO2 diffusion ,010606 plant biology & botany - Abstract
The physiological and anatomical responses of bryophytes to altered gravity conditions will provide crucial information for estimating how plant physiological traits have evolved to adapt to significant increases in the effects of gravity in land plant history. We quantified changes in plant growth and photosynthesis in the model plant of mosses, Physcomitrella patens, grown under a hypergravity environment for 25 days or 8 weeks using a custom-built centrifuge equipped with a lighting system. This is the first study to examine the response of bryophytes to hypergravity conditions. Canopy-based plant growth was significantly increased at 10×g, and was strongly affected by increases in plant numbers. Rhizoid lengths for individual gametophores were significantly increased at 10×g. Chloroplast diameters (major axis) and thicknesses (minor axis) in the leaves of P. patens were also increased at 10×g. The area-based photosynthesis rate of P. patens was also enhanced at 10×g. Increases in shoot numbers and chloroplast sizes may elevate the area-based photosynthesis rate under hypergravity conditions. We observed a decrease in leaf cell wall thickness under hypergravity conditions, which is in contrast to previous findings obtained using angiosperms. Since mosses including P. patens live in dense populations, an increase in canopy-based plant numbers may be effective to enhance the toughness of the population, and, thus, represents an effective adaptation strategy to a hypergravity environment for P. patens.
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- 2016
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35. Interaction with gravitropism, reversibility and lateral movements of phototropically stimulated potato shoots
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Branka Vinterhalter, Mariana Stanišić, Živko Jovanović, Dragan Vinterhalter, and Jelena Savić
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0106 biological sciences ,0301 basic medicine ,Light ,Gravitropism ,Plant Science ,Biology ,01 natural sciences ,Solanum tuberosum L ,03 medical and health sciences ,Light source ,Reversibility ,Tropic interactions ,Long period ,Botany ,Regular Paper ,Phototropism ,Growth room ,Solanum tuberosum ,Blue light ,food and beverages ,Biomechanical Phenomena ,030104 developmental biology ,Shoot ,Plant biochemistry ,Biophysics ,Plant Shoots ,010606 plant biology & botany - Abstract
Phototropic (PT) and gravitropic (GT) bending are the two major tropic movements that determine the spatial position of potato shoots. We studied PT bending of potato plantlets grown under long-day photoperiods in several prearranged position setups providing different interactions with the GT response. Starting with the standard PT stimulation setup composed of unilateral irradiation of vertically positioned shoots, experiments were also done in antagonistic and synergistic setups and in treatments with horizontal displacement of the light source. In the standard setup, PT bending suppressed the GT bending, which could occur only if the PT stimulation was cancelled. The antagonistic position, with phototropism and gravitropism attempting to bend shoots in opposite directions, showed phototropism and gravitropism as independent bending events with the outcome varying throughout the day reflecting diurnal changes in the competence of individual tropic components. Whilst gravitropism was constant, phototropism had a marked daily fluctuation of its magnitude with a prominent morning maximum starting an hour after the dawn in the growth room and lasting for the next 6 h. When phototropism and gravitropism were aligned in a synergistic position, stimulating shoot bending in the same direction, there was little quantitative addition of their individual effects. The long period of morning PT bending maximum enabled multiple PT bending events to be conducted in succession, each one preceded by a separate lag phase. Studies of secondary PT events showed that potato plantlets can follow and adjust their shoot position in response to both vertical and horizontal movements of a light source. PT bending was reversible, since the 180° horizontal change of a blue light (BL) source position resulted in reversal of bending direction after a 20-min-long lag phase. Electronic supplementary material The online version of this article (doi:10.1007/s10265-016-0821-4) contains supplementary material, which is available to authorized users.
