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A wide variety of organic dyes form, under certain conditions, clusters know as J- and H-aggregates. Cyanine dyes are such a class of molecules where the spatial proximity of several dyes leads to overlapping electron orbitals and thus to the creation of a new energy landscape compared to that of the individual units. In this work, we create artificial H-aggregates of exactly two Cyanine 3 (Cy3) dyes by covalently linking them to a DNA molecule with controlled subnanometer distances. The absorption spectra of these coupled systems exhibit a blue-shifted peak, whose intensity varies depending on the distance between the dyes and the rigidity of the DNA template. Simulated vibrational resolved spectra, based on molecular orbital theory, excellently reproduce the experimentally observed features. Circular dichroism spectroscopy additionally reveals distinct signals, which indicates a chiral arrangement of the dye molecules. Molecular dynamic simulations of a Cy3-Cy3 construct including a 14-base pair DNA sequence verified chiral stacking of the dye molecules. [ABSTRACT FROM AUTHOR]

Low rylene (R) and rylene diimides (RD) are important organic semiconductors and dyes. High R and RD with larger conjugated cores show different properties compared with their low counterparts. Herein, absorption spectra, frontier molecular orbitals, band gaps, inner-sphere reorganization energy (λi), ionization potential, electron affinity, and atomic charge population of 20 rylene compounds were calculated by the density functional theory method. The theoretical results agree well with experimental ones. We predict some unusual properties of some high rylene derivatives that are unknown compounds due to synthetic difficulties. The lowest unoccupied molecular orbital energy levels of RD compounds change slightly, from −3.61 to −3.79 eV, which makes them strong electron acceptors. The band gaps narrow with the size increase of conjugated cores, which makes high rylene derivatives near-infrared dyes. The rising highest occupied molecular orbital energy levels of high rylene derivatives makes them unstable in the air. The λi falls with the size increase of the conjugated core, and the size of RD-4 or R-4 is big enough for the small λi to favor charge transport. The charge population analysis indicates R and RD have different charge distribution under the effect of electron-withdrawing imide groups, which contributes to distinct properties. [ABSTRACT FROM AUTHOR]

This article describes the new multidimensional spectroscopy technique triply resonant sum frequency spectroscopy, a four-wave mixing technique sharing advantages of both 2D-IR and resonance Raman experiments. In this technique, lasers with three independent frequencies interact coherently within a sample and generate an output frequency at their triple summation. The output intensity depends on coupled electronic and vibrational resonances in the sample. We use an organic dye as a model system to demonstrate fully resonant, fully coherent multidimensional spectroscopy using two independently tunable mid-infrared vibrational interactions and one visible electronic interaction. When the pulses are time ordered, the method has a single coherence pathway, eliminating interference between pathways. Fundamental vibrational transitions appear on one axis and overtones and combinations bands on the other, allowing anharmonicities of the modes to be determined easily and conveying molecular coupling information. The experiments demonstrate coupling between seven vibrational ring modes and an electronic state, the resolution of a Fermi resonance, detection of low concentrations, elimination of excitation pulse scattering and fluorescence, background suppression of solvent and co-solutes, and observation of coherence dephasing dynamics. The electronic resonance enhancements used in this methodology are similar to the enhancements responsible for resonance Raman spectroscopy and can be considered resonance 2D-IR spectroscopy. [ABSTRACT FROM AUTHOR]

The 1H NMR chemical shifts were theoretically computed for the organic dyes 2-(2,6-dimethyl-4H-pyran-4-ylidene)-malononitrile (1), cyano-(2,6-dimethyl-4H-pyran-4-ylidene)-acetic acid methyl ester (2), 2-(2,6-bis(4-(dimethylamino)styryl)-4H-pyran-4-ylidene)-malononitrile (3), and methyl 2-(2,6-bis(4-(dimethylamino)styryl)-4H-pyran-4-ylidene)-2-cyanoacetate (4) at the GIAO/B3LYP/6-311(d,p)//B3LYP/6-311(d,p) level of theory. Moreover, the intramolecular rotational barriers of the molecules were calculated to evaluate the internal flexibility with respect to the torsional degrees of freedom, and the nuclear-independent chemical shifts (NICS) were employed to analyze the ring currents. The difference was explained in terms of intramolecular hydrogen bonds and ring currents of the molecules. The 1H NMR spectra were reproduced by experiments for the comparison with computationally constructed data. Our results suggest a good guideline in interpreting 1H NMR chemical shifts using computational methods and furthermore a reliable perspective for designing molecular structures. [ABSTRACT FROM AUTHOR]

