Search

C4 photosynthesis is a complex specialization that enhances carbon gain in hot, often arid habitats where photorespiration rates can be high. Certain features unique to C4 photosynthesis may reduce the potential for phenotypic plasticity and photosynthetic acclimation to environmental change relative to what is possible with C3 photosynthesis. During acclimation, the structural and physiological integrity of the mesophyll–bundle sheath (M-BS) complex has to be maintained if C4 photosynthesis is to function efficiently in the new environment. Disruption of the M-BS structure could interfere with metabolic co-ordination between the C3 and C4 cycles, decrease metabolite flow rate between the tissues, increase CO2 leakage from the bundle sheath, and slow enzyme activity. C4 plants have substantial acclimation potential, but in most cases lag behind the acclimation responses in C3 plants. For example, some C4 species are unable to maintain high quantum yields when grown in low-light conditions. Others fail to reduce carboxylase content in shade, leaving substantial over-capacity of Rubisco and PEP carboxylase in place. Shade-tolerant C4 grasses lack the capacity for maintaining a high state of photosynthetic induction following sunflecks, and thus may be poorly suited to exploit subsequent sunflecks compared with C3 species. In total, the evidence indicates that C4 photosynthesis is less phenotypically plastic than C3 photosynthesis, and this may contribute to the more restricted ecological and geographical distribution of C4 plants across the Earth. [ABSTRACT FROM PUBLISHER]

Photoprotective non-photochemical quenching (NPQ) represents an effective way to dissipate the light energy absorbed in excess by most phototrophs. It is often claimed that NPQ formation/relaxation kinetics are determined by xanthophyll composition. We, however, found that, for the alveolate alga Chromera velia, this is not the case. In the present paper, we investigated the reasons for the constitutive high rate of quenching displayed by the alga by comparing its light harvesting strategies with those of a model phototroph, the land plant Spinacia oleracea. Experimental results and in silico studies support the idea that fast quenching is due not to xanthophylls, but to intrinsic properties of the Chromera light harvesting complex (CLH) protein, related to amino acid composition and protein folding. The p K a for CLH quenching was shifted by 0.5 units to a higher pH compared with higher plant antennas (light harvesting complex II; LHCII). We conclude that, whilst higher plant LHCIIs are better suited for light harvesting, CLHs are ‘natural quenchers’ ready to switch into a dissipative state. We propose that organisms with antenna proteins intrinsically more sensitive to protons, such as C. velia, carry a relatively high concentration of violaxanthin to improve their light harvesting. In contrast, higher plants need less violaxanthin per chlorophyll because LHCII proteins are more efficient light harvesters and instead require co-factors such as zeaxanthin and PsbS to accelerate and enhance quenching. [ABSTRACT FROM AUTHOR]

Food security is a pressing global issue. New approaches are required to break through a yield ceiling that has developed in recent years for the major crops. As important as increasing yield potential is the protection of yield from abiotic stresses in an increasingly variable and unpredictable climate. Current strategies to improve yield include conventional breeding, marker-assisted breeding, quantitative trait loci (QTLs), mutagenesis, creation of hybrids, genetic modification (GM), emerging genome-editing technologies, and chemical approaches. A regulatory mechanism amenable to three of these approaches has great promise for large yield improvements. Trehalose 6-phosphate (T6P) synthesized in the low-flux trehalose biosynthetic pathway signals the availability of sucrose in plant cells as part of a whole-plant sucrose homeostatic mechanism. Modifying T6P content by GM, marker-assisted selection, and novel chemistry has improved yield in three major cereals under a range of water availabilities from severe drought through to flooding. Yield improvements have been achieved by altering carbon allocation and how carbon is used. Targeting T6P both temporally and spatially offers great promise for large yield improvements in productive (up to 20%) and marginal environments (up to 120%). This opinion paper highlights this important breakthrough in fundamental science for crop improvement. [ABSTRACT FROM AUTHOR]

The year 2016 marks 50 years since the publication of the seminal paper by Hatch and Slack describing the biochemical pathway we now know as C4 photosynthesis. This review provides insight into the initial discovery of this pathway, the clues which led Hatch and Slack and others to these definitive experiments, some of the intrigue which surrounds the international activities which led up to the discovery, and personal insights into the future of this research field. While the biochemical understanding of the basic pathways came quickly, the role of the bundle sheath intermediate CO2 pool was not understood for a number of years, and the nature of C4 as a biochemical CO2 pump then linked the unique Kranz anatomy of C4 plants to their biochemical specialization. Decades of "grind and find biochemistry" and leaf physiology fleshed out the regulation of the pathway and the differences in physiological response to the environment between C3 and C4 plants. The more recent advent of plant transformation then high-throughput RNA and DNA sequencing and synthetic biology has allowed us both to carry out biochemical experiments and test hypotheses in planta and to better understand the evolution-driven molecular and genetic changes which occurred in the genomes of plants in the transition from C3 to C4. Now we are using this knowledge in attempts to engineer C4 rice and improve the C4 engine itself for enhanced food security and to provide novel biofuel feedstocks. The next 50 years of photosynthesis will no doubt be challenging, stimulating, and a drawcard for the best young minds in plant biology. [ABSTRACT FROM AUTHOR]