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- 2016
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36. Correction to: Extraforal nectary-bearing plant Mallotus japonicus uses diferent types of extraforal nectaries to establish efective defense by ants
- Author
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Nobuhiko Suzuki, Akira Yamawo, and Jun Tagawa
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EFN ,Plant Nectar ,Ants ,Ant–plant mutualism ,Correction ,Plant physiology ,Plant Science ,Spodoptera ,Biology ,biology.organism_classification ,Induced defense ,Plant Leaves ,Plant ecology ,Mallotus Plant ,Botany ,Plant biochemistry ,Regular Paper ,Leaf damage ,Animals ,Nectar ,Mallotus japonicus ,Biotic defense ,Herbivory - Abstract
Extrafloral nectary (EFN)-bearing plants attract ants to gain protection against herbivores. Some EFN-bearing plants possess different types of EFNs, which might have different effects on ants on the plants. Mallotus japonicus (Thunb.) Muell. Arg. (Euphorbiaceae) bears two types of EFNs, including a pair of large EFNs at the leaf base and many small EFNs along the leaf edge. This study aimed to determine the different roles of the two types of EFNs in biotic defense by ants. A field experiment was conducted to investigate the effect of leaf damage on EFN production and on the distribution pattern of ants. After leaf damage, the number of leaf edge EFNs increased in the leaves first-produced. The number of ants on the leaves also increased, and the foraging area of ants extended from the leaf base to the leaf tip. An EFN-covering field experiment revealed that leaf edge EFNs had a greater effect than leaf base EFNs on ant dispersal on leaves. The extended foraging area of ants resulted in an increase of encounter or attack rate against an experimentally placed herbivore, Spodoptera litura. These results suggest that M. japonicus plants control the foraging area of ants on their leaves using different types of EFNs in response to leaf damage, thus achieving a very effective biotic defense against herbivores by ants. Electronic supplementary material The online version of this article (10.1007/s10265-019-01119-5) contains supplementary material, which is available to authorized users.
- Published
- 2020
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37. Correction to: Heat and chilling stress induce nucleolus morphological changes
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Kohma Hayashi and Sachihiro Matsunaga
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5-Ethynyl uridine ,Nucleolus ,Cold-Shock Response ,genetic processes ,fungi ,Nucleolus cavity ,Arabidopsis ,food and beverages ,Correction ,macromolecular substances ,Plant Science ,Biology ,environment and public health ,Heat stress ,Chilling stress ,Plant biochemistry ,Botany ,Regular Paper ,Uridine ,Cell Nucleolus ,Heat-Shock Response - Abstract
The nucleolus, where components of the ribosome are constructed, is known to play an important role in various stress responses in animals. However, little is known about the role of the plant nucleolus under environmental stresses such as heat and chilling stress. In this study, we analyzed nucleolus morphology by determining the distribution of newly synthesized rRNAs with an analog of uridine, 5-ethynyl uridine (EU). When EU was incorporated into the root of the Arabidopsis thaliana, EU signals were strongly localized in the nucleolus. The results of the short-term incorporation of EU implied that there is no compartmentation among the processes of transcription, processing, and construction of rRNAs. Nevertheless, under heat and chilling stress, EU was not incorporated into the center of the nucleolus. Morphological analyses using whole rRNA staining and differential interference contrast observations revealed speckled and round structures in the center of the nucleolus under heat and chilling stress, respectively.
