1. Genetic analysis of the capsid region of norovirus GII.4 variants isolated in South Korea
- Author
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Lae-Hyung Kang, Soon-Young Paik, Sung-Geun Lee, Han-Gil Cho, J.W. Kim, Youn-Mi Lee, Chul Jong Park, and Sang-Ha Han
- Subjects
Genotype ,Sequence analysis ,viruses ,Biology ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Microbiology ,Genetic analysis ,fluids and secretions ,Genetic variation ,Republic of Korea ,medicine ,Cluster Analysis ,Humans ,Amino Acid Sequence ,Peptide sequence ,Phylogeny ,Caliciviridae Infections ,Genetics ,Molecular Epidemiology ,Molecular epidemiology ,Sequence Homology, Amino Acid ,Norovirus ,virus diseases ,Genetic Variation ,General Medicine ,Sequence Analysis, DNA ,Virology ,Gastroenteritis ,Open reading frame ,RNA, Viral ,Capsid Proteins - Abstract
Norovirus is one of the major causes of non-bacterial gastroenteritis in humans. The aim of this study was to analyze the amino acid variation of open reading frame 2 of GII.4 variants in South Korea during the period from November 2006 to December 2012. Sixty-nine complete nucleotide sequences of open reading frame 2 were obtained from 113 GII.4 strains. The GII.4 2006b variants were detected predominantly between 2006 and 2009; however, new GII.4 variants, which were termed the 2010 variant and the 2012 variant, emerged in 2010 and 2012, respectively. The number of GII.4 2006b variants steadily decreased until 2012, whereas the number of gastroenteritis cases caused by the new variants increased between 2010 and 2012. The amino acid sequence in the ORF2 region obtained in this study was compared with other GII.4 variants isolated in various countries. Amino acid variations were observed primarily at epitope sites and the surrounding regions. Amino acids 294, 359, 393, and 413 of the P2 subdomain were the most variable sites among the GII.4 variants. The information in this study can be useful in basic research to predict the emergence and determine the genetic functions of new GII.4 variants.
- Published
- 2013