To feed a world population projected to reach 9 billion people by 2050, the productivity of major crops must be increased by at least 50%. One potential route to boost the productivity of cereals is to equip them genetically with the 'supercharged' C4 type of photosynthesis; however, the necessary genetic modifications are not sufficiently understood for the corresponding genetic engineering programme. In this opinion paper, we discuss a strategy to solve this problem by developing a new paradigm for plant breeding. We propose combining the bioengineering of well-understood traits with subsequent evolutionary engineering, i.e. mutagenesis and artificial selection. An existing mathematical model of C3-C4 evolution is used to choose the most promising path towards this goal. Based on biomathematical simulations, we engineer Arabidopsis thaliana plants that express the central carbon-fixing enzyme Rubisco only in bundle sheath cells (Ru-BSC plants), the localization characteristic for C4 plants. This modification will initially be deleterious, forcing the Ru-BSC plants into a fitness valley from where previously inaccessible adaptive steps towards C4 photosynthesis become accessible through fitness-enhancing mutations. Mutagenized Ru-BSC plants are then screened for improved photosynthesis, and are expected to respond to imposed artificial selection pressures by evolving towards C4 anatomy and biochemistry. [ABSTRACT FROM AUTHOR]

Drought is one of the greatest limitations to crop expansion outside the present-day agricultural areas. It will become increasingly important in regions of the globe where, in the past, the problem was negligible, due to the recognized changes in global climate. Today the concern is with improving cultural practices and crop genotypes for drought-prone areas; therefore, understanding the mechanisms behind drought resistance and the efficient use of water by the plants is fundamental for the achievement of those goals. In this paper, the major constraints to carbon assimilation and the metabolic regulations that play a role in plant responses to water deficits, acting in isolation or in conjunction with other stresses, is reviewed. The effects on carbon assimilation include increased resistance to diffusion by stomata and the mesophyll, as well as biochemical and photochemical adjustments. Oxidative stress is critical for crops that experience drought episodes. The role of detoxifying systems in preventing irreversible damage to photosynthetic machinery and of redox molecules as local or systemic signals is revised. Plant capacity to avoid or repair membrane damage during dehydration and rehydration processes is pivotal for the maintenance of membrane integrity, especially for those that embed functional proteins. Among such proteins are water transporters, whose role in the regulation of plant water status and transport of other metabolites is the subject of intense investigation. Long-distance chemical signalling, as an early response to drought, started to be unravelled more than a decade ago. The effects of those signals on carbon assimilation and partitioning of assimilates between reproductive and non-reproductive structures are revised and discussed in the context of novel management techniques. These applications are designed to combine increased crop water-use efficiency with sustained yield and improved quality of the products. Through an understanding of the mechanisms leading to successful adaptation to dehydration and rehydration, it has already been possible to identify key genes able to alter metabolism and increase plant tolerance to drought. An overview of the most important data on this topic, including engineering for osmotic adjustment or protection, water transporters, and C4 traits is presented in this paper. Emphasis is given to the most successful or promising cases of genetic engineering in crops, using functional or regulatory genes. as well as to promising technologies, such as the transfer of transcription factors. [ABSTRACT FROM PUBLISHER]

This paper reviews the current status and future perspective of crassulacean acid metabolism (CAM) synthetic biology that integrates computational modelling and experimental technology for multigene pathway engineering, with a goal of transferring CAM into C3 plants to improve photosynthetic performance and water-use efficiency.To meet future food and energy security needs, which are amplified by increasing population growth and reduced natural resource availability, metabolic engineering efforts have moved from manipulating single genes/proteins to introducing multiple genes and novel pathways to improve photosynthetic efficiency in a more comprehensive manner. Biochemical carbon-concentrating mechanisms such as crassulacean acid metabolism (CAM), which improves photosynthetic, water-use, and possibly nutrient-use efficiency, represent a strategic target for synthetic biology to engineer more productive C3 crops for a warmer and drier world. One key challenge for introducing multigene traits like CAM onto a background of C3 photosynthesis is to gain a better understanding of the dynamic spatial and temporal regulatory events that underpin photosynthetic metabolism. With the aid of systems and computational biology, vast amounts of experimental data encompassing transcriptomics, proteomics, and metabolomics can be related in a network to create dynamic models. Such models can undergo simulations to discover key regulatory elements in metabolism and suggest strategic substitution or augmentation by synthetic components to improve photosynthetic performance and water-use efficiency in C3 crops. Another key challenge in the application of synthetic biology to photosynthesis research is to develop efficient systems for multigene assembly and stacking. Here, we review recent progress in computational modelling as applied to plant photosynthesis, with attention to the requirements for CAM, and recent advances in synthetic biology tool development. Lastly, we discuss possible options for multigene pathway construction in plants with an emphasis on CAM-into-C3 engineering. [ABSTRACT FROM PUBLISHER]

