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To quantify the contribution of endolithic phototrophs to primary production of dead carbonate substrates, experimental blocks of cleaned Porites lobata Dana skeleton were placed at three different sites in Kaneohe Bay, Hawaii: inshore, lagoonal, and oceanic. After 6 months of exposure, experimental blocks were colonized by communities characteristic of their estuarine (inshore, lagoonal) and oceanic (ocean) environments. Blocks were subsampled; net photosynthesis (NP) and chl a concentrations of the whole blocks (epi- and endoliths) and scrapped blocks (only endoliths) were quantified. Green turf algae colonized predominantly inshore and lagoonal blocks, while encrusting corallines were the dominant epiliths colonizing oceanic blocks. Four main species of endolithic phototrophs were identified in all blocks: Mastigocoleus testarum Lagerheim, Plectonema terebrans Bornet and Flahault (cyanobacteria), Phaeophila dendroides Crouan and Crouan, and Ostreobium quekettii Bornet and Flahault (Chlorophytes). While epiliths were very different between sites, NP rates and chl a concentration of endoliths did not vary significantly and were positively correlated (191 ± 25 mmol C·m -2 ·day -1 and 590 ± 150 mg chl a · m 2 of reef, respectively). Assimilation numbers for whole communities, including both epilithic and endolithic communities, were similar to those measured for endolithic communities alone (average of 0.3 g C-g chl a·h -1 ). Under experimental conditions, the contribution of endolithic phototrophs to community NP rates of blocks ranged from 56% to 81%, and under natural conditions, we estimated that this contribution ranged between 32% and 46%. Thus, we showed that the endolithic phototrophs are one of the major primary producers in dead coral substrates in a wide range of coral reef environments.

Natural populations of benthic cyanobacteria in the lagoon of Tikehau Atoll in French Polynesia were studied using a polyphasic approach that combined field observations, LM, culturing, and molecular sequencing. The approach assessed their phenotypic (morphotypic and ecological) and genotypic diversity. Partial sequences (approximately 450 bp long) of the PCR-amplified 16S rRNA gene were obtained from both natural and cultured populations using cyanobacteria-specific primers. The sequences obtained clustered into six separate phylogenetic clusters in relation to the complete set of 16S rRNA sequences available in public databases. Phylogenetic clustering correlated in many cases with some morphological characteristics. For example, Spirulina subsalsa could be identified to the morphospecies level using both molecular and microscopic approaches. Morphotypes identified as Symploca hydnoides (Kutz. ex Gomont) TK22, Phormidium sp. TK1, and P. laysanense (Lemmerman) TK14 formed a distinct cluster. The morphogenus Hydrocoleum (Blennothrix) clustered interestingly close to the morphologically similar, but planktonic, marine cyanobacterium Trichodesmium, suggesting a relationship. Other sequences belonging to morphotaxa with very narrow trichomes were found to be polyphyletic. Enrichment cultures, with inoculum obtained from field populations, were followed over a period of 18 months. Dominance in all cultures shifted over time in favor of a set of cyanobacterial strains with narrow trichomes, which were phenotypically and phylogenetically different from natural populations dominating the original samples. Sequences from strains enriched by cultivation clustered into two well-defined phylogenetic groups, possibly identifying new taxa. These clusters may represent a niche of opportunistic species, evolved to exploit short-term nutrient spikes in the environment.

A new species of endolithic cyanobacteria, Hyella racemus sp. nov. (order Pleurocapsales), penetrates ooid grains in actively shaling sands in shallow (0.5-5 m) waters of the Bahama carbonate platform and the Arabian Gulf. Hyella racemus is characterized by prolific branching, resulting in dense grape-like cell clusters that penetrate the carbonate substrate. The clusters radiate inward and form deep, isodiametric pits. Resin casts of these pits are framboid (raspberry-like) in shape. The borehole morphology conforms with the shape of the endolith body and can be identified in resin-cast preparations. Cell division is by cleavage with regular alternation of division planes

Hyella immanis, a new species of endolithic cyanobacterium that penetrates carbonate ooid sand grains in the Arabian/Persian Gulf, is formally described. Natural populations of the new taxon were sampled in moving ooid shoals at four locations along the east coast of Saudi Arabia, together with seven other endolithic taxa. The new species was isolated, and its properties were studied under experimental conditions. Small reproductive cells (baeocytes) exhibited positively phototactic gliding motility following release. In culture they grew into colonies forming isodiametric packages (prevalent on agar) and distinct pseudofilaments (prevalent in liquid culture). Carbonate penetration of the cultured strain in liquid culture proceeded at a rate of up to 10 μ· d−1. Agitation of cultures with magnetic stirrers enhanced the frequency of borings and the initial boring rates, but it had no effect on the continuing boring activity. A fossil counterpart of the new species was identified in Upper Proterozoic (700–800 million years old) silicified oolitic and pisolitic rocks of East Greenland.

This paper describes a new genus and species of endolithic microorganism, Cyanosaccus piriformis Lukas and Golubic (Cyanophyta, Pleurocapsales). It is characterized by 1) having one to four spherical to pear-shaped cells within a stalked, gelatinous sheath, 2) its mode of reproduction by release of a large number of baeocytes produced by the proximal daughter cell following transverse binary fission of the parent cell, and 3) its ability to bore into and dwell within carbonate substrates in the marine environment. Its habit of asymmetrical sheath production allies it with the common microboring genera Hyella and Solentia within the family Hyellaceae. Cyanosaccus is a common inhabitant of mollusk shells found in water depths ranging from +0.5 to –75 m MLW on the eastern Florida continental margin and in carbonate sands or rocks in the intertidal and subtidal zones of the Bermuda and Bahama Islands. Its distribution within and among inhabited substrates is patchy due to its mode of reproduction and growth.

A new species of endolithic cyanophyte, Hyella gigas Lukas and Golubic (Order: Pleurocapsales), differs from other species of Hyella by its larger cell and filament dimensions and its laminated, often pigmented sheath. It bores into mollusk shells and other marine carbonate substrates on the east coast of North America, the Bahama Islands and the Northern Mediterranean Sea, where it is found from near mean low water down to 25 m depth. This comparatively shallow maximum depth is probably due to the limited capacity of Hyella gigas to adapt to changing light quality and intensity. We reject the suppression of the genus Hyella as proposed by Drouet and Daily.