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- 2020
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38. Trait-dependent resemblance of the flowering phenology and floral morphology of the allopolyploid Cardamine flexuosa to those of the parental diploids in natural habitats
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Reiko Akiyama, Rie Shimizu-Inatsugi, Matthias Leutenegger, Stefan Milosavljevic, University of Zurich, and Shimizu-Inatsugi, Rie
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Range (biology) ,Polyploid ,Plant Science ,Flowers ,Self-Fertilization ,Cardamine · Floral morphology · Flowering phenology · Polyploid · Reproductive traits · Trait variation ,Biology ,UFSP13-7 Evolution in Action: From Genomes to Ecosystems ,Polyploidy ,10127 Institute of Evolutionary Biology and Environmental Studies ,1110 Plant Science ,Botany ,Trait variation ,Ecosystem ,Cardamine flexuosa ,Phenology ,fungi ,Floral morphology ,food and beverages ,Reproductive isolation ,Mating system ,biology.organism_classification ,Diploidy ,Regular Paper – Taxonomy/Phylogenetics/Evolutionary Biology ,Phenotype ,Reproductive traits ,Flowering phenology ,570 Life sciences ,biology ,590 Animals (Zoology) ,Cardamine ,Petal ,Switzerland - Abstract
Allopolyploids possess complete sets of genomes derived from different parental species and exhibit a range of variation in various traits. Reproductive traits may play a key role in the reproductive isolation between allopolyploids and their parental species, thus affecting the thriving of allopolyploids. However, empirical data, especially in natural habitats, comparing reproductive trait variation between allopolyploids and their parental species remain rare. Here, we documented the flowering phenology and floral morphology of the allopolyploid wild plantCardamine flexuosaand its diploid parentsC. amaraandC. hirsutain their native range in Switzerland. The flowering ofC. flexuosastarted at an intermediate time compared with those of the parents and the flowering period ofC. flexuosaoverlapped with those of the parents.Cardamine flexuosaresembledC. hirsutain the size of flowers and petals and the length/width ratio of petals, while it resembledC. amarain the length/width ratio of flowers. These results provide empirical evidence of the trait-dependent variation of allopolyploid phenotypes in natural habitats at the local scale. They also suggest that the variation in some reproductive traits inC. flexuosais associated with self-fertilization. Therefore, it is helpful to consider the mating system in furthering the understanding of the processes that may have shaped trait variation in polyploids in nature.
- Published
- 2018
39. Glutamate functions in stomatal closure in Arabidopsis and fava bean
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Riichiro Yoshida, Fumika Miyata, Yudai Shichiri, Kenji Honda, Nobuto Kamizono, Izumi C. Mori, Sumio Iwai, and Tetsuo Shimatani
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0106 biological sciences ,0301 basic medicine ,Arabidopis thaliana ,Mutant ,Arabidopsis ,Glutamic Acid ,Plant Science ,Biology ,Signal transduction ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Stomatal closure ,Guard cell ,Botany ,Regular Paper ,Protein phosphorylation ,Protein kinase A ,Abscisic acid ,Plant Proteins ,food and beverages ,Glutamate receptor ,Glutamic acid ,biology.organism_classification ,Cell biology ,Vicia faba ,030104 developmental biology ,Receptors, Glutamate ,chemistry ,Plant Stomata ,Erratum ,Glutamate ,010606 plant biology & botany - Abstract
Guard cells are indispensable for higher plants because they control gas exchange and water balance to maintain photosynthetic activity. The signaling processes that govern their movement are controlled by several factors, such as abscisic acid (ABA), blue light, pathogen-associated molecular patterns (PAMPs), and carbon dioxide. Herein, we demonstrated that the amino acid glutamate (Glu), a well-known mammalian neurotransmitter, functions as a novel signaling molecule in stomatal closure in both Arabidopsis and fava bean (Vicia faba L.). Pharmacological and electrophysiological analyses provided important clues for the participation of Glu-receptors, Ca2+, and protein phosphorylation during the signaling process. Genetic analyses using Arabidopsis ABA-deficient (aba2-1) and ABA-insensitive (abi1-1 and abi2-1) mutants showed that ABA is not required for Glu signaling. However, loss-of-function of the Arabidopsis gene encoding Slow Anion Channel-Associated 1 (SLAC1) and Calcium-Dependent Protein Kinase 6 (CPK6) impaired the Glu response. Moreover, T-DNA knockout mutations of the Arabidopsis Glu receptor-like gene (GLR), GLR3.5, lost their sensitivity to Glu-dependent stomatal closure. Our results strongly support functional Glu-signaling in stomatal closure and the crucial roles of GLRs in this signaling process.