Contemporary plant breeding is under pressure to improve crop productivity at a rate surpassing past achievements. Different research groups dealing with this issue reached similar conclusions that the solution lies in improved biomass production by way of enhanced light capture and use efficiency, modified photosystem biochemistry, and improved partitioning of assimilates to the economic part of the plant. There seems to be a consensus of sorts. This ‘opinion paper’ calls attention to the phenomenon of heterosis, as expressed in maize, sorghum, and other crops where, depending on the case and the trait, larger biomass and greater yield have been achieved without a change in growth duration, photosystem biochemistry, or harvest index. This discussion maintains that there is no consensus about the genetics or the genomics of heterosis in regulating yield under diverse environments. Therefore, in a search for the basis of heterosis in yield and adaptation, the discussion bypasses the genetics and searches for answers in the phenomics of heterosis. The heterotic phenotype in itself provides challenging and important hints towards improving the yield of open-pollinated crops in general. These hints are linked to the homeostasis of photosynthesis with respect to temperature, the photobiology of the plant as mediated by phytochrome, the architectural foundations of the formation of a large sink, and the associated hormones and signals in controlling sink differentiation and source–sink communication. This discussion does not lay out plans and protocols but provides clues to explore within and beyond the current thinking about breeding for high yield. [ABSTRACT FROM AUTHOR]

Two highly contrasting variables summarizing the efficiency of transport of materials within the leaf are recognized as playing central roles in determining gas exchange and plant performance. This paper summarizes current approaches for the measurement of mesophyll conductance to CO2 (gm) and leaf hydraulic conductance (Kleaf) and addresses the physiological integration of these parameters. First, the most common methods to determine gm and Kleaf are summarized. Next, novel data compilation is analysed, which indicates that, across diverse species, gm is strongly linked with gas exchange parameters such as net CO2 assimilation (Aarea) and stomatal conductance (gs), and with Kleaf, independently of leaf vein length per leaf area. Based on their parallel responses to a number of environmental variables, this review proposes that gm is linked to the outside-xylem but not to the xylem component of Kleaf. Further, a mechanistic hypothesis is proposed to explain the interactions among all these and other physiological parameters. Finally, the possibility of estimating gm based on this hypothesis was tested using a regression analysis and a neurofuzzy logic approach. These approaches enabled the estimation of gm of given species from Kleaf and leaf mass per area, providing a higher predictive power than from either parameter alone. The possibility of estimating gm from measured Kleaf or vice-versa would result in a rapid increase in available data. Studies in which gm, Kleaf, and leaf mass per area are simultaneously determined are needed in order to confirm and strengthen predictive and explanatory models for these parameters and importantly improve resolution of the integrated hydraulic-stomatal-photosynthetic system. [ABSTRACT FROM PUBLISHER]

There is a need to develop rice plants with improved photosynthetic capacity and efficiency in order to enhance potential grain yield. Alterations in internal leaf morphology may be needed to underpin some of these improvements. One target is the production of a ‘Kranz-like’ anatomy, commonly considered to be required to achieve the desired levels of photosynthesis seen in C4 crops. Kranz anatomy typically has two or three mesophyll cells interspersing adjacent veins. As a first step to determining the potential for such anatomical modifications in rice leaves, a population of rice deletion mutants was analysed for alterations in vein patterning and mesophyll cells in the interveinal regions. Significant variation is demonstrated in vein arrangement and the sequential distribution of major and minor veins across the leaf width, although there is a significant correlation between the total number of veins present and the width of the leaf. Thus the potential is demonstrated for modifying rice leaf structure. Six distinct rice mutant lines, termed altered leaf morphology (alm) mutants, were analysed for the architecture of their interveinal mesophyll cell arrangement. It is shown that in these mutant lines, the distance between adjacent minor veins and adjacent minor and major veins is essentially determined by the size of the interveinal mesophyll cells rather than changes in mesophyll cell number across this region, and hence interveinal distance changes as a result of cell expansion rather than cell division. This observation will be important when developing screens for traits relevant for the introduction of Kranz anatomy into rice.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original work is properly cited.This paper is available online free of all access charges (see http://jxb.oxfordjournals.org/open_access.html for further details) [ABSTRACT FROM AUTHOR]

