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The influence of virus type (PRD1 and ΦX174), temperature (flow at 4 and 20°C), a no-flow storage duration (0, 36, 46, and 70 d), and temperature cycling (flow at 20°C and storage at 4°C) on virus transport and fate were investigated in saturated sand-packed columns. The vast majority (84-99.5%) of viruses were irreversibly retained on the sand, even in the presence of deionized water and beef extract at pH = 11. The reversibly retained virus fraction () was small (1.6 × 10 to 0.047) but poses a risk of long-term virus contamination. The value of and associated transport risk was lower at a higher temperature and for increases in the no-flow storage period due to the temperature dependency of the solid phase inactivation. A model that considered advective-dispersive transport, attachment (), detachment (), solid phase inactivation (μ), and liquid phase inactivation (μ) coefficients, and a Langmuirian blocking function provided a good description of the early portion of the breakthrough curve. The removal parameters were found to be in the order of > μ >> μ. Furthermore, μ was an order of magnitude higher than μ for PRD1, whereas μ was two and three orders of magnitude higher than μ for ΦX174 at 4 and 20°C, respectively. Transport modeling with two retention, release, and inactivation sites demonstrated that a small fraction of viruses exhibited a much slower release and solid phase inactivation rate, presumably because variations in the sand and virus surface roughness caused differences in the strength of adhesion. These findings demonstrate the importance of solid phase inactivation, temperature, and storage periods in eliminating virus transport in porous media. This research has potential implications for managed aquifer recharge applications and guidelines to enhance the virus removal by controlling the temperature and aquifer residence time.

Soil and aquifer materials have a finite capacity for colloid retention. Blocking of the limited number of available retention sites further decreases the rate of retention with time and enhances risks (e.g., pathogens or colloid-associated contaminants) or benefits (e.g., remediation by microorganisms or nanoparticles) of colloid migration. Our objective was to use a straightforward procedure, based on variable transformation and Laplace transform, to solve the problem of advective colloid transport with irreversible retention and Langmuirian blocking for a pulse-type condition. Formulas for the mean breakthrough time and retardation factor were obtained using zero- and first-order time moments of the breakthrough curves. Equations for the time and position (setback distance) for a particular colloid concentration were obtained from this information. D21 g breakthrough curves and retention profiles in fine sand at four ionic strengths were well described by the model when parameters were optimized. Illustrative simulations demonstrated that blocking becomes more important for smaller retention capacity () and for larger retention rate coefficient (), input concentration (), and pulse duration. Blocking tended to delay colloid arrival time at a particular location relative to a conservative tracer, and produced larger setback distances for smaller and /.

Microorganisms constitute an almost exclusive form of life in the earth's subsurface environment (not including caves), particularly at depths exceeding the soil horizon. While of broad interest to ecology and geology, scientific interest in the fate and transport of microorganisms, particularly those introduced through the anthropogenic environment, has focused on understanding the subsurface environment as a pathway for human pathogens and on optimizing the use of microbial organisms for remediation of potable groundwater. This special section, inspired by the 2014 Ninth International Symposium for Subsurface Microbiology, brings together recent efforts to better understand the spatiotemporal occurrence of anthropogenic microbial groundwater contamination and the fate and transport of microbes in the subsurface environment: in soils, deep unsaturated zones, and within aquifer systems. Work includes field reconnaissance, controlled laboratory studies to improve our understanding of specific fate and transport processes, and the development and application of improved mechanistic understanding of microbial fate and transport processes in the subsurface environment. The findings confirm and also challenge the limitations of our current understanding of highly complex microbial fate and transport processes across spatiotemporal scales in the subsurface environment; they also add to the increasing knowledge base to improve our ability to protect drinking water resources and perform in situ environmental remediation.