- Published
- 2015
40. Rapid response of leaf photosynthesis in two fern species Pteridium aquilinum and Thelypteris dentata to changes in CO2 measured by tunable diode laser absorption spectroscopy
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Keisuke Nishida, Yuko T. Hanba, Naomi Kodama, and Seiichiro Yonemura
- Subjects
Stomatal conductance ,Tunable diode laser absorption spectroscopy ,biology ,CO2 response ,Thelypteris ,Plant physiology ,Plant Science ,Carbon Dioxide ,biology.organism_classification ,Photosynthesis ,Plant Leaves ,Pteridophytes ,chemistry.chemical_compound ,chemistry ,Botany ,Carbon dioxide ,Regular Paper ,Ferns ,Mesophyll conductance ,Pteridium aquilinum ,Fern ,Pteridium - Abstract
We investigated stomatal conductance (g(s)) and mesophyll conductance (g(m)) in response to atmospheric CO2 concentration [CO2] in two primitive land plants, the fern species Pteridium aquilinum and Thelypteris dentata, using the concurrent measurement of leaf gas exchange and carbon isotope discrimination. [CO2] was initially decreased from 400 to 200 μmol mol(-1), and then increased from 200 to 700 μmol mol(-1), and finally decreased from 700 to 400 μmol mol(-1). Analysis by tunable diode laser absorption spectroscopy (TDLAS) revealed a rapid and continuous response in g m within a few minutes. In most cases, both ferns showed rapid and significant responses of g m to changes in [CO2]. The largest changes (quote % decrease) were obtained when [CO2] was decreased from 400 to 200 μmol mol(-1). This is in contrast to angiosperms where an increase in g(m) is commonly observed at low [CO2]. Similarly, fern species observed little or no response of g(s) to changes in [CO2] whereas, a concomitant decline of g(m) and g(s) with [CO2] is often reported in angiosperms. Together, these results suggest that regulation of g(m) to [CO2] may differ between angiosperms and ferns.
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- 2015
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41. New Year's greetings 2024 from the Journal of Plant Research.
- Author
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Katsuhara, Maki
- Subjects
NEW Year ,SALUTATIONS - Abstract
The Journal of Plant Research published 65 articles last year, including a new category called "Milestones in Plant Research" that focuses on historical achievements in plant science. They also published a review paper on self-incompatibility in flower crops and a virtual issue on phylogeographic studies in the Japanese Archipelago. Due to COVID-19, they were unable to hold a symposium in 2021, but they are preparing symposium articles for 2024. The journal is dedicated to disseminating fundamental knowledge in basic plant sciences and welcomes submissions that contribute to this field. They have welcomed new editors and thanked those who have rotated off the editorial board. The journal wishes readers a Happy New Year and encourages the submission of excellent articles in 2024. [Extracted from the article]
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- 2024
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42. Floral morphology and structure of Emblingia calceoliflora (Emblingiaceae, Brassicales): questions and answers
- Author
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Hiroshi Tobe
- Subjects
Gynoecium ,biology ,Emblingiaceae ,Floral morphology ,Stamen ,Brassicales ,Flowers ,Plant Science ,Anatomy ,Floral anatomy ,Emblingia ,biology.organism_classification ,Biological Evolution ,Sepal ,Magnoliopsida ,Pedicel ,Botany ,Regular Paper ,Nectar ,Petal ,Pollination - Abstract
Emblingia calceoliflora, the sole species of the family Emblingiaceae (Brassicales), is a creeping shrub endemic to South Western Australia. The flowers have a characteristic slipper-like corolla (calceolus). Earlier studies using dry specimens have left some questions regarding the flower unresolved. Here I present an anatomical study of fresh flowers to resolve these questions. The flowers are pedicellate, strongly monosymmetric, and pentamerous with the median sepal in the abaxial position. During flower development, a pedicel turns clockwise or anticlockwise, placing the adaxial calceolus (comprising both petals) downward and a transversely dilated androgynophore upward with a large tunnel-like space between them. Two short longitudinal walls develop from the basal part of the petals, enclosing a nectary gland deep in the flower. The vascular anatomy of the androgynophore shows that lateral dédoublement occurs in five stamens, resulting in two pairs of fertile stamens on the adaxial side and (three to) six staminodes as the “hood” on the opposite side. Androecial configuration is obhaplostemony, and the gynoecium is tricarpellate/trilocular. Comparisons with flowers of other Brassicales show that an extrastaminal nectary is a synapomorphy of the core Brassicales including Emblingiaceae. The flower of Emblingia is highly specialized for adaptation to insect-pollination.