Photosynthesis is one of the key processes to be affected by water deficits, via decreased CO2 diffusion to the chloroplast and metabolic constraints. The relative impact of those limitations varies with the intensity of the stress, the occurrence (or not) of superimposed stresses, and the species we are dealing with. Total plant carbon uptake is further reduced due to the concomitant or even earlier inhibition of growth. Leaf carbohydrate status, altered directly by water deficits or indirectly (via decreased growth), acts as a metabolic signal although its role is not totally clear. Other relevant signals acting under water deficits comprise: abscisic acid (ABA), with an impact on stomatal aperture and the regulation at the transcription level of a large number of genes related to plant stress response; other hormones that act either concurrently (brassinosteroids, jasmonates, and salycilic acid) or antagonistically (auxin, cytokinin, or ethylene) with ABA; and redox control of the energy balance of photosynthetic cells deprived of CO2 by stomatal closure. In an attempt to systematize current knowledge on the complex network of interactions and regulation of photosynthesis in plants subjected to water deficits, a meta-analysis has been performed covering >450 papers published in the last 15 years. This analysis shows the interplay of sugars, reactive oxygen species (ROS), and hormones with photosynthetic responses to drought, involving many metabolic events. However, more significantly it highlights (i) how fragmented and often non-comparable the results are and (ii) how hard it is to relate molecular events to plant physiological status, namely photosynthetic activity, and to stress intensity. Indeed, the same data set usually does not integrate these different levels of analysis. Considering these limitations, it was hard to find a general trend, particularly concerning molecular responses to drought, with the exception of the genes ABI1 and ABI3. These genes, irrespective of the stress type (acute versus chronic) and intensity, show a similar response to water shortage in the two plant systems analysed (Arabidopsis and barley). Both are associated with ABA-mediated metabolic responses to stress and the regulation of stomatal aperture. Under drought, ABI1 transcription is up-regulated while ABI3 is usually down-regulated. Recently ABI3 has been hypothesized to be essential for successful drought recovery. [ABSTRACT FROM PUBLISHER]

Plants react to their environment and to management interventions by adjusting physiological functions and structure. Functional–structural plant models (FSPM), combine the representation of three-dimensional (3D) plant structure with selected physiological functions. An FSPM consists of an architectural part (plant structure) and a process part (plant functioning). The first deals with (i) the types of organs that are initiated and the way these are connected (topology), (ii) co-ordination in organ expansion dynamics, and (iii) geometrical variables (e.g. leaf angles, leaf curvature). The process part may include any physiological or physical process that affects plant growth and development (e.g. photosynthesis, carbon allocation). This paper addresses the following questions: (i) how are FSPM constructed, and (ii) for what purposes are they useful? Static, architectural models are distinguished from dynamic models. Static models are useful in order to study the significance of plant structure, such as light distribution in the canopy, gas exchange, remote sensing, pesticide spraying studies, and interactions between plants and biotic agents. Dynamic models serve quantitatively to integrate knowledge on plant functions and morphology as modulated by environment. Applications are in the domain of plant sciences, for example the study of plant plasticity as related to changes in the red:far red ratio of light in the canopy. With increasing availability of genetic information, FSPM will play a role in the assessment of the significance towards plant performance of variation in genetic traits across environments. In many crops, growers actively manipulate plant structure. FSPM is a promising tool to explore divergent management strategies. [ABSTRACT FROM PUBLISHER]

The likely future increase in atmospheric CO2 and associated changes in climate will affect global patterns of plant production. Models integrate understanding of the influence of the environment on plant physiological processes and so enable estimates of future changes to be made. Moreover, they allow us to assess the consequences of different assumptions for predictions and so stimulate further research. This paper is a review of the sensitivities of one such model, Hybrid6.5, a detailed mechanistic model of terrestrial primary production. This model is typical of its type, and the sensitivities of the global distribution of predicted production to model assumptions and possible future CO2 levels and climate are assessed. Sensitivity tests show that leaf phenology has large effects on mean C3 crop and needleleaved cold deciduous tree production, reducing potential net primary production (NPP) from that obtained using constant maximum annual leaf area index by 32.9% and 41.6%, respectively. Generalized Plant Type (GPT) specific parameterizations, particularly photosynthetic capacity per unit leaf N, affect mean predicted NPP of higher C3 plants by –22.3% to 27.9%, depending on the GPT, compared to NPP predictions obtained using mean parameter values. An increase in atmospheric CO2 concentrations from current values to 720 ppm by the end of this century, with associated effects on climate from a typical climate model, is predicted to increase global NPP by 37.3%. Mean increases range from 43.9–52.9% across different C3 GPTs, whereas the mean NPP of C4 grass and crop increases by 5.9%. Significant uncertainties concern the extent to which acclimative processes may reduce any potential future increase in primary production and the degree to which any gains are transferred to durable, and especially edible, biomass. Experimentalists and modellers need to work closely together to reduce these uncertainties. A number of research priorities are suggested.‘The green leaf or, to be more precise, the microscopic green grain of chlorophyll, is the focus, the point in the world to which solar energy flows on one side while all the manifestations of life on earth take their source on the other side.’Kliment Arkadievich Timiryazev The conclusions of a century of plant physiology, speech at Moscow University, 12 January 1901 [ABSTRACT FROM PUBLISHER]

