23 results on '"Porter, Mason A."'
Search Results
2. Mixed logit models and network formation
- Author
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Gupta, Harsh, primary and Porter, Mason A, additional
- Published
- 2022
- Full Text
- View/download PDF
3. Epidemic thresholds of infectious diseases on tie-decay networks
- Author
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Chen, Qinyi, primary and Porter, Mason A, additional
- Published
- 2021
- Full Text
- View/download PDF
4. An adaptive bounded-confidence model of opinion dynamics on networks.
- Author
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Kan, Unchitta, Feng, Michelle, and Porter, Mason A
- Subjects
SOCIAL networks ,LINEAR network coding ,COEVOLUTION ,COMPUTER simulation ,CONFIDENCE - Abstract
Individuals who interact with each other in social networks often exchange ideas and influence each other's opinions. A popular approach to study the spread of opinions on networks is by examining bounded-confidence models (BCMs), in which the nodes of a network have continuous-valued states that encode their opinions and are receptive to other nodes' opinions when they lie within some confidence bound of their own opinion. In this article, we extend the Deffuant–Weisbuch (DW) model, which is a well-known BCM, by examining the spread of opinions that coevolve with network structure. We propose an adaptive variant of the DW model in which the nodes of a network can (1) alter their opinions when they interact with neighbouring nodes and (2) break connections with neighbours based on an opinion tolerance threshold and then form new connections following the principle of homophily. This opinion tolerance threshold determines whether or not the opinions of adjacent nodes are sufficiently different to be viewed as 'discordant'. Using numerical simulations, we find that our adaptive DW model requires a larger confidence bound than a baseline DW model for the nodes of a network to achieve a consensus opinion. In one region of parameter space, we observe 'pseudo-consensus' steady states, in which there exist multiple subclusters of an opinion cluster with opinions that differ from each other by a small amount. In our simulations, we also examine the roles of early-time dynamics and nodes with initially moderate opinions for achieving consensus. Additionally, we explore the effects of coevolution on the convergence time of our BCM. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
5. Epidemic thresholds of infectious diseases on tie-decay networks.
- Author
-
Chen, Qinyi and Porter, Mason A
- Subjects
COMMUNICABLE diseases ,INFECTIOUS disease transmission ,TIME-varying networks ,SOCIAL networks ,EPIDEMICS - Abstract
In the study of infectious diseases on networks, researchers calculate epidemic thresholds to help forecast whether or not a disease will eventually infect a large fraction of a population. Because network structure typically changes with time, which fundamentally influences the dynamics of spreading processes and in turn affects epidemic thresholds for disease propagation, it is important to examine epidemic thresholds in models of disease spread on temporal networks. Most existing studies of epidemic thresholds in temporal networks have focused on models in discrete time, but most real-world networked systems evolve continuously with time. In our work, we encode the continuous time-dependence of networks in the evaluation of the epidemic threshold of a susceptible–infected–susceptible (SIS) process by studying an SIS model on tie-decay networks. We derive the epidemic-threshold condition of this model, and we perform numerical experiments to verify it. We also examine how different factors—the decay coefficients of the tie strengths in a network, the frequency of the interactions between the nodes in the network, and the sparsity of the underlying social network on which interactions occur—lead to decreases or increases of the critical values of the threshold and hence contribute to facilitating or impeding the spread of a disease. We thereby demonstrate how the features of tie-decay networks alter the outcome of disease spread. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
6. Random-graph models and characterization of granular networks
- Author
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Nauer, Silvia, primary, Böttcher, Lucas, additional, and Porter, Mason A, additional
- Published
- 2019
- Full Text
- View/download PDF
7. Effect of antipsychotics on community structure in functional brain networks
- Author
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Flanagan, Ryan, primary, Lacasa, Lucas, additional, Towlson, Emma K, additional, Lee, Sang Hoon, additional, and Porter, Mason A, additional
