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1. The suprachiasmatic nucleus (SCN) of the hypothalamus is the primary pacemaker for circadian rhythms in mammals. The 24 h pacemaker is endogenous to the SCN and persists for multiple cycles in the suprachiasmatic brain slice. 2. While serotonin is not endogenous to the SCN, a major midbrain hypothalamic afferent pathway is serotonergic. Within this tract the dorsal raphe nucleus sends direct projections to the ventrolateral portions of the SCN. We investigated a possible regulatory role for serotonin in the mammalian circadian system by examining its effect, when applied at projection sites, on the circadian rhythm of neuronal activity in rat SCN in vitro. 3. Eight‐week‐old male rats from our inbred colony, housed on a 12 h light: 12 h dark schedule, were used. Hypothalamic brain slices containing the paired SCN were prepared in the day and maintained in glucose and bicarbonate‐supplemented balanced salt solution for up to 53 h. 4. A 10(‐11) ml drop of 10(‐6) M‐serotonin (5‐hydroxytryptamine (5‐HT) creatinine sulphate complex) in medium was applied to the ventrolateral portion of one of the SCN for 5 min on the first day in vitro. The effect of the treatment at each of seven time points across the circadian cycle was examined. The rhythm of spontaneous neuronal activity was recorded extracellularly on the second and third days in vitro. Phase shifts were determined by comparing the time‐of‐peak of neuronal activity in serotonin‐ vs. media‐treated slices. 5. Application of serotonin during the subjective day induced significant advances in the phase of the electrical activity rhythm (n = 11). The most sensitive time of treatment was CT 7 (circadian time 7 is 7 h after ‘lights on’ in the animal colony), when a 7.0 +/‐ 0.1 h phase advance was observed (n = 3). This phase advance was perpetuated on day 3 in vitro without decrement. Serotonin treatment during the subjective night had no effect on the timing of the electrical activity rhythm (n = 9). 6. The specificity of the serotonin‐induced phase change was assessed by treating slices in the same manner with a microdrop of serotonergic agonists, 5‐carboxamidotryptamine, that targets the 5‐HT1 class of receptors, or 8‐hydroxy‐dipropylaminotetralin (8‐OH DPAT), that acts on the 5‐HT1A receptor subtype.(ABSTRACT TRUNCATED AT 400 WORDS)