The productivity of fruit trees is a linear function of the light intercepted, although the relationship is less tight when greater than 50% of available light is intercepted. This paper investigates the management of light energy in peach using the measurement of whole-tree light interception and gas exchange, along with the absorbed energy partitioning at the leaf level by concurrent measurements of gas exchange and chlorophyll fluorescence. These measurements were performed on trees of a custom-built ‘asymmetric’ orchard. Whole-tree gas exchange for north–south, vertical canopies (C) was similar to that for canopies intercepting the highest irradiance in the morning hours (W), but trees receiving the highest irradiance in the afternoon (E) had the highest net photosynthesis and transpiration while maintaining a water use efficiency (WUE) comparable to the other treatments. In the W trees, 29% and 8% more photosystems were damaged than in C and E trees, respectively. The quenching partitioning revealed that the non-photochemical quenching (NPQ) played the most important role in excess energy dissipation, but it was not fully active at low irradiance, possibly due to a sub-optimal trans-thylakoid ΔpH. The non-net carboxylative mechanisms (NC) appeared to be the main photoprotective mechanisms at low irradiance levels and, probably, they could facilitate the establishment of a trans-thylakoid ΔpH more appropriate for NPQ. These findings support the conclusion that irradiance impinging on leaves may be excessive and can cause photodamage, whose repair requires energy in the form of carbohydrates that are thereby diverted from tree growth and productivity. [ABSTRACT FROM PUBLISHER]

The scarcity of C4 plants in cool climates is usually attributed to their lower photosynthetic efficiency than C3 species at low temperatures. However, a lower freezing resistance may also decrease the competitive advantage of C4 plants by reducing canopy duration, especially in continental steppe grasslands, where a short, hot growing season is bracketed by frost events. This paper reports an experimental test of the hypothesis that cold acclimation is negligible in C4 grasses, leading to greater frost damage than in C3 species. The experiments exposed six C3 and three C4 Mongolian steppe grasses to 20 d chilling or control pre-treatments, followed by a high-light freezing event. Leaf resistance to freezing injury was independent of photosynthetic type. Three C3 species showed constitutive freezing resistance characterized by <20% leaf mortality, associated with high photosynthetic carbon fixation and electron transport rates and low leaf osmotic potential. One freezing-sensitive C4 species showed the expected pattern of chilling-induced damage to photosynthesis and >95% leaf mortality after the freezing event. However, three C3 and two C4 species displayed a cold acclimation response, showing significant decreases in osmotic potential and photosynthesis after exposure to chilling, and a 30–72% reduction of leaf freezing injury. This result suggested that down-regulation of osmotic potential may be involved in the cold acclimation process, and demonstrated that there is no inherent barrier to the development of cold acclimation in C4 species from this ecosystem. Cold acclimation via osmoregulation represents a previously undescribed mechanism to explain the persistence of C4 plants in cool climates. [ABSTRACT FROM PUBLISHER]

Signals produced in leaves are transported to the shoot apex where they cause flowering. Protein of the gene FLOWERING LOCUS T (FT) is probably a long day (LD) signal in Arabidopsis. In the companion paper, rapid LD increases in FT expression associated with flowering driven photosynthetically in red light were documented. In a far red (FR)-rich LD, along with FT there was a potential role for gibberellin (GA). Here, with the GA biosynthesis dwarf mutant ga1-3, GA4-treated plants flowered after 26 d in short days (SD) but untreated plants were still vegetative after 6 months. Not only was FT expression low in SD but applied GA bypassed some of the block to flowering in ft-1. On transfer to LD, ga1-3 only flowered when treated simultaneously with GA, and FT expression increased rapidly (<19.5 h) and dramatically (15-fold). In contrast, in the wild type in LD there was little requirement for GA for FT increase and flowering so its endogenous GA content was near to saturating. Despite this permissive role for endogenous GA in Columbia, RNA interference (RNAi) silencing of the GA biosynthesis gene, GA 20-OXIDASE2, revealed an additional, direct role for GA in LD. Flowering took twice as long after silencing the LD-regulated gene, GA 20-OXIDASE2. Such independent LD input by FT and GA reflects their non-sympatric expression (FT in the leaf blade and GA 20-OXIDASE2 in the petiole). Overall, FT acts as the main LD floral signal in Columbia and GA acts on flowering both via and independently of FT. [ABSTRACT FROM PUBLISHER]

This review examines the hypotheses that developmental programmed cell death in leaves is mediated (i) by sugar starvation in the leaf cells or (ii) by sugar accumulation in these cells. Experimental evidence for both hypotheses is critically discussed and found to be lacking. For example, some papers show that sugars prevent senescence of cut leaves placed in darkness, and prevent low sugar levels in the leaves. In these tests, the sugars seem to replace photosynthesis, hence the results have little relevance to leaf senescence in intact plants in the light. Low nitrogen nutrition and high light results in earlier senescence than the low nitrogen treatment alone. This is accompanied by high sugar levels in the leaves. The results have led to the idea that accumulation of sugars is the cause of the additional effect, or more generally, that sugar accumulation is always the direct cause of leaf senescence. Results from over-expressing, or knocking out, hexokinase genes tend to support the high sugar hypothesis, but pleiotropic effects confound this conclusion. In addition, several experiments show the effects of treatments on senescence without the increase in leaf sugar levels. Nonetheless, sugar levels are usually measured in whole leaves. Such an overall level does not reflect the differences in the onset of senescence between tissues and cells, and can therefore not be used as an argument for or against either of the two hypotheses. It is argued that future work should determine the time line of the concentrations of various sugars in various cells and cellular compartments, in relation to senescence processes in the same cells. Taken together, the data are not decisive. It is possible that neither of the two hypotheses is correct. [ABSTRACT FROM PUBLISHER]