An understanding of microbial transport and survival in the subsurface is needed for public health, environmental applications, and industrial processes. Much research has therefore been directed to quantify mechanisms influencing microbial fate, and the results demonstrate a complex coupling among many physical, chemical, and biological factors. Mathematical models can be used to help understand and predict the complexities of microbial transport and survival in the subsurface under given assumptions and conditions. This review highlights existing model formulations that can be used for this purpose. In particular, we discuss models based on the advection-dispersion equation, with terms for kinetic retention to solid-water and/or air-water interfaces; blocking and ripening; release that is dependent on the resident time, diffusion, and transients in solution chemistry, water velocity, and water saturation; and microbial decay (first-order and Weibull) and growth (logistic and Monod) that is dependent on temperature, nutrient concentration, and/or microbial concentration. We highlight a tworegion model to account for microbe migration in the vicinity of a solid phase and use it to simulate the coupled transport and survival of Escherichia coli species under a variety of environmentally relevant scenarios. This review identifies challenges and limitations of models to describe and predict microbial transport and survival. In particular, many model parameters have to be optimized to simulate a diversity of observed transport, retention, and survival behavior at the laboratory scale. Improved theory and models are needed to predict the fate of microorganisms in natural subsurface systems that are highly dynamic and heterogeneous. © American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America.

Nutrient management plans (NMPs) for application of wastewater from concentrated animal feeding operations are designed to meet crop water and nutrient requirements, but implicitly assume that pathogenic microorganisms in the wastewater will be retained and die-off in the root zone. A NMP was implemented on a field plot to test this assumption by monitoring the fate of several fecal indicator microorganisms (Enterococcus, fecal coliforms, somatic coliphage, and total Escherichia coli). When well-water and wastewater were applied to meet measured evapotranspiration (ET), little advective transport of the indicator microorganisms occurred below the root zone and the remaining microorganisms rapidly died-off (within 1 mo). Additional experiments were conducted in the laboratory to better quantify microorganism transport and survival in the field soil. Batch survival experiments revealed much more rapid die-off rates for the bacterial indicator microorganisms in native than in sterilized soil, suggesting that biotic factors controlled survival. Saturated column experiments with packed field soil, demonstrated much greater transport potential for somatic coliphage than bacterial indicators (Enterococcus and total E. coli) and that the retention rates for the indicator microorganisms were not log-linear with depth. A worst case transport scenario of ponded infiltration on a large undistributed soil column from the field was also initiated and indicator microorganisms were not detected in the column outflow or in the soil at a depth of 65 cm. All of these observations support the hypothesis that a NMP at this site will protect groundwater supplies from microorganism contamination, especially when applied water and wastewater meet ET.

Sulfadimethoxine is a widely used sulfonamide veterinary antibiotic and could be a source of agricultural contamination. Therefore, information is needed about its degradation kinetics in manure under aerobic conditions. Based on the analysis of first-order kinetics and the assumption that sulfadimethoxine availability for degradation in manure could be limiting, a new kinetic model was developed and was found to fit the degradation kinetics well. The degradation rate in sterile manure was found to be much lower than in nonsterile manure, indicating that biodegradation was significant. In biologically active manure, the degradation rate constant decreased with increasing initial concentration of sulfadimethoxine, implying that the activity of the degrading microorganisms was inhibited. Increasing moisture or temperature was found to increase sulfadimethoxine degradation in manure. Mixing manure containing high levels of sulfadimethoxine with manure containing lower levels may result in more rapid degradation, thus greatly diminishing sulfadimethoxine contamination in manure and significantly reducing sulfadimethoxine inputs into the environment. During treatment, keeping the manure moist and storing in a moderately warm place under aerobic conditions may also help to diminish sulfadimethoxine contamination.

Mechanisms of coliphage transport and fate in the presence and absence of manure suspension were studied in saturated column experiments. In the presence of manure suspension, little inactivation of indigenous somatic coliphage occurred and the transport was controlled by deposition. The deposition followed a power law distribution with depth, and the magnitude increased with decreasing sand size. Comparison of the cumulative size distribution of manure components in the suspension initially and after passage through sand, suggested that particles retained by mechanical filtration and/or straining decreased the effective pore size and potentially induced straining of the somatic coliphage. A 2-site kinetic deposition model was used to estimate the magnitudes of attachment and straining in the presence of manure suspension, and provided a good description of the data. Modeling results indicated that straining accounted for 16 to 42% of the deposited somatic coliphage, and that both straining and attachment increased with decreasing sand size due to smaller pores and higher surface area, respectively. In the absence of manure suspension, phiX174 (a representative somatic coliphage) and MS2 (a male-specific RNA coliphage) transport was controlled by inactivation induced by the solid phase. This conclusion was based on comparison of coliphage transport behavior at 5 and 20 degrees C, mass balance information, and numerical modeling. Comparison of somatic coliphage transport data in the presence and absence of manure suspension revealed much higher effluent concentrations in the presence of manure. This difference was attributed to lower inactivation and higher detachment rates. The observed coliphage transport behavior suggests that survival of viruses may be extended in the presence of manure suspensions, and that transport studies conducted in the absence of manure suspension may not accurately characterize the transport potential of viruses in manure-contaminated environments.