- Published
- 2019
- Full Text
- View/download PDF
8. Random-graph models and characterization of granular networks.
- Author
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Nauer, Silvia, Böttcher, Lucas, and Porter, Mason A
- Subjects
RANDOM graphs ,TWO-dimensional models - Abstract
Various approaches and measures from network analysis have been applied to granular and particulate networks to gain insights into their structural, transport, failure-propagation and other systems-level properties. In this article, we examine a variety of common network measures and study their ability to characterize various two-dimensional and three-dimensional spatial random-graph models and empirical two-dimensional granular networks. We identify network measures that are able to distinguish between physically plausible and unphysical spatial network models. Our results also suggest that there are significant differences in the distributions of certain network measures in two and three dimensions, hinting at important differences that we also expect to arise in experimental granular networks. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
9. Network analysis of particles and grains
- Author
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Papadopoulos, Lia, primary, Porter, Mason A, additional, Daniels, Karen E, additional, and Bassett, Danielle S, additional
- Published
- 2018
- Full Text
- View/download PDF
10. Mesoscale analyses of fungal networks as an approach for quantifying phenotypic traits
- Author
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Lee, Sang Hoon, primary, Fricker, Mark D., additional, and Porter, Mason A., additional
- Published
- 2016
- Full Text
- View/download PDF
11. Time-dependent community structure in legislation cosponsorship networks in the Congress of the Republic of Peru
- Author
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Lee, Sang Hoon, primary, Magallanes, José Manuel, additional, and Porter, Mason A., additional
- Published
- 2016
- Full Text
- View/download PDF
12. Null models for community detection in spatially embedded, temporal networks
- Author
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Sarzynska, Marta, primary, Leicht, Elizabeth A., additional, Chowell, Gerardo, additional, and Porter, Mason A., additional
- Published
- 2015
- Full Text
- View/download PDF
13. What are essential concepts about networks?
- Author
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Sayama, Hiroki, primary, Cramer, Catherine, additional, Porter, Mason A., additional, Sheetz, Lori, additional, and Uzzo, Stephen, additional
- Published
- 2015
- Full Text
- View/download PDF
14. Mesoscale analyses of fungal networks as an approach for quantifying phenotypic traits.
- Author
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SANG HOON LEE, FRICKER, MARK D., and PORTER, MASON A.
- Subjects
FUNGIVORES ,FUNGI ,BIOLOGICAL networks - Abstract
We investigate the application of mesoscopic response functions (MRFs) to characterize a large set of networks of fungi and slime moulds grown under a wide variety of different experimental treatments, including inter-species competition and attack by fungivores. We construct 'structural networks' by estimating cord conductances (which yield edge weights) from the experimental data, and we construct 'functional networks' by calculating edge weights based on how much nutrient traffic is predicted to occur along each edge. Both types of networks have the same topology, and we compute MRFs for both families of networks to illustrate two different ways of constructing taxonomies to group the networks into clusters of related fungi and slime moulds. Although both network taxonomies generate intuitively sensible groupings of networks across species, treatments and laboratories, we find that clustering using the functional-network measure appears to give groups with lower intra-group variation in species or treatments. We argue that MRFs provide a useful quantitative analysis of network behaviour that can (1) help summarize an expanding set of increasingly complex biological networks and (2) help extract information that captures subtle changes in intra- and inter-specific phenotypic traits that are integral to a mechanistic understanding of fungal behaviour and ecology. As an accompaniment to our paper, we also make a large data set of fungal networks available in the public domain. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
15. Time-dependent community structure in legislation cosponsorship networks in the Congress of the Republic of Peru.
- Author
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SANG HOON LEE, MAGALLANES, JOSÉ MANUEL, and PORTER, MASON A.
- Subjects
BIG data ,LEGISLATORS - Abstract
We study community structure in time-dependent legislation cosponsorship networks in the Peruvian Congress, and we compare them briefly to legislation cosponsorship networks in the US Senate. To study these legislatures, we employ a multilayer representation of temporal networks in which legislators in each layer are connected to each other with a weight that is based on how many bills they cosponsor. We then use multilayer modularity maximization to detect communities in these networks. From our computations, we are able to capture power shifts in the Peruvian Congress during 2006-2011. For example, we observe the emergence of 'opportunists', who switch from one community to another, as well as cohesive legislative communities whose initial component legislators never change communities. Interestingly, many of the opportunists belong to the group that won the majority in Congress. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
16. What are essential concepts about networks?
- Author
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HIROKI SAYAMA, CRAMER, CATHERINE, PORTER, MASON A., SHEETZ, LORI, and UZZO, STEPHEN
- Subjects
SOCIAL network analysis ,EVERYDAY life ,LITERACY ,EDUCATIONAL resources ,BRAINSTORMING - Abstract
Networks have become increasingly relevant to everyday life as human society has become increasingly connected. Attaining a basic understanding of networks has thus become a necessary form of literacy for people (and for youths in particular). At the NetSci 2014 conference, we initiated a year-long process to develop an educational resource that concisely summarizes essential concepts about networks that can be used by anyone of school age or older. The process involved several brainstorming sessions on one key question: 'What should every person living in the 21st century know about networks by the time he/she finishes secondary education?' Different sessions reached diverse participants, which included professional researchers in network science, educators and high-school students. The generated ideas were connected by the students to construct a concept network. We examined community structure in the concept network to group ideas into a set of important themes, which we refined through discussion into seven essential concepts. The students played a major role in this development process by providing insights and perspectives that were often unrecognized by researchers and educators. The final result, 'Network Literacy: Essential Concepts and Core Ideas', is now available as a booklet in several different languages from http://tinyurl.com/networkliteracy. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