Carbon dioxide enrichment changes the balance of photosynthetic limitations due to water, nitrogen, and light. This paper examines the role of stomata in these changes by comparing enrichment responses predicted by an optimality-based tree growth model, DESPOT, using three alternative ‘setpoints’ for stomatal acclimation: leaf water potential (ψl-setpoint), the ratio of intercellular to ambient CO2 mole fraction (ci/ca-setpoint), and the parameters in a simple model in which stomata are controlled by H2O and CO2 supply and demand (linked feedback). In each scenario, stomatal conductance (gs) and photosynthetic capacity (Vm) declined, productivity and leaf area index (LAI) increased, and ci/ca remained within 5% of its pre-enrichment value. Height growth preceded the LAI response in the ψl-setpoint and linked feedback scenarios, but not in the ci/ca-setpoint scenario. These trends were explained in terms of photosynthetic resource substitution using the equimarginal principle of production theory, which controls carbon allocation in DESPOT: enrichment initially increased the marginal product for light, driving substitution towards light; height growth also drove substitution towards N in the ψl and feedback scenarios, but the inflexibility of ci/ca prevented that substitution in the ci/ca scenario, explaining the lack of height response. Each scenario, however, predicted similar behaviour for ci/ca and carbon and water flux. These results suggest that ‘setpoints’ may be robust tools for linking and constraining carbon and water fluxes, but that they should be used more cautiously in predicting or interpreting how those fluxes arise from changes in tree structure and physiology. [ABSTRACT FROM PUBLISHER]

Rubisco is the predominant enzymatic mechanism in the biosphere by which autotrophic bacteria, algae, and terrestrial plants fix CO2 into organic biomass via the Calvin–Benson–Basham reductive pentose phosphate pathway. Rubisco is not a perfect catalyst, suffering from low turnover rates, a low affinity for its CO2 substrate, and a competitive inhibition by O2 as an alternative substrate. As a consequence of changing environmental conditions over the past 3.5 billion years, with decreasing CO2 and increasing O2 in the atmosphere, Rubisco has evolved into multiple enzymatic forms with a range of kinetic properties, as well as co-evolving with CO2-concentrating mechanisms to cope with the different environmental contexts in which it must operate. The most dramatic evidence of this is the occurrence of multiple forms of Rubisco within autotrophic proteobacteria, where Forms II, IC, IBc, IAc, and IAq can be found either singly or in multiple combinations within a particular bacterial genome. Over the past few years there has been increasing availability of genomic sequence data for bacteria and this has allowed us to gain more extensive insights into the functional significance of this diversification. This paper is focused on summarizing what is known about the diversity of Rubisco forms, their kinetic properties, development of bacterial CO2-concentrating mechanisms, and correlations with metabolic flexibility and inorganic carbon environments in which proteobacteria perform various types of obligate and facultative chemo- and photoautotrophic CO2 fixation. [ABSTRACT FROM PUBLISHER]

The internal conductance to CO2 supply from substomatal cavities to sites of carboxylation poses a large limitation to photosynthesis. It is known that internal conductance is decreased by soil water deficits, but it is not known if it is affected by atmospheric water deficits (i.e. leaf to air vapour pressure deficit, VPD). The aim of this paper was to examine the responses of internal conductance to atmospheric and soil water deficits in seedlings of the evergreen perennial Eucalyptus regnans F. Muell and the herbaceous plants Solanum lycopersicum (formerly Lycopersicon esculentum) Mill. and Phaseolus vulgaris L. Internal conductance was estimated with the variable J method from concurrent measurements of gas exchange and fluorescence. In all three species steady-state stomatal conductance decreased by ∼30% as VPD increased from 1 kPa to 2 kPa. In no species was internal conductance affected by VPD despite large effects on stomatal conductance. In contrast, soil water deficits decreased stomatal conductance and internal conductance of all three species. Decreases in stomatal and internal conductance under water deficit were proportional, but this proportionality differed among species, and thus the relationship between stomatal and internal conductance differed among species. These findings indicate that soil water deficits affect internal conductance while atmospheric water deficits do not. The reasons for this distinction are unknown but are consistent with soil and atmospheric water deficits having differing effects on leaf physiology and/or root–shoot communication. [ABSTRACT FROM PUBLISHER]