The quest of organic dyes presenting improved electronic features has been extremely active during the last decades, as new structures are necessary to build novel materials such as dye-sensitized solar cells, nonlinear optics commutators, or molecular photochromic switches. Cyanine derivatives occupy a key spot in that scene, as they present intense absorption bands and tunable colors, even when a relatively short π-conjugated path is used. This behavior has often been interpreted as a consequence of a negligible bond length alternation. Recently, Thorley et al. have designed and characterized new cationic compounds that possess the cyanine electronic features, though presenting sizable bond length alternation (Angew. Chem. Int. Ed.2008, 47, 7095−7098). In this contribution, I investigate, with quantum mechanical tools, the size dependence of these properties in model symmetric dyes displaying Thorley’s patterns. Extended chains are simulated in order to obtain insights into the chain length convergence, and the results are compared to those obtained at the same level of theory for classical cyanine architectures. This theoretical work is a step toward the rational development of more efficient π-conjugated compounds. [ABSTRACT FROM AUTHOR]

A two-dimensional (2D) optical coherent spectroscopy that correlates the double excited electronic states to constituent single excited states is described. The technique, termed two-dimensional double-quantum coherence spectroscopy (2D-DQCS), makes use of multiple, time-ordered ultrashort coherent optical pulses to create double and single quantum coherences over the time intervals between the pulses. The resulting 2D electronic spectra map out the energy correlation between the first excited state and two-photon-allowed double-quantum states. Measurements of organic dye molecules show that the near-resonant energy offset for adding a second electronic excitation to the system relative to the first excitation is on the order of tens of millielectronvolts. Simulations of DQC spectra show that vibronic transitions add rich features to the 2D spectra. The results of quantum chemical calculations on model systems provide insight into the many-body origin of the energy shift measured in the experiment. These results demonstrate the potential of 2D-DQCS for elucidating quantitative information about electron−electron interactions, many-electron wave functions, and electron correlation in electronic excited states and excitons. [ABSTRACT FROM AUTHOR]

A new organic fluorescent dye, 2,4-dichloro-6-[p-(N,N-diethylamino)biphenylyl]-1,3,5-triazine (DBQ), with an electron withdrawing−donating pair bridged by a twistable aromatic chain has been synthesized. DBQ exhibits high fluorescence quantum yields (0.96 in hexane and 0.71 in THF), high extinction coefficients, and an excitation window extending up to ∼480 nm. Due to the strong intramolecular charge transfer character, DBQ shows obviously solvent-dependent Stokes shifts with a value as high as 6360 cm−1in THF and controllable fluorescence emission in the visible region from “blue” to “orange”. The axially chiral structures of DBQ crystals were clearly revealed by the X-ray analyses and CD spectroscopy measurements. Two enantiomers of DBQ were obtained by spontaneous resolution upon crystallization without any chiral auxiliary. The low rotation barriers around the interannular bonds in DBQ molecules resulted in an efficient and selective multiplication of each of the chiral structures when DBQ crystallized in THF at room temperature in the presence of an enantiopure crystal seed, leaving racemized DBQ molecules in the solution. The special crystalline properties of DBQ provided a new approach to the design and synthesis of organic chiral crystals. The photophysical properties of DBQ make it promising in the preparation of new fluorescent probes with high sensitivity. [ABSTRACT FROM AUTHOR]