17. Null models for community detection in spatially embedded, temporal networks.
- Author
-
SARZYNSKA, MARTA, LEICHT, ELIZABETH A., CHOWELL, GERARDO, and PORTER, MASON A.
- Subjects
NULL models (Ecology) ,EMBEDDED computer systems ,COMMUNITY organization ,MODULAR design ,RANDOM graphs ,DATA analysis - Abstract
In the study of networks, it is often insightful to use algorithms to determine mesoscale features such as 'community structure', in which densely connected sets of nodes constitute 'communities' that have sparse connections to other communities. The most popular way of detecting communities algorithmically is to maximize the quality function known as modularity. When maximizing modularity, one compares the actual connections in a (static or time-dependent) network to the connections obtained from a random-graph ensemble that acts as a null model. The communities are then the sets of nodes that are connected to each other densely relative to what is expected from the null model. Clearly, the process of community detection depends fundamentally on the choice of the null model, so it is important to develop and analyse novel null models that take into account appropriate features of the system under study. In this paper, we investigate the effects of using null models that incorporate spatial information, and we propose a novel null model based on the radiation model of population spread. We also develop novel synthetic spatial benchmark networks in which the connections between entities are based on the distance or flux between nodes, and we compare the performance of static and time-dependent versions of the radiation null model to the standard ('Newman-Girvan') null model for modularity optimization and to a recently proposed gravity null model. In our comparisons, we use both the above synthetic benchmarks and time-dependent correlation networks that we construct using countrywide dengue fever incidence data for Peru. Our findings illustrate the need to use appropriate generative models for the development of spatial null models for community detection. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
18. Time-dependent community structure in legislation cosponsorship networks in the Congress of the Republic of Peru
- Author
-
Lee, Sang Hoon, Magallanes, José Manuel, and Porter, Mason A.
- Abstract
We study community structure in time-dependent legislation cosponsorship networks in the Peruvian Congress, and we compare them briefly to legislation cosponsorship networks in the US Senate. To study these legislatures, we employ a multilayer representation of temporal networks in which legislators in each layer are connected to each other with a weight that is based on how many bills they cosponsor. We then use multilayer modularity maximization to detect communities in these networks. From our computations, we are able to capture power shifts in the Peruvian Congress during 2006–2011. For example, we observe the emergence of ‘opportunists’, who switch from one community to another, as well as cohesive legislative communities whose initial component legislators never change communities. Interestingly, many of the opportunists belong to the group that won the majority in Congress.
- Published
- 2017
- Full Text
- View/download PDF
19. Mesoscale analyses of fungal networks as an approach for quantifying phenotypic traits
- Author
-
Lee, Sang Hoon, Fricker, Mark D., and Porter, Mason A.
- Abstract
We investigate the application of mesoscopic response functions (MRFs) to characterize a large set of networks of fungi and slime moulds grown under a wide variety of different experimental treatments, including inter-species competition and attack by fungivores. We construct ‘structural networks’ by estimating cord conductances (which yield edge weights) from the experimental data, and we construct ‘functional networks’ by calculating edge weights based on how much nutrient traffic is predicted to occur along each edge. Both types of networks have the same topology, and we compute MRFs for both families of networks to illustrate two different ways of constructing taxonomies to group the networks into clusters of related fungi and slime moulds. Although both network taxonomies generate intuitively sensible groupings of networks across species, treatments and laboratories, we find that clustering using the functional-network measure appears to give groups with lower intra-group variation in species or treatments. We argue that MRFs provide a useful quantitative analysis of network behaviour that can (1) help summarize an expanding set of increasingly complex biological networks and (2) help extract information that captures subtle changes in intra- and inter-specific phenotypic traits that are integral to a mechanistic understanding of fungal behaviour and ecology. As an accompaniment to our paper, we also make a large data set of fungal networks available in the public domain.
- Published
- 2017
- Full Text
- View/download PDF
20. MuxViz: a tool for multilayer analysis and visualization of networks.
- Author
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DE DOMENICO, MANLIO, ARENAS, ALEX, and PORTER, MASON A.