Inorganic nitrogen is an essential nutrient for photosynthetic organisms. Its efficient use in nature involves adaptation of the organisms to the availability of the nitrogen supply, to changing environmental conditions, and to the provision of carbon and other nutrients. The unicellular alga Chlamydomonas provides a useful model to identify not only each of the components participating in the assimilative process in a species, but also the regulatory networks modulating their activity. A remarkable fact is the ample array of transporters for inorganic nitrogen compounds operating in this single cell: 13 putative nitrate/nitrite transporters and eight putative ammonium transporters. However, for nitrate, only a few of them participate as the main suppliers of nitrogen for cell growth, and others probably function to adapt nitrogen utilization efficiency to conditions depending not only on the nitrogen source available but also on other nutrients and environmental conditions. This paper summarizes recent findings in Chlamydomonas to provide an integrated perspective. [ABSTRACT FROM PUBLISHER]

The subject of this paper, sun leaves are thicker and show higher photosynthetic rates than the shade leaves, is approached in two ways. The first seeks to answer the question: why are sun leaves thicker than shade leaves? To do this, CO2 diffusion within a leaf is examined first. Because affinity of Rubisco for CO2 is low, the carboxylation of ribulose 1,5-bisphosphate is competitively inhibited by O2, and the oxygenation of ribulose 1,5-bisphosphate leads to energy-consuming photorespiration, it is essential for C3 plants to maintain the CO2 concentration in the chloroplast as high as possible. Since the internal conductance for CO2 diffusion from the intercellular space to the chloroplast stroma is finite and relatively small, C3 leaves should have sufficient mesophyll surfaces occupied by chloroplasts to secure the area for CO2 dissolution and transport. This explains why sun leaves are thicker. The second approach is mechanistic or ‘how-oriented’. Mechanisms are discussed as to how sun leaves become thicker than shade leaves, in particular, the long-distance signal transduction from mature leaves to leaf primordia inducing the periclinal division of the palisade tissue cells. To increase the mesophyll surface area, the leaf can either be thicker or have smaller cells. Issues of cell size are discussed to understand plasticity in leaf thickness. [ABSTRACT FROM PUBLISHER]

Although the symptoms of magnesium deficiency are well documented in plants, the primary physiological effects of low Mg availability remain largely unknown. This paper describes the physiological responses of Mg starvation in Arabidopsis thaliana. Growth characteristics, Mg and sugar concentration, and photochemical performance were measured at regular intervals during the induction of Mg deficiency. These data show that Mg deficiency increased the sugar concentration and altered sucrose export from young source leaves before any noticeable effect on photosynthetic activity was seen. The decline in photosynthetic activity might be elicited by increased leaf sugar concentrations. Transcript levels of Cab2 (encoding a chlorophyll a/b protein) were lower in Mg-deficient plants before any obvious decrease in the chlorophyll concentration. These transcriptional data suggest that the reduction of chlorophyll is a response to sugar levels, rather than a lack of Mg atoms for chelating chlorophyll. [ABSTRACT FROM PUBLISHER]

The internal conductance to CO2 supply from substomatal cavities to sites of carboxylation may pose a large limitation to photosynthesis, but little is known of how it is affected by nutrient supply. Knowing how internal conductance responds to nutrient supply is critical for interpreting the biochemical responses from A−Ci curves. The aim of this paper was to examine the response of gi and photosynthetic parameters to nutrient supply in glasshouse-grown seedlings of the evergreen perennial Eucalyptus globulus Labill. Seedlings were grown with five different nutrient treatments and gi was estimated from concurrent measurements of gas exchange and fluorescence. Internal conductance varied between 0.12 and 0.19 mol m−2 s−1 and the relative limitation of photosynthesis due to internal conductance was greater than the stomatal limitation. In most species these two limitations are rather similar, but in E. globulus stomatal limitations were abnormally low due to high stomatal conductance (0.31 to 0.39 mol m−2 s−1). The large positive response of photosynthesis to nutrient supply was not matched by changes in internal conductance, and thus the relative limitation of photosynthesis due to internal conductance increased with increasing nutrient supply. Failure to account for finite internal conductance led to estimates of Vcmax that were 60% of the true value, which, in turn, led to an underestimation of in vivo Rubisco specific activity (as Vcmax/Rubisco content). The specific activity of Rubisco in E. globulus (21 mol mol−1 s−1) was close to the maximum published estimates, and thus, despite these leaves containing a large fraction of N as Rubisco (38–44%) there was no evidence that Rubisco activity was down-regulated or that the enzyme was in excess. [ABSTRACT FROM PUBLISHER]

In this paper some of the general concepts underpinning the computer modelling of metabolic systems are introduced. The difference between kinetic and structural modelling is emphasized, and the more important techniques from both, along with the physiological implications, are described. These approaches are then illustrated by descriptions of other work, in which they have been applied to models of the Calvin cycle, sucrose metabolism in sugar cane, and starch metabolism in potatoes. [ABSTRACT FROM PUBLISHER]

