1. High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach.
- Author
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Mollerup, Sarah, Asplund, Maria, Friis-Nielsen, Jens, Kjartansdóttir, Kristín Rós, Fridholm, Helena, Hansen, Thomas Arn, Herrera, José Alejandro Romero, Barnes, Christopher James, Jensen, Randi Holm, Richter, Stine Raith, Nielsen, Ida Broman, Pietroni, Carlotta, Alquezar-Planas, David E, Rey-Iglesia, Alba, Olsen, Pernille V S, Meyts, Ewa Rajpert-De, Groth-Pedersen, Line, Buchwald, Christian von, Jensen, David H, and Gniadecki, Robert
- Subjects
ONCOGENIC viruses ,HERPESVIRUSES ,VIRAL shedding ,VIRUSES ,CANCER - Abstract
Background: Viruses and other infectious agents cause more than 15% of human cancer cases. High-throughput sequencing-based studies of virus-cancer associations have mainly focused on cancer transcriptome data.Methods: In this study, we applied a diverse selection of presequencing enrichment methods targeting all major viral groups, to characterize the viruses present in 197 samples from 18 sample types of cancerous origin. Using high-throughput sequencing, we generated 710 datasets constituting 57 billion sequencing reads.Results: Detailed in silico investigation of the viral content, including exclusion of viral artefacts, from de novo assembled contigs and individual sequencing reads yielded a map of the viruses detected. Our data reveal a virome dominated by papillomaviruses, anelloviruses, herpesviruses, and parvoviruses. More than half of the included samples contained 1 or more viruses; however, no link between specific viruses and cancer types were found.Conclusions: Our study sheds light on viral presence in cancers and provides highly relevant virome data for future reference. [ABSTRACT FROM AUTHOR]- Published
- 2019
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