The catalytic degradation of organic dye (methylene blue, MB) has been studied using green oxidation methods (tertiary-butyl hydrogen peroxide, TBHP, as the oxidant with several doped mixed-valent and regular manganese oxide catalysts in water) at room and higher temperatures. These catalysts belong to a class of porous manganese oxides known as octahedral molecular sieves (OMS). The most active catalysts were those of Mo6+- and V5+-doped OMS. Rates of reaction were found to be first-order with respect to the dye. TBHP has been found to enhance the MB decomposition, whereas H2O2does not. Reactions were studied at pH 3−11. The optimum pH for these reactions was pH 3. Dye-decomposing activity was proportional to the amount of catalyst used, and a significant increase in catalytic activity was observed with increasing temperature. X-ray diffraction (XRD), energy dispersive spectroscopy (EDX), and thermogravimetric analysis (TGA) studies showed that no changes in the catalyst structure occurred after the dye-degradation reaction. The products as analyzed by electrospray ionization mass spectrometry (ESI-MS) showed that MB was successively decomposed through different intermediate species. [ABSTRACT FROM AUTHOR]

A theoretical analysis, based on density functional theory, has been carried out on the electronic properties of eosin yellowish (2′,4′,5′,7′-tetrabromofluorescein), a dye used for photovoltaic applications. In particular different oxidation states of the bare molecule as well as its complexes with a Zn dication have been considered, with the aim to gain some insights on its electro- and photochemical behavior. The calculations have been carried out both in the gas phase and in solution, this last modeled by a continuum model. Besides the agreement with the experimental data, our results allow for a better interpretation of the spectroscopic properties of this dye and their tuning by interaction with the solvent or metal atom in aqueous solution. [ABSTRACT FROM AUTHOR]

Perylene-3,4:9,10-bis(dicarboximide) (PDI) and its derivatives are robust organic dyes that strongly absorb visible light and display a strong tendency to self-assemble into ordered aggregates, having significant interest as photoactive materials in a wide variety of organic electronics. To better understand the nature of the electronics states produced by photoexcitation of such aggregates, the photophysics of a series of covalent, cofacially oriented, -stacked dimers and trimers of PDI and 1,7-bis(3‘,5‘-di-t-butylphenoxy)perylene-3,4:9,10-bis(dicarboximide) (PPDI) were characterized using both time-resolved absorption and fluorescence spectroscopy. The covalent linkage between the chromophores was accomplished using 9,9-dimethylxanthene spacers. Placing n-octyl groups on the imide nitrogen atoms at the end of the PDI chromophores not attached to the xanthene spacer results in PDI dimers having near optimal -stacking, leading to formation of a low-energy excimer-like state, while substituting the more sterically demanding 12-tricosanyl group on the imides causes deviations from the optimum that result in slower formation of an excimer-like excited state having somewhat higher energy. By comparison, PPDI dimers having terminal n-octyl imide groups have two isomers, whose photophysical properties depend on the ability of the phenoxy groups at the 1,7-positions to modify the stacking of the PPDI molecules. In general, disruption of optimal -stacking by steric interactions of the phenoxy side groups results in excimer-like states that are higher in energy. The corresponding lowest excited singlet states of the PDI and PPDI trimers are dimer-like in nature and suggest that structural distortions that accompany formation of the trimers are sufficient to confine the electronic interaction on two chromophores within these systems. This further suggests that it may be useful to build into oligomeric PDI and PPDI systems some degree of flexibility that allows the structural relaxations necessary to promote electronic interactions between multiple chromophores. [ABSTRACT FROM AUTHOR]

The addition of monovalent, divalent, and trivalent metal ions to three anionic ethyl meso-thiacarbocyanine dyes, an ethyl meso-oxacarbocyanine, and an imidacarbocyanine in aqueous solution at room temperature results in the production of J-aggregates within the range of tens to hundreds of seconds. The rate of formation of J-aggregates correlates with the rate of decay of dimers or monomers and is dependent on the type of metal ion, dye structure, and temperature. The rate of formation of J-aggregates increases as the temperature decreases and the dye and salt concentrations increase, and the rate is highest for trivalent ions and smallest for monovalent ions, independent of the type of anion. The time course of formation of J-aggregates is described in most cases by a sigmoidal curve, and the kinetics and mechanism are discussed within the framework of autocatalysis. Computer simulations reveal that the sigmoidal time dependence is transferred to an exponential-like curve by substantially increasing the rate constant for the noncatalytic step. The reaction pathway into J-aggregates can be switched from dimeric ion pairs as the reactant to monomeric ion pairs, when the rate constant for the catalytic step via the monomer becomes larger with respect to that via the dimer. [ABSTRACT FROM AUTHOR]