- Subjects
DATA visualization ,COMPUTER software ,GRAPHICAL user interfaces - Abstract
Multilayer relationships among entities and information about entities must be accompanied by the means to analyse, visualize and obtain insights from such data.We present open-source software (muxViz) that contains a collection of algorithms for the analysis of multilayer networks, which are an important way to represent a large variety of complex systems throughout science and engineering. We demonstrate the ability of muxViz to analyse and interactively visualize multilayer data using empirical genetic, neuronal and transportation networks. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
21. Multilayer networks.
- Author
-
Kivelä, Mikko, Arenas, Alex, Barthelemy, Marc, Gleeson, James P., Moreno, Yamir, and Porter, Mason A.
- Subjects
COMMUNITY organization ,INFORMATION services ,SCIENTIFIC method ,MANAGEMENT ,WORK environment - Abstract
In most natural and engineered systems, a set of entities interact with each other in complicated patterns that can encompass multiple types of relationships, change in time and include other types of complications. Such systems include multiple subsystems and layers of connectivity, and it is important to take such ‘multilayer’ features into account to try to improve our understanding of complex systems. Consequently, it is necessary to generalize ‘traditional’ network theory by developing (and validating) a framework and associated tools to study multilayer systems in a comprehensive fashion. The origins of such efforts date back several decades and arose in multiple disciplines, and now the study of multilayer networks has become one of the most important directions in network science. In this paper, we discuss the history of multilayer networks (and related concepts) and review the exploding body of work on such networks. To unify the disparate terminology in the large body of recent work, we discuss a general framework for multilayer networks, construct a dictionary of terminology to relate the numerous existing concepts to each other and provide a thorough discussion that compares, contrasts and translates between related notions such as multilayer networks, multiplex networks, interdependent networks, networks of networks and many others. We also survey and discuss existing data sets that can be represented as multilayer networks. We review attempts to generalize single-layer-network diagnostics to multilayer networks. We also discuss the rapidly expanding research on multilayer-network models and notions like community structure, connected components, tensor decompositions and various types of dynamical processes on multilayer networks. We conclude with a summary and an outlook. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
22. What are essential concepts about networks?
- Author
-
Sayama, Hiroki, Cramer, Catherine, Porter, Mason A., Sheetz, Lori, and Uzzo, Stephen
- Abstract
Networks have become increasingly relevant to everyday life as human society has become increasingly connected. Attaining a basic understanding of networks has thus become a necessary form of literacy for people (and for youths in particular). At the NetSci 2014 conference, we initiated a year-long process to develop an educational resource that concisely summarizes essential concepts about networks that can be used by anyone of school age or older. The process involved several brainstorming sessions on one key question: ‘What should every person living in the 21st century know about networks by the time he/she finishes secondary education?’ Different sessions reached diverse participants, which included professional researchers in network science, educators and high-school students. The generated ideas were connected by the students to construct a concept network. We examined community structure in the concept network to group ideas into a set of important themes, which we refined through discussion into seven essential concepts. The students played a major role in this development process by providing insights and perspectives that were often unrecognized by researchers and educators. The final result, ‘Network Literacy: Essential Concepts and Core Ideas’, is now available as a booklet in several different languages from
http://tinyurl.com/networkliteracy .- Published
- 2016
- Full Text
- View/download PDF
23. Dynamic network centrality summarizes learning in the human brain
- Author
-
Mantzaris, Alexander V., Bassett, Danielle S., Wymbs, Nicholas F., Estrada, Ernesto, Porter, Mason A., Mucha, Peter J., Grafton, Scott T., and Higham, Desmond J.
- Abstract
We study functional activity in the human brain using functional magnetic resonance imaging and recently developed tools from network science. The data arise from the performance of a simple behavioural motor learning task. Unsupervised clustering of subjects with respect to similarity of network activity measured over 3 days of practice produces significant evidence of ‘learning’, in the sense that subjects typically move between clusters (of subjects whose dynamics are similar) as time progresses. However, the high dimensionality and time-dependent nature of the data makes it difficult to explain which brain regions are driving this distinction. Using network centrality measures that respect the arrow of time, we express the data in an extremely compact form that characterizes the aggregate activity of each brain region in each experiment using a single coefficient, while reproducing information about learning that was discovered using the full data set. This compact summary allows key brain regions contributing to centrality to be visualized and interpreted. We thereby provide a proof of principle for the use of recently proposed dynamic centrality measures on temporal network data in neuroscience.
- Published
- 2013
- Full Text
- View/download PDF
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