Experiments were conducted to elucidate the transport behavior of cysts of Giardia and manure suspensions through several aquifer sands. Decreasing the median grain size of the sand resulted in lower peak effluent concentrations and increased deposition of the Giardia and manure particles in the sand near the column inlet. The effluent concentration curves for the manure suspensions also exhibited asymmetric shapes that tended to include larger particle sizes as the manure suspension was continuously added. Simulations of the transport of Giardia and manure particles using a simple and flexible power law model for the solid-water mass exchange term provided a satisfactory description of the effluent and spatial distribution data. The cumulative size distribution (CSD) of manure particles in the suspension initially and after passage through the packed columns was used to identify the mechanisms that were controlling the deposition of manure particles and Giardia. The CSD data indicated that manure particles were completely removed at early times by mechanical filtration and/or straining when the ratio of the particle to the median grain diameter was greater than 0.003 to 0.017. However, the CSD changed with increasing time due to deposition-induced filling of straining sites. The Giardia transport was controlled by straining. For a given sand, higher effluent concentrations of Giardia were observed in the presence than in the absence of manure suspension. The relative increase of Giardia in the effluent concentrations varied from 75 to 172%. Hence, pathogen transport studies conducted in the absence of manure suspension may underestimate transport potential in manure-contaminated environments.

Column experiments were conducted to study chemical factors that influence the release of clay (kaolinite and quartz minerals) from saturated Ottawa sand of different sizes (710, 360, and 240 μm). A relatively minor enhancement of clay release occurred when the pH was increased (5.8 to 10) or the ionic strength (IS) was decreased to deionized (DI) water. In contrast, clay release was dramatically enhanced when monovalent Na + was exchanged for multivalent cations (e.g., Ca 2+ and Mg 2+ ) on the clay and sand and then the solution IS was reduced to DI water. This solution chemistry sequence decreased the adhesive force acting on the clay as a result of an increase in the magnitude of the clay and sand zeta potential with cation exchange, and expansion of the double layer thickness with a decrease in IS to DI water. The amount of clay release was directly dependent on the Na' concentration of the exchanging solution and on the initial clay content of the sand (0.026—0.054% of the total mass). These results clearly demonstrated the importance of the order and magnitude of the solution chemistry sequence on clay release. Column results and scanning electron microscope (SEM) images also indicated that the clay was reversibly retained on the sand, despite predictions of irreversible interaction in the primary minimum. One plausible explanation is that adsorbed cations increased the separation distance between the clay―solid interfaces as a result of repulsive hydration forces. A cleaning procedure was subsequently developed to remove clay via cation exchange and IS reduction; SEM images demonstrated the effectiveness of this approach. The transport of Cu 2+ was then shown to be dramatically enhanced by an order of magnitude in peak concentration by adsorption on clays that were released following cation exchange and IS reduction.

The effect of cell preparation methods on the surface chemistry and retention of Escherichia coli D21 g was investigated over a range of ionic strength conditions. The cell preparation methods that were considered included filtration and centrifugation (at various speeds and for different durations). For a given ionic strength condition, it was found that cells prepared by filtration were more negatively charged and hydrophobic than cells prepared by centrifugation. Increasing the centrifugation speed (force imposed) or duration produced cells with a higher zeta potential (less negative) and a lower hydrophobicity. Column transport experiments for E. coli D21 g were also conducted with ultra pure quartz sand and the same solution chemistries. The first-order retention rate coefficient for E. coli D21 g increased with increasing speed and duration of centrifugation, and was lowest in the case of filtered cells. Moreover, the influence of cell preparation method was more pronounced in lower ionic strength solutions.