The development of chlorophyll (Chl) a fluorescence imaging systems has greatly increased the versatility of Chl a fluorometry as a non‐invasive technique for the investigation of photosynthesis in plants and algae. For example, systems that image at the microscopic level have made it possible to measure PSII photochemical efficiencies from chloroplasts within intact leaves and from individual algal cells within mixed populations, while systems that image over much larger areas have been used to investigate heterogeneous patterns of photosynthetic performance across leaves and in screening programmes that image tens or even hundreds of plants simultaneously. In addition, it is now practical to use fluorescence imaging systems as real‐time, multi‐channel fluorometers, which can be used to record continuous fluorescence traces from multiple leaves, plants, or algal cells. This paper discusses some of the theoretical and practical issues associated with the imaging of Chl a fluorescence and with Chl a fluorometry in general. This discussion includes a review of the most commonly used Chl a fluorescence parameters. [ABSTRACT FROM PUBLISHER]

Stomatal numbers are tightly controlled by environmental signals including light intensity and atmospheric CO2 partial pressure. This requires control of epidermal cell development during the early phase of leaf growth and involves changes in both the density of cells on the leaf surface and the proportion of cells that adopt a stomatal fate. This paper reviews the current understanding of how stomata develop and describes recent advances that have given insights into the regulatory mechanisms involved using mutant Arabidopsis plants that implicates a role for long-chain fatty acids in cell-to-cell communication. Evidence is presented which indicates that long-distance signalling from mature to newly developing leaves forms part of the mechanism by which stomatal development responds to environmental cues. Analysis of mutant plants suggests that the plant hormones abscisic acid, ethylene and jasmonates are implicated in the long-distance signalling pathway and that the action may be mediated by reactive oxygen species. [ABSTRACT FROM AUTHOR]

C4 bundle sheath leakiness is important in determining the balance between C4 and Calvin–Benson–Bassham cycles. Regulation and adaptation of leakiness allow for greater phenotypic plasticity than previously thought.Crop species with the C4 photosynthetic pathway are generally characterized by high productivity, especially in environmental conditions favouring photorespiration. In comparison with the ancestral C3 pathway, the biochemical and anatomical modifications of the C4 pathway allow spatial separation of primary carbon acquisition in mesophyll cells and subsequent assimilation in bundle-sheath cells. The CO2-concentrating C4 cycle has to operate in close coordination with CO2 reduction via the Calvin–Benson–Bassham (CBB) cycle in order to keep the C4 pathway energetically efficient. The gradient in CO2 concentration between bundle-sheath and mesophyll cells facilitates diffusive leakage of CO2. This rate of bundle-sheath CO2 leakage relative to the rate of phosphoenolpyruvate carboxylation (termed leakiness) has been used to probe the balance between C4 carbon acquisition and subsequent reduction as a result of environmental perturbations. When doing so, the correct choice of equations to derive leakiness from stable carbon isotope discrimination (Δ13C) during gas exchange is critical to avoid biased results. Leakiness responses to photon flux density, either short-term (during measurements) or long-term (during growth and development), can have important implications for C4 performance in understorey light conditions. However, recent reports show leakiness to be subject to considerable acclimation. Additionally, the recent discovery of two decarboxylating C4 cycles operating in parallel in Zea mays suggests that flexibility in the transported C4 acid and associated decarboxylase could also aid in maintaining C4/CBB balance in a changing environment. In this paper, we review improvements in methodology to estimate leakiness, synthesize reports on bundle-sheath leakiness, discuss different interpretations, and highlight areas where future research is necessary. [ABSTRACT FROM PUBLISHER]

Naive methods, rather than yield complexity, constrain the improvement of crop adaptation to drought; predicting how traits scale to crop level and a dual perspective on water and nitrogen are advocated.Crop yield in dry environments can be improved with complementary approaches including selecting for yield in the target environments, selecting for yield potential, and using indirect, trait- or genomic-based methods. This paper (i) outlines the achievements of direct selection for yield in improving drought adaptation, (ii) discusses the limitations of indirect approaches in the context of levels of organization, and (iii) emphasizes trade-offs and synergies between nitrogen nutrition and drought adaptation. Selection for yield in the water- and nitrogen-scarce environments of Australia improved wheat yield per unit transpiration at a rate of 0.12kg ha–1 mm–1 yr–1; for indirect methods to be justified, they must return superior rates of improvement, achieve the same rate at lower cost or provide other cost-effective benefits, such as expanding the genetic basis for selection. Slow improvement of crop adaptation to water stress using indirect methods is partially related to issues of scale. Traits are thus classified into three broad groups: those that generally scale up from low levels of organization to the crop level (e.g. herbicide resistance), those that do not (e.g. grain yield), and traits that might scale up provided they are considered in a integrated manner with scientifically sound scaling assumptions, appropriate growing conditions, and screening techniques (e.g. stay green). Predicting the scalability of traits may help to set priorities in the investment of research efforts. Primary productivity in arid and semi-arid environments is simultaneously limited by water and nitrogen, but few attempts are made to target adaptation to water and nitrogen stress simultaneously. Case studies in wheat and soybean highlight biological links between improved nitrogen nutrition and drought adaptation. [ABSTRACT FROM PUBLISHER]