- Published
- 2015
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43. A global comparison of the nutritive values of forage plants grown in contrasting environments
- Author
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Mark A. Lee
- Subjects
0106 biological sciences ,Livestock ,Climate ,Forage ,Plant Science ,Biology ,Environment ,Poaceae ,01 natural sciences ,Fibre ,Temperate climate ,Regular Paper ,Animals ,Herbivory ,Grasses ,Plant Proteins ,Biomass (ecology) ,Herbivore ,Geography ,Protein ,fungi ,Plant physiology ,food and beverages ,04 agricultural and veterinary sciences ,Herbaceous plant ,Legumes ,Arid ,Animal Feed ,Tundra ,Plant ecology ,Productivity (ecology) ,Agronomy ,Digestibility ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Nutritive Value ,010606 plant biology & botany ,Herbivores - Abstract
Forage plants are valuable because they maintain wild and domesticated herbivores, and sustain the delivery of meat, milk and other commodities. Forage plants contain different quantities of fibre, lignin, minerals and protein, and vary in the proportion of their tissue that can be digested by herbivores. These nutritive components are important determinants of consumer growth rates, reproductive success and behaviour. A dataset was compiled to quantify variation in forage plant nutritive values within- and between-plant species, and to assess variation between plant functional groups and bioclimatic zones. 1255 geo-located records containing 3774 measurements of nutritive values for 136 forage plant species grown in 30 countries were obtained from published articles. Spatial variability in forage nutritive values indicated that climate modified plant nutritive values. Forage plants grown in arid and equatorial regions generally contained less digestible material than those grown in temperate and tundra regions; containing more fibre and lignin, and less protein. These patterns may reveal why herbivore body sizes, digestion and migration strategies are different in warmer and drier regions. This dataset also revealed the capacity for variation in the nutrition provided by forage plants, which may drive consumer species coexistence. The proportion of the plant tissue that was digestible ranged between species from 2 to 91%. The amount of fibre contained within plant material ranged by 23–90%, protein by 2–36%, lignin by 1–21% and minerals by 2–22%. On average, grasses and tree foliage contained the most fibre, whilst herbaceous legumes contained the most protein and tree foliage contained the most lignin. However, there were individual species within each functional group that were highly nutritious. This dataset may be used to identify forage plant species or mixtures of species from different functional groups with useful nutritional traits which can be cultivated to enhance livestock productivity and inform wild herbivore conservation strategies. Electronic supplementary material The online version of this article (10.1007/s10265-018-1024-y) contains supplementary material, which is available to authorized users.
- Published
- 2017
44. Mg-chelatase I subunit 1 and Mg-protoporphyrin IX methyltransferase affect the stomatal aperture in Arabidopsis thaliana
- Author
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Nobuyoshi Mochizuki, Shin-ichiro Inoue, Toshinori Kinoshita, Sayuri Morimoto, Masakazu Tomiyama, Koji Takahashi, Takaya Ohishi, Midori Soda, Yukiko Okigaki, and Tomo Tsuzuki
- Subjects
Chlorophyll ,Arabidopsis thaliana ,Protein subunit ,Mutant ,Arabidopsis ,Plant Science ,Biology ,Real-Time Polymerase Chain Reaction ,chemistry.chemical_compound ,Gene expression ,Regular Paper ,Gene ,Abscisic acid ,Adenosine Triphosphatases ,Gene knockdown ,Arabidopsis Proteins ,fungi ,Methyltransferases ,Cell biology ,chemistry ,Biochemistry ,ABA ,Stomatal guard cells ,Thermography ,Mutation ,Plant Stomata ,Infrared thermography ,Mg-protoporphyrin IX methyltransferase ,Mg-chelatase I subunit 1 ,Genetic screen ,Abscisic Acid ,Signal Transduction - Abstract
To elucidate the molecular mechanisms of stomatal opening and closure, we performed a genetic screen using infrared thermography to isolate stomatal aperture mutants. We identified a mutant designatedlow temperature with open-stomata 1(lost1), which exhibited reduced leaf temperature, wider stomatal aperture, and a pale green phenotype. Map-based analysis of theLOST1locus revealed that thelost1mutant resulted from a missense mutation in theMg-chelatase I subunit 1(CHLI1) gene, which encodes a subunit of the Mg-chelatase complex involved in chlorophyll synthesis. Transformation of the wild-typeCHLI1gene intolost1complemented alllost1phenotypes. Stomata inlost1exhibited a partial ABA-insensitive phenotype similar to that ofrtl1, aMg-chelatase H subunitmissense mutant. TheMg-protoporphyrin IX methyltransferase(CHLM) gene encodes a subsequent enzyme in the chlorophyll synthesis pathway. We examined stomatal movement in aCHLMknockdown mutant,chlm, and found that it also exhibited an ABA-insensitive phenotype. However,lost1andchlmseedlings all showed normal expression of ABA-induced genes, such asRAB18andRD29B, in response to ABA. These results suggest that the chlorophyll synthesis enzymes, Mg-chelatase complex and CHLM, specifically affect ABA signaling in the control of stomatal aperture and have no effect on ABA-induced gene expression.