Concentrated animal feeding operations (CAFOs) generate large volumes of manure and manure-contaminated wash and runoff water. When applied to land at agronomic rates, CAFO wastewater has the potential to be a valuable fertilizer and soil amendment that can improve the physical condition of the soil for plant growth and reduce the demand for high quality water resources. However, excess amounts of nutrients, heavy metals, salts, pathogenic microorganisms, and pharmaceutically active compounds (antibiotics and hormones) in CAFO wastewater can adversely impact soil and water quality. The USEPA currently requires that application of CAFO wastes to agricultural lands follow an approved nutrient management plan (NMP). A NMP is a design document that sets rates for waste application to meet the water and nutrient requirements of the selected crops and soil types, and is typically written so as to be protective of surface water resources. The tacit assumption is that a well-designed and executed NMP ensures that all lagoon water contaminants are taken up or degraded in the root zone, so that ground water is inherently protected. The validity of this assumption for all lagoon water contaminants has not yet been thoroughly studied. This review paper discusses our current level of understanding on the environmental impact and sustainability of CAFO wastewater reuse. Specifically, we address the source, composition, application practices, environmental issues, transport pathways, and potential treatments that are associated with the reuse of CAFO wastewater on agricultural lands.

Profiles of retained colloids in porous media have frequently been observed to be hyper-exponential or non-monotonic with transport depth under unfavorable attachment conditions, whereas filtration theory predicts an exponential profile. In this work we present a stochastic model for colloid transport and deposition that allows various hypotheses for such deviations to be tested. The model is based on the conventional advective dispersion equation that accounts for first-order kinetic deposition and release of colloids. One or two stochastic parameters can be considered in this model, including the deposition coefficient, the release coefficient, and the average pore water velocity. In the case of one stochastic parameter, the probability density function (PDF) is characterized using log-normal, bimodal log-normal, or a simple two species/region formulation. When two stochastic parameters are considered, then a joint log-normal PDF is employed. Simulation results indicated that variations in the deposition coefficient and the average pore water velocity can both produce hyper-exponential deposition profiles. Bimodal formulations for the PDF were also able to produce hyper-exponential profiles, but with much lower variances in the deposition coefficient. The shape of the deposition profile was found to be very sensitive to the correlation of deposition and release coefficients, and to the correlation of pore water velocity and deposition coefficient. Application of the developed stochastic model to a particular set of colloid transport and deposition data indicated that chemical heterogeneity of the colloid population could not fully explain the observed behavior. Alternative interpretations were therefore proposed based on variability of the pore size and the water velocity distributions.

Various physical factors affecting the release rate of naturally occurring Cryptosporidium parvum oocysts and Giardia duodenalis cysts from dairy manure disks to sprinkled water were studied. The investigated factors included temperature (5 or 23 degrees C), manure type (calf manure, a 50% calf and 50% cow manure mixture, and a 10% calf and 90% cow manure mixture), and water application method (mist or drip) and flow rate. Effluent concentrations of manure and (oo)cysts were always several orders of magnitude below their initial concentration in the manure, decreased gradually, and exhibited persistent concentration tailing. Release of manure and (oo)cysts were found to be related by a constant factor, the so-called release efficiency of (oo)cysts. A previously developed (oo)cyst release model that included these release efficiencies provided a satisfactory simulation of the observed release. An effect of temperature on the release of manure and (oo)cysts was not apparent. The manure and (oo)cyst release rates from cow manure decreased faster than those from calf manure, and (oo)cyst release efficiencies from cow manure were higher than those from calf manure. In comparison with mist application, dripping water resulted in higher release rates of manure and (oo)cysts and in higher (oo)cyst release efficiencies due to the increased mechanical forces associated with droplet impact. Mist application at a higher flow rate resulted in faster release, but did not affect the (oo)cyst release efficiencies. The data and modeling approach described herein provide insight and an enhanced ability to describe the influence of physical factors on (oo)cyst release.