1. A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition
- Author
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Natalie A. Borg, Dale I. Godfrey, James McCluskey, Mandvi Bharadwaj, Nicholas A. Williamson, Lyudmila Kostenko, Gurdyal S. Besra, Lars Kjer-Nielsen, Jamie Rossjohn, Travis Clarke Beddoe, Daniel G. Pellicci, Mark J. Smyth, Hugh H. Reid, and Craig Steven Clements
- Subjects
Receptors, Antigen, T-Cell, alpha-beta ,T-Lymphocytes ,T cell ,Immunology ,Antigen presentation ,CD1 ,chemical and pharmacologic phenomena ,Biology ,Article ,Antigens, CD1 ,Mice ,Structure-Activity Relationship ,03 medical and health sciences ,0302 clinical medicine ,Glycolipid ,Species Specificity ,Antigen ,medicine ,Animals ,Humans ,Immunology and Allergy ,Protein Structure, Quaternary ,030304 developmental biology ,Antigen Presentation ,0303 health sciences ,T-cell receptor ,hemic and immune systems ,Articles ,Natural killer T cell ,Protein Structure, Tertiary ,Cell biology ,Killer Cells, Natural ,carbohydrates (lipids) ,medicine.anatomical_structure ,Biochemistry ,Structural Homology, Protein ,CD1D ,Genes, T-Cell Receptor beta ,biology.protein ,lipids (amino acids, peptides, and proteins) ,Glycolipids ,Genes, T-Cell Receptor alpha ,Protein Binding ,030215 immunology - Abstract
Little is known regarding the basis for selection of the semi-invariant alphabeta T cell receptor (TCR) expressed by natural killer T (NKT) cells or how this mediates recognition of CD1d-glycolipid complexes. We have determined the structures of two human NKT TCRs that differ in their CDR3beta composition and length. Both TCRs contain a conserved, positively charged pocket at the ligand interface that is lined by residues from the invariant TCR alpha- and semi-invariant beta-chains. The cavity is centrally located and ideally suited to interact with the exposed glycosyl head group of glycolipid antigens. Sequences common to mouse and human invariant NKT TCRs reveal a contiguous conserved "hot spot" that provides a basis for the reactivity of NKT cells across species. Structural and functional data suggest that the CDR3beta loop provides a plasticity mechanism that accommodates recognition of a variety of glycolipid antigens presented by CD1d. We propose a model of NKT TCR-CD1d-glycolipid interaction in which the invariant CDR3alpha loop is predicted to play a major role in determining the inherent bias toward CD1d. The findings define a structural basis for the selection of the semi-invariant alphabeta TCR and the unique antigen specificity of NKT cells.
- Published
- 2006