- Published
- 2014
45. Announcement of JPR Awards 2006.
- Author
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Nishitani, Kazuhiko
- Subjects
AWARDS ,PERIODICALS ,RESEARCH ,PLANTS - Abstract
The article presents information on the Journal of Plant Research Awards 2006. The Best Paper Award was given to Madoka Ayano, Ryoko Imaichi and Masahiro Kato for their paper, Developmental Morphology of the Asian One-leaf Plant, Monophyllaea glabra (Gesneriaceae) with emphasis on inflorescence morphology. Another Best Paper Award was given to Toshimitsu Ikushima and Teruo Shimmen for their paper entitled Mechano-sensitive Orientation of Cortical Microtubules During Gravitropism in Azuki Bean Epicotyls.
- Published
- 2006
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46. Contribution of thrips to seed production in Habenaria radiata, an orchid morphologically adapted to hawkmoths.
- Author
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Shigeta, Koji and Suetsugu, Kenji
- Subjects
ORCHIDS ,CNIDARIA ,SEED industry ,POLLEN ,FRUIT seeds ,THRIPS - Abstract
The very high floral diversity of Orchidaceae has often been attributed to the intricate relationships between orchids and their pollinators. In particular, the interaction between long-spurred orchids and hawkmoths has been well-studied. However, several recent studies suggest that pollination is driven by complex factors, including floral syndromes and local pollinator availability. Here, we investigated contributions of thrips to seed production in the presumably hawkmoth-pollinated long-spurred orchid Habenaria radiata, using pollination experiments and floral visitor observations. These experiments and observations showed that H. radiata is pollinated by both hawkmoths and thrips. Thrips intrude into the pollen sac, causing several massulae to be shed onto the stigma of the same flower, which is located just below the pollen sac. The fruit set and seed set of flowers enclosed in mesh bags (which allow thrips in) and in flowers enclosed together with thrips in paper bags, were much higher than in flowers enclosed in paper bags without thrips. This suggests that thrips partially contribute to fruit and seed production in this species. It provides evidence that thrips can contribute to seed production in a long-spurred orchid that is morphologically adapted to lepidopteran visitors. Unlike the compact pollinia of typical orchid species, those of H. radiata are mealy and friable, and thrips can therefore dislodge the pollen grains in small clumps. We suggest that secondary pollination by thrips may be more common than previously recognized in orchids with granular pollinia. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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47. Responses of Populus trichocarpa galactinol synthase genes to abiotic stresses
- Author
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Xiang Yu, Juan Yu, Miyako Kusano, Misato Ohtani, Yang Yang, Kazuki Saito, Like Wang, Taku Demura, Qiang Zhuge, and Jie Zhou
- Subjects
Populus trichocarpa ,Molecular Sequence Data ,Oligosaccharides ,Plant Science ,PtrGolS ,Sodium Chloride ,Biology ,Disaccharides ,chemistry.chemical_compound ,Raffinose ,Plant Growth Regulators ,Gene Expression Regulation, Plant ,Stress, Physiological ,RFO ,Gene expression ,Regular Paper ,Amino Acid Sequence ,Promoter Regions, Genetic ,Gene ,Phylogeny ,Plant Proteins ,Genetics ,Abiotic component ,Regulation of gene expression ,Base Sequence ,Abiotic stress ,Plant physiology ,Sequence Analysis, DNA ,Galactosyltransferases ,Plants, Genetically Modified ,biology.organism_classification ,Droughts ,Plant Leaves ,Populus ,Biochemistry ,chemistry ,Organ Specificity ,Galactinol synthase ,Sequence Alignment - Abstract
Galactinol synthase (GolS; EC 2.4.1.123) is a member of the glycosyltransferase eight family that catalyzes the first step in the biosynthesis pathway of the raffinose family of oligosaccharides (RFOs). The accumulation of RFOs in response to abiotic stress indicates a role for RFOs in stress adaptation. To obtain information on the roles of RFOs in abiotic stress adaptation in trees, we investigated the expression patterns of nine Populus trichocarpaGolS (PtrGolS) genes with special reference to stress responses. PtrGolS genes were differentially expressed in different organs, and the expressions of PtrGolS4 and PtrGolS6 were relatively high in all tested organs. The expression levels of all PtrGolS genes, except PtrGolS9, changed in response to abiotic stress in gene- and stress-type-specific manners. Moreover, short- and long-term stress treatments revealed that induction of PtrGolS by salt stress is obvious only in the early period of treatment (within 24 h), whereas water-deficit stress treatments continued to upregulate PtrGolS gene expression after two days of treatment, in addition to induction within 24 h of treatment. Consistent with these expression patterns, the galactinol content in leaves increased after four days of drought stress, but not under salt stress. Our findings suggest divergent roles for PtrGolS genes in abiotic stress responses in poplars. Electronic supplementary material The online version of this article (doi:10.1007/s10265-013-0597-8) contains supplementary material, which is available to authorized users.
- Published
- 2013
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48. Polyamines induce adaptive responses in water deficit stressed cucumber roots
- Author
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Jan Kubiś, Magdalena Arasimowicz-Jelonek, and Jolanta Floryszak-Wieczorek
- Subjects
Membrane permeability ,Proline ,Lipoxygenase ,Membrane damage ,Plant Science ,Biology ,Plant Roots ,Lipid peroxidation ,chemistry.chemical_compound ,Stress, Physiological ,Regular Paper ,Polyamines ,Water deficit ,Plant Proteins ,Lipid peroxide ,Cucumber ,Dehydration ,Cell Membrane ,Plant physiology ,Water ,biology.organism_classification ,Horticulture ,Biochemistry ,chemistry ,Osmolyte ,Seedlings ,biology.protein ,Lipid Peroxidation ,Cucumis sativus ,Cucumis - Abstract
The aim of this study was to investigate the effect of exogenous polyamines (PAs) on the membrane status and proline level in roots of water stressed cucumber (Cucumis sativus cv. Dar) seedlings. It was found that water shortage resulted in an increase of membrane injury, lipoxygenase (LOX) activity, lipid peroxidation and proline concentration in cucumber roots during progressive dehydration. PA pretreatment resulted in a distinct reduction of the injury index, and this effect was reflected by a lower stress-evoked LOX activity increase and lipid peroxide levels at the end of the stress period. In contrast, PA-supplied stressed roots displayed a higher proline accumulation. The presented results suggest that exogenous PAs are able to alleviate water deficit-induced membrane permeability and diminish LOX activity. Observed changes were accompanied by an accumulation of proline, suggesting that the accumulation of this osmolyte might be another possible mode of action for PAs to attain higher membrane stability, and in this way mitigate water deficit effects in roots of cucumber seedlings.
- Published
- 2013
49. The photosynthetic response of tobacco plants overexpressing ice plant aquaporin McMIPB to a soil water deficit and high vapor pressure deficit
- Author
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Maki Katsuhara, Yuko T. Hanba, and Miki Kawase
- Subjects
Stomatal conductance ,Vapor Pressure ,Vapour Pressure Deficit ,Ribulose-Bisphosphate Carboxylase ,Plant Science ,Biology ,Aquaporins ,Photosynthesis ,Antibodies ,Soil ,Tobacco ,Regular Paper ,Atmospheric humidity ,Plant Proteins ,Transpiration ,Mesembryanthemum ,fungi ,Mesembryanthemum crystallinum ,Water ,food and beverages ,Plant physiology ,Biological Transport ,Plant Transpiration ,Carbon Dioxide ,Plants, Genetically Modified ,biology.organism_classification ,Photosynthetic capacity ,CO2 transporter ,Plant Leaves ,Agronomy ,Plant Stomata ,Mesophyll conductance ,Mesophyll anatomy ,Mesophyll Cells - Abstract
We investigated the photosynthetic capacity and plant growth of tobacco plants overexpressing ice plant (Mesembryanthemum crystallinum L.) aquaporin McMIPB under (1) a well-watered growth condition, (2) a well-watered and temporal higher vapor pressure deficit (VPD) condition, and (3) a soil water deficit growth condition to investigate the effect of McMIPB on photosynthetic responses under moderate soil and atmospheric humidity and water deficit conditions. Transgenic plants showed a significantly higher photosynthesis rate (by 48 %), higher mesophyll conductance (by 52 %), and enhanced growth under the well-watered growth condition than those of control plants. Decreases in the photosynthesis rate and stomatal conductance from ambient to higher VPD were slightly higher in transgenic plants than those in control plants. When plants were grown under the soil water deficit condition, decreases in the photosynthesis rate and stomatal conductance were less significant in transgenic plants than those in control plants. McMIPB is likely to work as a CO2 transporter, as well as control the regulation of stomata to water deficits.
- Published
- 2013
- Full Text
- View/download PDF
50. Anagenetic speciation in Ullung Island, Korea: genetic diversity and structure in the island endemic species, Acer takesimense (Sapindaceae)
- Author
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Koji Takayama, Tod F. Stuessy, and Byung-Yun Sun
- Subjects
0106 biological sciences ,Anagenetic speciation ,Endemic plants ,Genetic Speciation ,Korean Peninsula ,Allopatric speciation ,Acer ,Plant Science ,Biology ,Polymerase Chain Reaction ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,Adaptive radiation ,Republic of Korea ,Genetic algorithm ,Regular Paper ,Oceanic island ,Phylogeny ,030304 developmental biology ,Islands ,0303 health sciences ,Genetic diversity ,Ecology ,Genetic Variation ,Bayes Theorem ,15. Life on land ,Anagenesis ,Phylogeography ,Cladogenesis ,Genetic structure ,Phyletic speciation ,Microsatellite Repeats - Abstract
Anagenetic speciation is an important mode of speciation in oceanic islands; one-fourth of the endemic plants are estimated to have been derived via this process. Few studies, however, have critically examined the genetic consequences of anagenesis in comparison with cladogenesis (involved with adaptive radiation). We hypothesize that endemic species originating via anagenetic speciation in a relatively uniform environment should accumulate genetic variation with limited populational differentiation. We undertook a population genetic analysis using nine nuclear microsatellite loci of Acer takesimense, an anagenetically derived species endemic to Ullung Island, Korea, and its continental progenitor A. pseudosieboldianum on the Korean Peninsula. Microsatellite data reveal a clear genetic distinction between the two species. A high F value in the cluster of A. takesimense was found by Bayesian clustering analysis, suggesting a strong episode of genetic drift during colonization and speciation. In comparison with A. pseudosieboldianum, A. takesimense has slightly lower genetic diversity and possesses less than half the number of private and rare alleles. Consistent with predictions, weak geographical genetic structure within the island was found in A. takesimense. These results imply that anagenetic speciation leads to a different pattern of specific and genetic diversity than often seen with cladogenesis.
- Published
- 2012
- Full Text
- View/download PDF
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